Wall clock time and date at job start Mon Mar 30 2020 01:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47388 * 2 1 4 4 C 1.50697 * 109.46971 * 239.99978 * 2 1 3 5 5 H 1.08001 * 119.99712 * 240.00193 * 4 2 1 6 6 C 1.37867 * 120.00300 * 59.99931 * 4 2 1 7 7 N 1.31521 * 120.00007 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00273 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46736 * 60.00201 * 8 6 4 10 10 H 1.48501 * 109.47386 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47100 * 300.00699 * 8 6 4 12 12 O 1.45206 * 109.46799 * 119.99850 * 2 1 3 13 13 C 1.34738 * 117.00120 * 269.99592 * 12 2 1 14 14 O 1.21496 * 120.00061 * 0.02562 * 13 12 2 15 15 C 1.47531 * 120.00127 * 180.02562 * 13 12 2 16 16 C 1.40215 * 119.85497 * 359.97438 * 15 13 12 17 17 C 1.36156 * 119.99181 * 179.97438 * 16 15 13 18 18 C 1.39659 * 120.51760 * 359.97438 * 17 16 15 19 19 S 1.76244 * 131.16794 * 180.02562 * 18 17 16 20 20 C 1.75806 * 90.40473 * 180.02562 * 19 18 17 21 21 N 1.27979 * 110.48780 * 359.73987 * 20 19 18 22 22 C 1.34751 * 118.11516 * 0.48488 * 21 20 19 23 23 C 1.38708 * 119.85451 * 179.97438 * 15 13 12 24 24 H 1.09005 * 109.47292 * 300.00102 * 1 2 3 25 25 H 1.08998 * 109.47440 * 59.99507 * 1 2 3 26 26 H 1.08999 * 109.47388 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99915 * 179.97438 * 7 6 4 28 28 H 1.08002 * 119.99911 * 359.96137 * 16 15 13 29 29 H 1.08002 * 119.73996 * 180.02562 * 17 16 15 30 30 H 1.07999 * 124.75250 * 179.97438 * 20 19 18 31 31 H 1.08000 * 119.92156 * 0.02562 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6531 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5199 -4.0080 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1192 -4.0076 12 8 2.0139 -0.6845 1.1856 13 6 2.2179 0.0669 2.2853 14 8 1.9970 1.2612 2.2546 15 6 2.7094 -0.5607 3.5267 16 6 2.9629 -1.9394 3.5590 17 6 3.4171 -2.5213 4.7030 18 6 3.6347 -1.7552 5.8503 19 16 4.2080 -2.2060 7.4548 20 6 4.0752 -0.5352 7.9853 21 7 3.6559 0.2061 7.0300 22 6 3.3887 -0.3763 5.8446 23 6 2.9188 0.2158 4.6569 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7095 1.1617 -3.4844 28 1 2.7976 -2.5396 2.6764 29 1 3.6114 -3.5835 4.7232 30 1 4.3174 -0.1830 8.9771 31 1 2.7213 1.2771 4.6255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122704595.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:58 Heat of formation + Delta-G solvation = -50.109678 kcal Electronic energy + Delta-G solvation = -18105.500842 eV Core-core repulsion = 15056.796264 eV Total energy + Delta-G solvation = -3048.704578 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.80289 -40.88760 -38.05915 -37.45690 -35.34240 -32.57559 -31.81964 -31.01468 -27.47375 -26.39047 -25.53022 -23.42532 -22.91556 -21.30915 -19.77985 -18.84431 -18.49727 -17.69842 -17.16548 -17.01169 -16.83517 -16.36463 -15.78753 -15.20449 -15.08010 -14.80542 -14.41420 -14.22520 -13.88229 -13.29339 -13.15093 -13.02838 -12.93391 -12.81061 -12.40041 -12.20705 -12.17533 -11.64990 -11.56874 -11.30199 -11.02696 -10.75579 -10.60211 -9.92160 -9.25071 -8.28755 -6.46143 -0.78022 -0.52032 0.16655 0.57053 1.09705 1.42752 1.47221 1.54152 1.55572 1.78655 2.39645 2.53668 2.97280 3.02576 3.40453 3.66683 3.91301 3.99342 4.11847 4.43335 4.50145 4.57196 4.76841 4.79622 4.90685 4.94053 5.09635 5.13707 5.39003 5.46653 5.59371 5.86160 6.01702 6.44840 6.57200 6.83777 7.25053 8.79075 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.040216 B = 0.003635 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.081378 B = 7701.955516 C = 8138.949101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.217 3.783 3 H 0.008 0.992 4 C -0.548 4.548 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.268 1.268 12 O -0.348 6.348 13 C 0.495 3.505 14 O -0.549 6.549 15 C -0.116 4.116 16 C -0.051 4.051 17 C -0.071 4.071 18 C -0.159 4.159 19 S 0.107 5.893 20 C 0.116 3.884 21 N -0.495 5.495 22 C 0.049 3.951 23 C -0.011 4.011 24 H 0.021 0.979 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.271 0.729 28 H 0.160 0.840 29 H 0.176 0.824 30 H 0.256 0.744 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.845 -9.628 20.470 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.193 1.193 12 O -0.264 6.264 13 C 0.341 3.659 14 O -0.442 6.442 15 C -0.120 4.120 16 C -0.073 4.073 17 C -0.093 4.093 18 C -0.279 4.279 19 S 0.361 5.639 20 C -0.189 4.189 21 N -0.207 5.207 22 C -0.070 4.070 23 C -0.031 4.031 24 H 0.041 0.959 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.178 0.822 29 H 0.194 0.806 30 H 0.272 0.728 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.939 -9.485 20.929 24.003 hybrid contribution -0.400 0.971 -1.752 2.043 sum 6.538 -8.515 19.177 21.977 Atomic orbital electron populations 1.22004 0.96611 1.00658 1.00838 1.20439 0.92144 0.92204 0.78814 0.97427 1.21266 1.33581 1.14092 0.89643 0.90935 1.25858 0.94662 0.95650 1.02215 1.70021 1.36579 1.23671 1.25344 0.85200 0.78767 0.78679 0.76567 1.18568 1.20400 1.19310 1.86513 1.76072 1.42872 1.20953 1.21579 0.74179 0.84967 0.85160 1.90762 1.50384 1.17753 1.85265 1.18907 1.06827 0.95695 0.90553 1.21320 0.94115 0.92206 0.99618 1.20375 0.98689 1.01388 0.88822 1.24334 1.05340 0.97014 1.01183 1.84910 1.65777 1.12911 1.00295 1.29884 0.95888 0.90624 1.02523 1.66176 1.16037 1.38645 0.99795 1.19019 1.05128 0.90070 0.92766 1.20707 0.93347 1.00298 0.88773 0.95944 0.89914 0.93158 0.91959 0.82196 0.80644 0.72841 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.48 9.33 71.98 0.67 -6.81 16 2 C 0.22 12.08 2.56 29.85 0.08 12.15 16 3 H 0.01 0.49 7.16 -2.39 -0.02 0.48 16 4 C -0.55 -30.98 8.90 25.60 0.23 -30.76 16 5 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -52.96 11.32 21.44 0.24 -52.72 16 8 Si 0.99 42.52 29.54 68.60 2.03 44.54 16 9 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 12 O -0.35 -16.93 9.09 -56.48 -0.51 -17.45 16 13 C 0.49 22.28 7.86 70.27 0.55 22.83 16 14 O -0.55 -28.13 15.56 19.85 0.31 -27.82 16 15 C -0.12 -4.02 5.85 -20.23 -0.12 -4.13 16 16 C -0.05 -1.37 9.55 22.27 0.21 -1.16 16 17 C -0.07 -1.46 9.99 22.13 0.22 -1.24 16 18 C -0.16 -3.51 6.55 23.06 0.15 -3.36 16 19 S 0.11 1.46 23.39 -56.49 -1.32 0.14 16 20 C 0.12 1.61 12.40 130.80 1.62 3.24 16 21 N -0.50 -11.81 10.56 -190.65 -2.01 -13.82 16 22 C 0.05 1.34 6.94 39.76 0.28 1.61 16 23 C -0.01 -0.34 9.65 23.00 0.22 -0.12 16 24 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.08 4.61 6.07 -2.39 -0.01 4.60 16 26 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.16 4.12 7.59 -2.91 -0.02 4.10 16 29 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 30 H 0.26 0.84 8.06 -2.91 -0.02 0.82 16 31 H 0.13 4.66 7.60 -2.91 -0.02 4.64 16 Total: -1.00 -71.38 292.59 4.46 -66.92 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.17 Total: 6.64 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 4.56 Total: -6.44 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -1.77 Total: -66.54 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.20 Total: -45.27 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.32 Total: 0.14 kcal Total: -71.38 4.46 -66.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122704595.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.811 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds