Wall clock time and date at job start Mon Mar 30 2020 01:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32389 * 120.44164 * 2 1 4 4 C 1.31780 * 120.85534 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.11230 * 180.02562 * 4 3 2 6 6 F 1.39903 * 109.47223 * 229.99889 * 5 4 3 7 7 F 1.39908 * 109.47533 * 350.00146 * 5 4 3 8 8 N 1.46498 * 109.47275 * 109.99973 * 5 4 3 9 9 C 1.36936 * 120.00303 * 179.97438 * 8 5 4 10 10 H 1.07999 * 119.99905 * 0.02562 * 9 8 5 11 11 C 1.38816 * 119.99777 * 180.02562 * 9 8 5 12 12 N 1.31610 * 120.00398 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99611 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46856 * 60.00581 * 13 11 9 15 15 H 1.48500 * 109.47167 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47392 * 300.00482 * 13 11 9 17 17 N 1.31801 * 121.76848 * 0.02562 * 4 3 2 18 18 C 1.32440 * 120.79324 * 359.97438 * 17 4 3 19 19 Cl 1.73597 * 120.46234 * 179.97438 * 18 17 4 20 20 C 1.38475 * 120.43476 * 179.97438 * 2 1 3 21 21 C 1.50704 * 120.80977 * 359.75295 * 20 2 1 22 22 H 1.08993 * 109.47169 * 270.02508 * 1 2 3 23 23 H 1.09006 * 109.46875 * 30.02572 * 1 2 3 24 24 H 1.08999 * 109.47292 * 150.01873 * 1 2 3 25 25 H 0.96996 * 119.99701 * 0.02562 * 8 5 4 26 26 H 0.97006 * 120.00213 * 179.97438 * 12 11 9 27 27 H 1.08998 * 109.47561 * 89.99391 * 21 20 2 28 28 H 1.08998 * 109.47483 * 210.00220 * 21 20 2 29 29 H 1.09006 * 109.46439 * 329.99904 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1778 1.1414 0.0000 4 6 3.4955 1.1509 0.0005 5 6 4.2191 2.4727 0.0011 6 9 5.1872 2.4749 -1.0090 7 9 3.3038 3.5057 -0.2281 8 7 4.8675 2.6740 1.2993 9 6 5.5894 3.8135 1.5348 10 1 5.6805 4.5641 0.7636 11 6 6.2042 4.0038 2.7647 12 7 6.0937 3.0889 3.7043 13 14 7.1896 5.5580 3.0857 14 1 6.3068 6.7430 2.9387 15 1 7.7398 5.5194 4.4645 16 1 8.3049 5.6475 2.1094 17 7 4.1975 0.0354 0.0005 18 6 3.5957 -1.1444 0.0005 19 17 4.5288 -2.6083 -0.0001 20 6 2.2084 -1.1939 0.0005 21 6 1.4835 -2.5151 0.0067 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8901 -0.5135 25 1 4.7861 1.9997 1.9917 26 1 6.5236 3.2218 4.5637 27 1 1.3047 -2.8364 -1.0194 28 1 2.0907 -3.2605 0.5203 29 1 0.5303 -2.4040 0.5239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534016.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:24 Heat of formation + Delta-G solvation = -40.165766 kcal Electronic energy + Delta-G solvation = -19367.382467 eV Core-core repulsion = 15795.128603 eV Total energy + Delta-G solvation = -3572.253863 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.049 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.91215 -46.03191 -41.30936 -37.03834 -35.31258 -34.17753 -33.64953 -30.96989 -29.42987 -28.12680 -25.22653 -23.41637 -23.19835 -21.25796 -18.54632 -18.12049 -16.91887 -16.43580 -16.15752 -15.50428 -15.27506 -14.72076 -14.18746 -13.79674 -13.46759 -13.35790 -13.08142 -12.88006 -12.83216 -12.46248 -12.38804 -12.28524 -12.13312 -11.89960 -11.45343 -11.09570 -10.93637 -10.60571 -10.33475 -10.22761 -9.91146 -9.50753 -9.41788 -9.32112 -7.61548 -5.97042 -3.39144 0.50025 0.82017 1.46768 3.25083 3.37771 3.41171 3.43411 3.47760 3.84585 4.29211 4.42399 4.47482 4.64048 4.82892 5.06471 5.24653 5.27573 5.33077 5.38314 5.50157 5.52967 5.63983 5.66481 6.07616 6.20594 6.70278 7.54674 7.84732 8.08462 9.26193 9.55620 9.97584 11.23603 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.005629 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.765656 B = 4972.872891 C = 5481.932248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.184 3.816 3 N -0.478 5.478 4 C 0.304 3.696 5 C 0.587 3.413 6 F -0.197 7.197 7 F -0.190 7.190 8 N -0.708 5.708 9 C -0.268 4.268 10 H 0.083 0.917 11 C 0.007 3.993 12 N -0.924 5.924 13 Si 0.922 3.078 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.280 1.280 17 N -0.474 5.474 18 C 0.220 3.780 19 Cl -0.008 7.008 20 C -0.171 4.171 21 C -0.109 4.109 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.403 0.597 26 H 0.262 0.738 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 -12.682 -7.438 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.037 3.963 3 N -0.193 5.193 4 C 0.033 3.967 5 C 0.457 3.543 6 F -0.179 7.179 7 F -0.172 7.172 8 N -0.358 5.358 9 C -0.397 4.397 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.751 3.249 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.206 1.206 17 N -0.189 5.189 18 C 0.046 3.954 19 Cl 0.021 6.979 20 C -0.176 4.176 21 C -0.167 4.167 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.240 0.760 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.830 -11.745 -7.436 17.623 hybrid contribution 0.422 -0.294 0.404 0.654 sum -10.409 -12.039 -7.032 17.400 Atomic orbital electron populations 1.20837 0.86656 1.04497 1.04249 1.21732 0.97993 0.86360 0.90234 1.68042 1.08643 1.30206 1.12365 1.23238 0.86768 0.93363 0.93334 1.16855 0.77392 0.78267 0.81809 1.93089 1.65058 1.96437 1.63276 1.93085 1.67682 1.61329 1.95058 1.43226 1.59081 1.24536 1.08930 1.19178 1.25316 0.96249 0.98976 0.89935 1.24852 0.99849 0.98734 0.95620 1.69675 1.47364 1.34554 1.05292 0.86058 0.79798 0.81917 0.77133 1.20590 1.21347 1.20556 1.67476 1.41652 0.97205 1.12589 1.21915 0.88473 0.89247 0.95743 1.98415 1.74003 1.29551 1.95938 1.21313 0.92956 0.99036 1.04312 1.20800 1.00535 0.91911 1.03449 0.89033 0.89226 0.89636 0.75991 0.92793 0.89929 0.90222 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.45 36.01 0.34 -0.58 15 2 C 0.18 2.56 6.82 -82.27 -0.56 2.00 15 3 N -0.48 -8.89 9.74 -7.01 -0.07 -8.96 15 4 C 0.30 6.44 6.73 -157.20 -1.06 5.38 15 5 C 0.59 14.29 2.52 -5.20 -0.01 14.27 15 6 F -0.20 -4.85 17.01 2.25 0.04 -4.81 15 7 F -0.19 -4.60 16.60 2.25 0.04 -4.56 15 8 N -0.71 -19.47 5.48 -59.64 -0.33 -19.80 15 9 C -0.27 -7.81 9.68 -15.06 -0.15 -7.96 15 10 H 0.08 2.36 7.83 -52.49 -0.41 1.95 15 11 C 0.01 0.21 5.50 -17.43 -0.10 0.11 15 12 N -0.92 -27.86 13.06 55.49 0.72 -27.14 15 13 Si 0.92 22.51 29.55 -169.99 -5.02 17.49 15 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 17 N -0.47 -9.56 10.27 -7.85 -0.08 -9.64 15 18 C 0.22 3.51 7.33 -17.07 -0.13 3.39 15 19 Cl -0.01 -0.10 27.65 -51.86 -1.43 -1.54 15 20 C -0.17 -2.19 5.92 -104.32 -0.62 -2.81 15 21 C -0.11 -0.86 8.91 36.01 0.32 -0.54 15 22 H 0.09 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.09 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.08 0.49 6.82 -51.93 -0.35 0.13 15 25 H 0.40 11.46 7.66 -40.82 -0.31 11.15 15 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 15 28 H 0.08 0.61 7.03 -51.93 -0.37 0.25 15 29 H 0.08 0.47 6.83 -51.93 -0.35 0.12 15 LS Contribution 282.46 15.07 4.26 4.26 Total: -1.00 -33.00 282.46 -6.03 -39.03 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -2.20 Total: 2.39 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: -1.95 Total: 13.26 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: 0.25 Total: -65.53 kcal Atomic # 9 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.43 Total: -1.54 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.00 -6.03 -39.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534016.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.136 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds