Wall clock time and date at job start Mon Mar 30 2020 01:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32389 * 120.44164 * 2 1 4 4 C 1.31780 * 120.85534 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.11230 * 180.02562 * 4 3 2 6 6 F 1.39903 * 109.47223 * 229.99889 * 5 4 3 7 7 F 1.39908 * 109.47533 * 350.00146 * 5 4 3 8 8 N 1.46498 * 109.47275 * 109.99973 * 5 4 3 9 9 C 1.36936 * 120.00303 * 179.97438 * 8 5 4 10 10 H 1.07999 * 119.99905 * 0.02562 * 9 8 5 11 11 C 1.38816 * 119.99777 * 180.02562 * 9 8 5 12 12 N 1.31610 * 120.00398 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99611 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46856 * 60.00581 * 13 11 9 15 15 H 1.48500 * 109.47167 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47392 * 300.00482 * 13 11 9 17 17 N 1.31801 * 121.76848 * 0.02562 * 4 3 2 18 18 C 1.32440 * 120.79324 * 359.97438 * 17 4 3 19 19 Cl 1.73597 * 120.46234 * 179.97438 * 18 17 4 20 20 C 1.38475 * 120.43476 * 179.97438 * 2 1 3 21 21 C 1.50704 * 120.80977 * 359.75295 * 20 2 1 22 22 H 1.08993 * 109.47169 * 270.02508 * 1 2 3 23 23 H 1.09006 * 109.46875 * 30.02572 * 1 2 3 24 24 H 1.08999 * 109.47292 * 150.01873 * 1 2 3 25 25 H 0.96996 * 119.99701 * 0.02562 * 8 5 4 26 26 H 0.97006 * 120.00213 * 179.97438 * 12 11 9 27 27 H 1.08998 * 109.47561 * 89.99391 * 21 20 2 28 28 H 1.08998 * 109.47483 * 210.00220 * 21 20 2 29 29 H 1.09006 * 109.46439 * 329.99904 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1778 1.1414 0.0000 4 6 3.4955 1.1509 0.0005 5 6 4.2191 2.4727 0.0011 6 9 5.1872 2.4749 -1.0090 7 9 3.3038 3.5057 -0.2281 8 7 4.8675 2.6740 1.2993 9 6 5.5894 3.8135 1.5348 10 1 5.6805 4.5641 0.7636 11 6 6.2042 4.0038 2.7647 12 7 6.0937 3.0889 3.7043 13 14 7.1896 5.5580 3.0857 14 1 6.3068 6.7430 2.9387 15 1 7.7398 5.5194 4.4645 16 1 8.3049 5.6475 2.1094 17 7 4.1975 0.0354 0.0005 18 6 3.5957 -1.1444 0.0005 19 17 4.5288 -2.6083 -0.0001 20 6 2.2084 -1.1939 0.0005 21 6 1.4835 -2.5151 0.0067 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8901 -0.5135 25 1 4.7861 1.9997 1.9917 26 1 6.5236 3.2218 4.5637 27 1 1.3047 -2.8364 -1.0194 28 1 2.0907 -3.2605 0.5203 29 1 0.5303 -2.4040 0.5239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534016.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:24 Heat of formation + Delta-G solvation = -63.635197 kcal Electronic energy + Delta-G solvation = -19368.400177 eV Core-core repulsion = 15795.128603 eV Total energy + Delta-G solvation = -3573.271574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.83367 -47.96152 -42.55492 -38.16208 -36.76569 -35.92332 -34.89046 -33.02627 -30.34927 -29.46885 -26.86459 -24.97589 -24.50777 -22.80385 -20.16399 -19.71575 -18.78052 -18.24501 -17.98320 -16.74632 -16.70274 -16.22356 -15.74762 -15.29075 -14.85892 -14.67660 -14.34189 -14.31230 -14.26192 -14.03017 -13.69001 -13.60282 -13.21947 -13.15500 -12.97527 -12.92104 -12.37130 -12.34029 -12.08689 -11.81169 -11.59601 -11.55391 -10.70849 -10.38852 -9.80484 -8.17912 -5.65139 -0.75360 -0.36175 0.30658 1.43166 1.49219 1.54682 1.73239 2.08912 2.44118 2.66816 2.96289 3.17635 3.19711 3.45269 3.60993 3.75907 3.80396 4.32102 4.61909 4.67718 4.72192 4.73655 4.84316 5.07131 5.26463 5.32874 5.50795 5.88841 6.53909 7.02294 7.39318 7.77835 9.03181 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.005629 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.765656 B = 4972.872891 C = 5481.932248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.175 3.825 3 N -0.499 5.499 4 C 0.276 3.724 5 C 0.582 3.418 6 F -0.205 7.205 7 F -0.194 7.194 8 N -0.721 5.721 9 C -0.290 4.290 10 H 0.080 0.920 11 C -0.044 4.044 12 N -0.956 5.956 13 Si 0.992 3.008 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.272 1.272 17 N -0.508 5.508 18 C 0.193 3.807 19 Cl 0.012 6.988 20 C -0.140 4.140 21 C -0.111 4.111 22 H 0.109 0.891 23 H 0.086 0.914 24 H 0.127 0.873 25 H 0.393 0.607 26 H 0.263 0.737 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.288 -14.124 -7.670 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.029 3.971 3 N -0.214 5.214 4 C 0.006 3.994 5 C 0.453 3.547 6 F -0.187 7.187 7 F -0.176 7.176 8 N -0.370 5.370 9 C -0.419 4.419 10 H 0.098 0.902 11 C -0.239 4.239 12 N -0.602 5.602 13 Si 0.817 3.183 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.198 1.198 17 N -0.225 5.225 18 C 0.021 3.979 19 Cl 0.040 6.960 20 C -0.146 4.146 21 C -0.168 4.168 22 H 0.127 0.873 23 H 0.105 0.895 24 H 0.145 0.855 25 H 0.229 0.771 26 H 0.072 0.928 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.632 -13.214 -7.701 19.837 hybrid contribution 0.873 -0.022 0.419 0.969 sum -11.759 -13.236 -7.283 19.144 Atomic orbital electron populations 1.21095 0.82530 1.06465 1.05826 1.22707 1.00270 0.85358 0.88779 1.67991 1.07529 1.32834 1.13059 1.22336 0.87711 0.92106 0.97294 1.17034 0.77240 0.80145 0.80294 1.93039 1.65647 1.96649 1.63346 1.93042 1.67609 1.61995 1.94956 1.43271 1.59838 1.23908 1.09951 1.19467 1.26218 0.96827 0.99384 0.90231 1.25798 1.00782 1.02127 0.95160 1.69816 1.48272 1.36481 1.05621 0.84993 0.78303 0.77936 0.77100 1.19560 1.20772 1.19784 1.67277 1.43063 0.98367 1.13803 1.22381 0.90187 0.88673 0.96670 1.98412 1.73947 1.27731 1.95880 1.21925 0.91723 1.01117 0.99791 1.21078 1.01349 0.88716 1.05651 0.87310 0.89470 0.85486 0.77072 0.92791 0.87121 0.89744 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 9.45 71.24 0.67 -0.72 15 2 C 0.18 4.52 6.82 42.53 0.29 4.81 15 3 N -0.50 -18.59 9.74 -176.09 -1.71 -20.30 15 4 C 0.28 12.08 6.73 138.75 0.93 13.01 15 5 C 0.58 29.57 2.52 85.63 0.22 29.79 15 6 F -0.20 -10.57 17.01 44.97 0.76 -9.81 15 7 F -0.19 -9.79 16.60 44.97 0.75 -9.04 15 8 N -0.72 -41.36 5.48 -342.60 -1.88 -43.23 15 9 C -0.29 -17.40 9.68 84.03 0.81 -16.59 15 10 H 0.08 4.69 7.83 -2.91 -0.02 4.67 15 11 C -0.04 -2.60 5.50 84.86 0.47 -2.13 15 12 N -0.96 -58.87 13.06 21.65 0.28 -58.59 15 13 Si 0.99 46.65 29.55 68.60 2.03 48.68 15 14 H -0.27 -12.21 7.11 99.48 0.71 -11.51 15 15 H -0.28 -12.92 7.11 99.48 0.71 -12.22 15 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 17 N -0.51 -21.04 10.27 -178.75 -1.84 -22.87 15 18 C 0.19 6.02 7.33 84.74 0.62 6.64 15 19 Cl 0.01 0.29 27.65 -2.72 -0.08 0.22 15 20 C -0.14 -3.25 5.92 -19.67 -0.12 -3.36 15 21 C -0.11 -1.21 8.91 71.24 0.64 -0.58 15 22 H 0.11 1.20 8.14 -2.39 -0.02 1.18 15 23 H 0.09 1.30 8.14 -2.38 -0.02 1.28 15 24 H 0.13 0.69 6.82 -2.39 -0.02 0.67 15 25 H 0.39 23.52 7.66 -92.71 -0.71 22.81 15 26 H 0.26 15.39 8.31 -92.70 -0.77 14.62 15 27 H 0.11 0.75 8.14 -2.39 -0.02 0.73 15 28 H 0.08 0.94 7.03 -2.39 -0.02 0.92 15 29 H 0.11 0.60 6.83 -2.38 -0.02 0.59 15 Total: -1.00 -75.40 282.46 3.36 -72.04 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.51 Total: 12.05 kcal Atomic # 6 Polarization: 26.33 SS G_CDS: 4.53 Total: 30.86 kcal Atomic # 7 Polarization: -139.85 SS G_CDS: -5.15 Total: -145.00 kcal Atomic # 9 Polarization: -20.36 SS G_CDS: 1.51 Total: -18.85 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.22 kcal Total: -75.40 3.36 -72.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534016.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.401 kcal (2) G-P(sol) polarization free energy of solvation -75.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds