Wall clock time and date at job start Mon Mar 30 2020 01:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39892 * 109.47298 * 2 1 4 4 F 1.39904 * 109.47229 * 239.99725 * 2 1 3 5 5 C 1.53007 * 109.47131 * 120.00070 * 2 1 3 6 6 N 1.46498 * 109.46715 * 179.97438 * 5 2 1 7 7 C 1.38540 * 119.99922 * 179.97438 * 6 5 2 8 8 C 1.40049 * 120.44672 * 0.02562 * 7 6 5 9 9 C 1.38799 * 118.59414 * 180.02562 * 8 7 6 10 10 Cl 1.73599 * 120.34072 * 179.97438 * 9 8 7 11 11 N 1.32212 * 119.32286 * 359.97438 * 9 8 7 12 12 C 1.33418 * 120.85893 * 0.02562 * 11 9 8 13 13 C 1.41573 * 119.23144 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99748 * 173.64653 * 13 12 11 15 15 C 1.40049 * 120.00572 * 353.64374 * 13 12 11 16 16 N 1.30692 * 119.99799 * 6.31996 * 15 13 12 17 17 Si 1.86800 * 120.00509 * 186.31872 * 15 13 12 18 18 H 1.48499 * 109.47028 * 94.98296 * 17 15 13 19 19 H 1.48498 * 109.47164 * 214.98656 * 17 15 13 20 20 H 1.48497 * 109.47054 * 334.98541 * 17 15 13 21 21 N 1.32566 * 120.45445 * 179.72611 * 7 6 5 22 22 H 1.09004 * 109.46926 * 299.99619 * 1 2 3 23 23 H 1.08996 * 109.47206 * 59.99998 * 1 2 3 24 24 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46996 * 59.99654 * 5 2 1 26 26 H 1.08998 * 109.46681 * 299.99638 * 5 2 1 27 27 H 0.97003 * 120.00624 * 0.02562 * 6 5 2 28 28 H 1.07995 * 120.70313 * 359.97427 * 8 7 6 29 29 H 0.97001 * 120.00483 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9964 -0.6596 -1.1423 5 6 2.0400 -0.7213 1.2493 6 7 3.5050 -0.7218 1.2489 7 6 4.1978 -1.3213 2.2881 8 6 3.5071 -1.9301 3.3434 9 6 4.2396 -2.5187 4.3649 10 17 3.4299 -3.2854 5.6954 11 7 5.5605 -2.4896 4.3142 12 6 6.1935 -1.9027 3.2969 13 6 7.6091 -1.8911 3.2778 14 1 8.1343 -1.5121 2.4135 15 6 8.3284 -2.3711 4.3794 16 7 7.6989 -2.9424 5.3721 17 14 10.1873 -2.1946 4.4301 18 1 10.5475 -0.9642 5.1795 19 1 10.7785 -3.3771 5.1064 20 1 10.7137 -2.1023 3.0446 21 7 5.5234 -1.3317 2.2941 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6766 -1.7489 1.2493 26 1 1.6767 -0.2074 2.1392 27 1 3.9901 -0.3017 0.5214 28 1 2.4273 -1.9405 3.3625 29 1 8.1971 -3.2752 6.1351 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162228049.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:24 Heat of formation + Delta-G solvation = -83.638744 kcal Electronic energy + Delta-G solvation = -18831.888722 eV Core-core repulsion = 15257.749729 eV Total energy + Delta-G solvation = -3574.138993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.049 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.02045 -48.02749 -40.94748 -37.62470 -37.28359 -35.42184 -33.71592 -32.71234 -31.14190 -28.37065 -27.34196 -24.12996 -23.45948 -22.64682 -19.88234 -18.78027 -18.68751 -18.09895 -17.30456 -16.92835 -16.53327 -15.89711 -15.76093 -15.41821 -15.05701 -15.04317 -14.58484 -14.49227 -14.34064 -13.71918 -13.34382 -13.22321 -13.14729 -13.07642 -12.84215 -12.73319 -12.04385 -12.02306 -11.88193 -11.73417 -10.96760 -10.93635 -10.16877 -9.46187 -8.94962 -8.46978 -6.81814 0.61017 1.08375 1.10739 1.42083 1.52879 1.58409 2.10240 2.23219 2.67340 2.72223 3.11594 3.41705 3.60539 3.83106 4.18151 4.32514 4.37377 4.54173 4.58857 4.64007 4.82527 4.91394 5.04407 5.08662 5.25832 5.90770 6.13058 6.37033 6.59092 6.66392 7.14712 8.16122 8.34299 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.005013 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.360248 B = 5584.115158 C = 6751.037436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.277 3.723 3 F -0.211 7.211 4 F -0.211 7.211 5 C 0.090 3.910 6 N -0.722 5.722 7 C 0.450 3.550 8 C -0.397 4.397 9 C 0.247 3.753 10 Cl -0.053 7.053 11 N -0.562 5.562 12 C 0.409 3.591 13 C -0.428 4.428 14 H 0.094 0.906 15 C 0.025 3.975 16 N -0.737 5.737 17 Si 1.001 2.999 18 H -0.262 1.262 19 H -0.262 1.262 20 H -0.255 1.255 21 N -0.667 5.667 22 H 0.110 0.890 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.401 0.599 28 H 0.147 0.853 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.097 3.232 -5.213 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.240 3.760 3 F -0.192 7.192 4 F -0.192 7.192 5 C -0.035 4.035 6 N -0.358 5.358 7 C 0.202 3.798 8 C -0.430 4.430 9 C 0.068 3.932 10 Cl -0.025 7.025 11 N -0.285 5.285 12 C 0.172 3.828 13 C -0.463 4.463 14 H 0.112 0.888 15 C -0.200 4.200 16 N -0.359 5.359 17 Si 0.820 3.180 18 H -0.186 1.186 19 H -0.186 1.186 20 H -0.178 1.178 21 N -0.398 5.398 22 H 0.129 0.871 23 H 0.112 0.888 24 H 0.129 0.871 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.236 0.764 28 H 0.165 0.835 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.294 3.024 -4.866 12.664 hybrid contribution 0.051 0.134 -0.094 0.172 sum -11.243 3.158 -4.960 12.687 Atomic orbital electron populations 1.22772 0.86871 1.07488 1.07045 1.21772 0.96629 0.74821 0.82746 1.93016 1.91024 1.38318 1.96821 1.93019 1.91025 1.81100 1.54038 1.22621 0.79905 1.03326 0.97648 1.43948 1.05137 1.62778 1.23974 1.18390 0.88422 0.86641 0.86375 1.21186 1.00781 1.20724 1.00266 1.21920 0.91458 0.91641 0.88213 1.98288 1.76614 1.80232 1.47343 1.68593 1.06566 1.25272 1.28048 1.19848 0.94724 0.86148 0.82081 1.19710 0.88229 1.35290 1.03040 0.88799 1.27078 1.06594 0.92512 0.93781 1.70212 1.39687 1.20918 1.05039 0.84921 0.74023 0.79117 0.79983 1.18619 1.18615 1.17841 1.68233 1.06952 1.32540 1.32100 0.87094 0.88784 0.87088 0.87692 0.87696 0.76391 0.83501 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.38 71.98 0.68 -1.37 15 2 C 0.28 5.73 2.06 30.60 0.06 5.79 15 3 F -0.21 -5.32 16.92 44.97 0.76 -4.56 15 4 F -0.21 -5.33 16.92 44.97 0.76 -4.56 15 5 C 0.09 2.15 4.44 86.38 0.38 2.53 15 6 N -0.72 -25.44 5.57 -344.55 -1.92 -27.36 15 7 C 0.45 20.42 7.71 133.39 1.03 21.44 15 8 C -0.40 -17.21 9.23 22.84 0.21 -16.99 15 9 C 0.25 12.12 7.33 84.77 0.62 12.74 15 10 Cl -0.05 -2.15 29.15 -2.72 -0.08 -2.23 15 11 N -0.56 -31.92 7.89 -185.04 -1.46 -33.38 15 12 C 0.41 23.67 7.36 135.16 0.99 24.66 15 13 C -0.43 -23.85 9.37 23.53 0.22 -23.63 15 14 H 0.09 5.05 7.86 -2.91 -0.02 5.03 15 15 C 0.03 1.27 5.49 85.30 0.47 1.74 15 16 N -0.74 -39.26 11.45 21.84 0.25 -39.01 15 17 Si 1.00 37.73 29.56 68.60 2.03 39.76 15 18 H -0.26 -9.53 7.11 99.48 0.71 -8.82 15 19 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 20 H -0.25 -9.34 7.11 99.48 0.71 -8.64 15 21 N -0.67 -35.89 10.39 -191.54 -1.99 -37.88 15 22 H 0.11 0.86 8.14 -2.39 -0.02 0.84 15 23 H 0.09 0.93 8.14 -2.39 -0.02 0.91 15 24 H 0.11 0.86 8.14 -2.38 -0.02 0.84 15 25 H 0.11 2.21 7.97 -2.39 -0.02 2.19 15 26 H 0.11 2.21 7.97 -2.39 -0.02 2.19 15 27 H 0.40 14.37 8.48 -92.71 -0.79 13.58 15 28 H 0.15 5.11 6.85 -2.91 -0.02 5.09 15 29 H 0.29 13.59 8.29 -92.71 -0.77 12.82 15 Total: -1.00 -68.27 283.38 3.44 -64.83 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.43 Total: 17.49 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 4.67 Total: 26.91 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -5.12 Total: -137.63 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 1.52 Total: -9.13 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.08 Total: -2.23 kcal Total: -68.27 3.44 -64.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162228049.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.814 kcal (2) G-P(sol) polarization free energy of solvation -68.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds