Wall clock time and date at job start Mon Mar 30 2020 01:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29320 * 1 3 3 Si 1.86800 * 120.00428 * 2 1 4 4 H 1.48498 * 109.46875 * 240.00631 * 3 2 1 5 5 H 1.48498 * 109.46840 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46929 * 120.00084 * 3 2 1 7 7 C 1.46816 * 119.99530 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99364 * 180.02562 * 7 2 1 9 9 N 1.32764 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.39035 * 120.00177 * 180.02562 * 9 7 2 11 11 N 1.32464 * 119.69940 * 0.28758 * 10 9 7 12 12 C 1.31794 * 121.64017 * 180.29195 * 11 10 9 13 13 C 1.38270 * 120.85696 * 359.70465 * 12 11 10 14 14 N 1.48012 * 120.34083 * 180.02562 * 13 12 11 15 15 O 1.31704 * 120.00251 * 179.97438 * 14 13 12 16 16 O 1.31700 * 120.00192 * 359.97438 * 14 13 12 17 17 C 1.38761 * 119.31973 * 0.02562 * 13 12 11 18 18 C 1.38439 * 118.49165 * 359.97438 * 17 13 12 19 19 C 1.50703 * 120.45401 * 180.02562 * 18 17 13 20 20 F 1.39905 * 109.47157 * 0.02562 * 19 18 17 21 21 F 1.39900 * 109.47159 * 240.00528 * 19 18 17 22 22 F 1.39897 * 109.47274 * 120.00219 * 19 18 17 23 23 H 0.96999 * 119.99781 * 359.97438 * 1 2 3 24 24 H 0.97001 * 120.00391 * 359.97438 * 9 7 2 25 25 H 1.07999 * 119.57283 * 179.67956 * 12 11 10 26 26 H 1.07999 * 120.75837 * 180.02562 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2273 1.6177 0.0000 4 1 3.0809 1.6963 -1.2126 5 1 1.2624 2.7464 0.0006 6 1 3.0810 1.6962 1.2124 7 6 2.0272 -1.2715 -0.0006 8 1 3.1071 -1.2715 -0.0002 9 7 1.3633 -2.4213 -0.0006 10 6 2.0584 -3.6254 -0.0006 11 7 3.3830 -3.6186 0.0052 12 6 4.0802 -4.7370 -0.0003 13 6 3.4480 -5.9667 -0.0063 14 7 4.2423 -7.2156 -0.0118 15 8 3.6332 -8.3834 -0.0170 16 8 5.5581 -7.1593 -0.0116 17 6 2.0613 -6.0179 -0.0070 18 6 1.3565 -4.8264 -0.0011 19 6 -0.1505 -4.8304 -0.0010 20 9 -0.6134 -6.1506 -0.0069 21 9 -0.6187 -4.1666 -1.1401 22 9 -0.6185 -4.1777 1.1444 23 1 -0.4850 0.8401 0.0004 24 1 0.3933 -2.4213 0.0002 25 1 5.1592 -4.6924 -0.0005 26 1 1.5436 -6.9657 -0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183236.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:00 Heat of formation + Delta-G solvation = -100.312279 kcal Electronic energy + Delta-G solvation = -21422.751941 eV Core-core repulsion = 17283.720460 eV Total energy + Delta-G solvation = -4139.031481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.046 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.85501 -47.36838 -47.29772 -39.84773 -37.57536 -36.36669 -33.72472 -33.09450 -32.31102 -30.29015 -26.34968 -25.81192 -24.63008 -22.38549 -21.44443 -19.61696 -18.35652 -18.16036 -18.14012 -17.65061 -16.80498 -16.18659 -15.98591 -15.19209 -14.77942 -14.73752 -14.26545 -14.01157 -13.77678 -13.70662 -13.59401 -13.47191 -13.40730 -12.91549 -12.37720 -12.22395 -11.96274 -11.76327 -11.27205 -11.18071 -10.09071 -10.01000 -9.90829 -9.63792 -9.54002 -9.01087 -8.25495 -8.25109 -4.62777 0.36082 1.58156 2.06532 2.39139 2.49446 2.55128 2.56155 3.05265 3.08151 3.53156 3.76173 4.17794 4.24158 4.40307 4.82645 5.19263 5.36816 5.58254 5.62935 5.84981 6.09395 6.25785 6.49398 6.75879 7.02795 7.35667 7.73457 7.87649 8.20015 8.72700 8.77291 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.006614 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.337729 B = 4232.110888 C = 5551.944153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.032 3.968 3 Si 0.965 3.035 4 H -0.248 1.248 5 H -0.266 1.266 6 H -0.248 1.248 7 C -0.218 4.218 8 H 0.157 0.843 9 N -0.391 5.391 10 C 0.208 3.792 11 N -0.489 5.489 12 C 0.228 3.772 13 C -0.193 4.193 14 N 0.052 4.948 15 O -0.313 6.313 16 O -0.303 6.303 17 C 0.069 3.931 18 C -0.303 4.303 19 C 0.517 3.483 20 F -0.179 7.179 21 F -0.182 7.182 22 F -0.182 7.182 23 H 0.318 0.682 24 H 0.414 0.586 25 H 0.165 0.835 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 6.647 0.010 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.172 1.172 5 H -0.190 1.190 6 H -0.172 1.172 7 C -0.360 4.360 8 H 0.174 0.826 9 N 0.023 4.977 10 C -0.033 4.033 11 N -0.206 5.206 12 C 0.041 3.959 13 C -0.301 4.301 14 N 0.476 4.524 15 O -0.467 6.467 16 O -0.459 6.459 17 C 0.045 3.955 18 C -0.313 4.313 19 C 0.462 3.538 20 F -0.161 7.161 21 F -0.164 7.164 22 F -0.164 7.164 23 H 0.132 0.868 24 H 0.252 0.748 25 H 0.182 0.818 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.117 8.041 0.017 9.034 hybrid contribution -0.894 -0.570 -0.004 1.061 sum -5.011 7.471 0.013 8.996 Atomic orbital electron populations 1.68626 1.08900 1.34515 1.25656 1.28014 0.95707 1.02987 0.92824 0.85301 0.79534 0.74925 0.81806 1.17172 1.18999 1.17179 1.22364 0.96497 0.81528 1.35648 0.82570 1.40774 1.10213 1.04267 1.42433 1.16760 0.88750 0.82724 1.15098 1.67098 1.05069 1.28279 1.20150 1.21875 0.99798 0.84468 0.89782 1.20077 0.90355 0.83312 1.36397 1.49627 1.02287 1.03056 0.97450 1.96130 1.72809 1.13470 1.64302 1.96121 0.89975 1.96002 1.63825 1.20367 0.91748 0.97312 0.86106 1.19255 0.89600 0.94534 1.27921 1.18186 0.88907 0.73304 0.73422 1.93136 1.90540 1.36138 1.96271 1.93193 1.90534 1.80929 1.51720 1.93193 1.90533 1.81440 1.51213 0.86841 0.74779 0.81783 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -13.15 13.08 56.00 0.73 -12.42 15 2 C 0.03 0.54 5.70 -15.14 -0.09 0.45 15 3 Si 0.97 12.53 29.65 -169.99 -5.04 7.50 15 4 H -0.25 -3.26 7.11 56.52 0.40 -2.86 15 5 H -0.27 -3.34 7.11 56.52 0.40 -2.94 15 6 H -0.25 -3.26 7.11 56.52 0.40 -2.86 15 7 C -0.22 -4.08 9.94 -13.68 -0.14 -4.22 15 8 H 0.16 2.87 7.11 -52.49 -0.37 2.50 15 9 N -0.39 -7.68 5.06 -9.92 -0.05 -7.73 15 10 C 0.21 4.25 7.32 -154.95 -1.13 3.11 15 11 N -0.49 -9.98 9.03 -12.40 -0.11 -10.09 15 12 C 0.23 4.57 10.73 -17.56 -0.19 4.38 15 13 C -0.19 -4.16 6.91 -79.75 -0.55 -4.72 15 14 N 0.05 1.25 4.98 34.06 0.17 1.42 15 15 O -0.31 -7.84 19.23 -31.57 -0.61 -8.45 15 16 O -0.30 -7.41 19.17 -31.57 -0.61 -8.02 15 17 C 0.07 1.40 9.05 -39.31 -0.36 1.04 15 18 C -0.30 -5.97 5.40 -104.23 -0.56 -6.54 15 19 C 0.52 9.35 2.80 36.01 0.10 9.45 15 20 F -0.18 -3.10 16.05 2.25 0.04 -3.07 15 21 F -0.18 -3.28 16.24 2.25 0.04 -3.24 15 22 F -0.18 -3.28 16.29 2.25 0.04 -3.25 15 23 H 0.32 4.82 8.26 -40.82 -0.34 4.48 15 24 H 0.41 8.05 5.38 -40.82 -0.22 7.83 15 25 H 0.17 2.96 7.58 -52.49 -0.40 2.57 15 26 H 0.15 2.81 6.86 -52.49 -0.36 2.45 15 LS Contribution 263.16 15.07 3.97 3.97 Total: -1.00 -24.42 263.16 -4.83 -29.25 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -0.48 Total: 11.16 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.91 Total: 2.97 kcal Atomic # 7 Polarization: -29.56 SS G_CDS: 0.74 Total: -28.82 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -1.21 Total: -16.47 kcal Atomic # 9 Polarization: -9.67 SS G_CDS: 0.11 Total: -9.56 kcal Atomic # 14 Polarization: 12.53 SS G_CDS: -5.04 Total: 7.50 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -24.42 -4.83 -29.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183236.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.058 kcal (2) G-P(sol) polarization free energy of solvation -24.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds