Wall clock time and date at job start Mon Mar 30 2020 01:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86809 * 119.99562 * 2 1 4 4 H 1.48501 * 109.46667 * 180.27695 * 3 2 1 5 5 H 1.48500 * 109.47133 * 300.27501 * 3 2 1 6 6 H 1.48493 * 109.47037 * 60.27554 * 3 2 1 7 7 C 1.38925 * 120.00507 * 180.28009 * 2 1 3 8 8 H 1.07999 * 120.00209 * 179.72496 * 7 2 1 9 9 N 1.36790 * 119.99733 * 359.71841 * 7 2 1 10 10 C 1.38355 * 120.00243 * 180.02562 * 9 7 2 11 11 C 1.39712 * 120.04366 * 0.02562 * 10 9 7 12 12 C 1.38274 * 118.02992 * 179.97438 * 11 10 9 13 13 C 1.50702 * 121.00198 * 180.02562 * 12 11 10 14 14 F 1.39898 * 109.46947 * 359.97438 * 13 12 11 15 15 F 1.39894 * 109.47441 * 119.99790 * 13 12 11 16 16 F 1.39901 * 109.46770 * 239.99903 * 13 12 11 17 17 C 1.40147 * 118.00040 * 359.97438 * 12 11 10 18 18 C 1.47711 * 120.09554 * 180.02562 * 17 12 11 19 19 O 1.21480 * 119.99976 * 359.97438 * 18 17 12 20 20 O 1.34735 * 119.99894 * 179.97438 * 18 17 12 21 21 N 1.32879 * 119.80831 * 0.02562 * 17 12 11 22 22 N 1.28360 * 122.10196 * 359.73091 * 21 17 12 23 23 H 0.97000 * 120.00526 * 359.72512 * 1 2 3 24 24 H 0.97008 * 120.00352 * 0.02562 * 9 7 2 25 25 H 1.07996 * 120.98300 * 359.97438 * 11 10 9 26 26 H 0.96703 * 116.99669 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6179 0.0000 4 1 3.7087 1.3465 -0.0068 5 1 1.8849 2.3995 -1.2091 6 1 1.8950 2.3936 1.2158 7 6 2.0095 -1.2030 -0.0059 8 1 3.0895 -1.2030 -0.0104 9 7 1.3256 -2.3877 -0.0059 10 6 2.0174 -3.5859 -0.0112 11 6 3.4145 -3.5869 -0.0160 12 6 4.0634 -4.8080 -0.0207 13 6 5.5683 -4.8872 -0.0255 14 9 6.1033 -3.5946 -0.0249 15 9 6.0029 -5.5728 1.1139 16 9 5.9957 -5.5679 -1.1707 17 6 3.2794 -5.9697 -0.0197 18 6 3.9244 -7.2985 -0.0240 19 8 5.1361 -7.3855 -0.0289 20 8 3.1689 -8.4141 -0.0226 21 7 1.9542 -5.8723 -0.0149 22 7 1.3537 -4.7379 -0.0060 23 1 -0.4851 0.8400 0.0040 24 1 0.3556 -2.3878 -0.0021 25 1 3.9712 -2.6615 -0.0161 26 1 3.6361 -9.2607 -0.0259 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183320.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:08 Heat of formation + Delta-G solvation = -195.251265 kcal Electronic energy + Delta-G solvation = -21602.709564 eV Core-core repulsion = 17459.561220 eV Total energy + Delta-G solvation = -4143.148345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.046 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.10761 -48.65263 -48.50695 -41.91960 -40.64070 -38.08111 -37.03064 -34.63865 -34.61191 -31.71134 -28.04539 -27.80944 -25.66080 -24.04070 -22.86971 -20.80979 -19.85178 -19.43553 -19.37313 -19.06921 -18.42467 -17.96159 -17.41247 -16.86677 -16.23708 -15.72241 -15.68315 -15.38111 -15.37317 -15.20891 -14.94313 -14.69975 -14.66876 -14.28772 -13.85801 -13.63649 -13.34721 -12.83930 -12.68667 -12.52173 -12.42180 -12.08828 -11.62852 -11.48262 -11.19030 -10.62582 -9.61358 -8.97482 -6.16109 -0.57901 -0.16806 1.31450 1.41210 1.56217 1.57281 1.58408 1.97679 2.09774 2.47457 2.48854 2.69007 2.91755 3.14714 3.42971 3.48155 3.86615 3.94898 4.21698 4.44841 4.85663 4.94388 5.02615 5.36354 5.59089 6.25254 6.71333 6.88053 7.07588 7.91830 8.15696 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.025016 B = 0.005901 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.012251 B = 4743.594960 C = 5688.116269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.003 3.997 3 Si 1.012 2.988 4 H -0.247 1.247 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.319 4.319 8 H 0.134 0.866 9 N -0.457 5.457 10 C 0.244 3.756 11 C -0.131 4.131 12 C -0.102 4.102 13 C 0.529 3.471 14 F -0.174 7.174 15 F -0.169 7.169 16 F -0.169 7.169 17 C -0.119 4.119 18 C 0.559 3.441 19 O -0.538 6.538 20 O -0.493 6.493 21 N -0.123 5.123 22 N -0.345 5.345 23 H 0.299 0.701 24 H 0.411 0.589 25 H 0.171 0.829 26 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.586 -2.550 -0.020 7.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.206 4.206 3 Si 0.832 3.168 4 H -0.170 1.170 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.451 4.451 8 H 0.151 0.849 9 N -0.054 5.054 10 C -0.004 4.004 11 C -0.163 4.163 12 C -0.112 4.112 13 C 0.474 3.526 14 F -0.156 7.156 15 F -0.150 7.150 16 F -0.150 7.150 17 C -0.268 4.268 18 C 0.403 3.597 19 O -0.428 6.428 20 O -0.305 6.305 21 N 0.021 4.979 22 N -0.213 5.213 23 H 0.109 0.891 24 H 0.247 0.753 25 H 0.188 0.812 26 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 5.193 -2.418 -0.016 5.728 hybrid contribution 1.349 0.764 -0.005 1.550 sum 6.541 -1.654 -0.022 6.747 Atomic orbital electron populations 1.69708 1.08044 1.32137 1.39965 1.26650 0.96544 1.03976 0.93467 0.84554 0.79069 0.74480 0.78676 1.17026 1.19414 1.19393 1.20731 0.94959 0.81808 1.47590 0.84901 1.41073 1.09836 1.01924 1.52615 1.19743 0.89707 0.88285 1.02663 1.21435 0.93571 0.98002 1.03314 1.20565 0.92446 0.94730 1.03482 1.17613 0.87063 0.73382 0.74563 1.93163 1.87921 1.38168 1.96302 1.93190 1.90909 1.79939 1.50966 1.93191 1.91113 1.80181 1.50526 1.20198 0.92106 0.90813 1.23709 1.19747 0.83919 0.84291 0.71729 1.90902 1.15093 1.87739 1.49029 1.84620 1.43496 1.17367 1.85004 1.72807 1.07252 1.17038 1.00787 1.72912 1.29931 0.93280 1.25192 0.89063 0.75262 0.81201 0.70842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -37.60 13.05 21.66 0.28 -37.32 15 2 C 0.00 0.13 5.50 84.91 0.47 0.60 15 3 Si 1.01 31.24 29.55 68.60 2.03 33.27 15 4 H -0.25 -7.20 7.11 99.48 0.71 -6.49 15 5 H -0.27 -8.27 7.11 99.48 0.71 -7.56 15 6 H -0.27 -8.26 7.11 99.48 0.71 -7.55 15 7 C -0.32 -13.20 9.55 84.08 0.80 -12.39 15 8 H 0.13 5.01 5.68 -2.91 -0.02 5.00 15 9 N -0.46 -19.68 5.42 -188.89 -1.02 -20.70 15 10 C 0.24 10.45 7.70 133.26 1.03 11.48 15 11 C -0.13 -5.13 8.77 22.63 0.20 -4.93 15 12 C -0.10 -3.98 5.43 -19.39 -0.11 -4.08 15 13 C 0.53 19.17 2.78 71.24 0.20 19.36 15 14 F -0.17 -5.74 16.11 44.97 0.72 -5.02 15 15 F -0.17 -6.26 15.12 44.97 0.68 -5.58 15 16 F -0.17 -6.26 15.12 44.97 0.68 -5.58 15 17 C -0.12 -4.85 6.81 41.95 0.29 -4.56 15 18 C 0.56 20.18 8.16 70.33 0.57 20.75 15 19 O -0.54 -20.29 12.27 19.90 0.24 -20.04 15 20 O -0.49 -14.16 13.26 -56.45 -0.75 -14.91 15 21 N -0.12 -5.33 11.30 -48.50 -0.55 -5.87 15 22 N -0.34 -15.41 11.55 -55.14 -0.64 -16.04 15 23 H 0.30 11.87 8.31 -92.71 -0.77 11.10 15 24 H 0.41 18.28 8.01 -92.70 -0.74 17.54 15 25 H 0.17 5.98 5.28 -2.91 -0.02 5.96 15 26 H 0.43 7.06 9.11 -74.06 -0.67 6.39 15 Total: -1.00 -52.23 255.18 5.03 -47.20 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.10 Total: 24.39 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: 3.45 Total: 26.22 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -1.93 Total: -79.94 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.50 Total: -34.96 kcal Atomic # 9 Polarization: -18.26 SS G_CDS: 2.08 Total: -16.17 kcal Atomic # 14 Polarization: 31.24 SS G_CDS: 2.03 Total: 33.27 kcal Total: -52.23 5.03 -47.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183320.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.055 kcal (2) G-P(sol) polarization free energy of solvation -52.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds