Wall clock time and date at job start Mon Mar 30 2020 01:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38659 * 120.06324 * 2 1 4 4 C 1.38820 * 117.97696 * 180.26004 * 3 2 1 5 5 C 1.50708 * 121.01478 * 179.74262 * 4 3 2 6 6 F 1.39898 * 109.47137 * 355.69102 * 5 4 3 7 7 F 1.39896 * 109.46719 * 235.68704 * 5 4 3 8 8 N 1.46497 * 109.46782 * 115.69129 * 5 4 3 9 9 C 1.46500 * 120.00195 * 353.07995 * 8 5 4 10 10 C 1.36936 * 119.99892 * 173.08554 * 8 5 4 11 11 H 1.07997 * 120.00028 * 8.01083 * 10 8 5 12 12 C 1.38819 * 120.00303 * 188.01913 * 10 8 5 13 13 N 1.31618 * 119.99708 * 8.21686 * 12 10 8 14 14 Si 1.86801 * 120.00160 * 188.22046 * 12 10 8 15 15 H 1.48501 * 109.46902 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47028 * 119.99858 * 14 12 10 17 17 H 1.48504 * 109.46859 * 239.99559 * 14 12 10 18 18 C 1.38768 * 117.96109 * 359.47069 * 4 3 2 19 19 Cl 1.73598 * 120.09117 * 180.29582 * 18 4 3 20 20 N 1.32028 * 119.81643 * 0.27691 * 18 4 3 21 21 N 1.28350 * 122.16052 * 359.97438 * 20 18 4 22 22 H 1.09004 * 109.47150 * 270.28121 * 1 2 3 23 23 H 1.09002 * 109.46921 * 30.27584 * 1 2 3 24 24 H 1.09003 * 109.47165 * 150.27826 * 1 2 3 25 25 H 1.07996 * 121.00643 * 0.02576 * 3 2 1 26 26 H 1.08995 * 109.47321 * 355.18086 * 9 8 5 27 27 H 1.09001 * 109.47293 * 115.18074 * 9 8 5 28 28 H 1.08998 * 109.47453 * 235.17821 * 9 8 5 29 29 H 0.96996 * 120.00294 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.2001 0.0000 4 6 3.5889 1.1495 -0.0056 5 6 4.4119 2.4120 -0.0117 6 9 3.5643 3.5207 -0.1098 7 9 5.2849 2.3941 -1.1047 8 7 5.1852 2.4968 1.2296 9 6 4.9623 1.5212 2.2996 10 6 6.1164 3.4879 1.3898 11 1 6.1913 4.2814 0.6610 12 6 6.9641 3.4728 2.4890 13 7 6.9860 2.4278 3.2888 14 14 8.0737 4.9357 2.8329 15 1 7.8611 5.9737 1.7924 16 1 7.7504 5.4991 4.1683 17 1 9.4923 4.4968 2.8112 18 6 4.1945 -0.0990 0.0005 19 17 5.9258 -0.2266 0.0018 20 7 3.4503 -1.1896 0.0058 21 7 2.1677 -1.1415 0.0059 22 1 -0.3634 0.0050 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3633 -0.8925 -0.5095 25 1 1.6792 2.1452 0.0004 26 1 4.1324 0.8685 2.0291 27 1 5.8633 0.9241 2.4404 28 1 4.7254 2.0453 3.2255 29 1 7.5780 2.4173 4.0571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165096123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:39 Heat of formation + Delta-G solvation = -1.233153 kcal Electronic energy + Delta-G solvation = -20198.963058 eV Core-core repulsion = 16628.397439 eV Total energy + Delta-G solvation = -3570.565618 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.049 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.13097 -46.23616 -41.16104 -36.68081 -35.68352 -33.99705 -33.35589 -30.87163 -28.36498 -26.36082 -26.20420 -24.28957 -22.96328 -20.67055 -18.18230 -17.74470 -17.26333 -16.67154 -16.06570 -15.84740 -15.29342 -14.31704 -14.22631 -13.83599 -13.45624 -13.18392 -13.03542 -12.67225 -12.60757 -12.46939 -12.35074 -11.89223 -11.47032 -11.26264 -11.11521 -10.92879 -10.88934 -10.73162 -10.28735 -10.18577 -9.89992 -9.65974 -9.22391 -8.88146 -7.56174 -5.88072 -3.46206 0.51008 0.69483 1.89044 3.27860 3.29892 3.36055 3.39433 3.58791 3.96208 4.24047 4.29028 4.59205 4.69007 4.71185 5.10434 5.18735 5.31229 5.36447 5.45734 5.57633 5.78368 5.99114 6.07142 6.25470 7.21338 7.46720 7.67478 8.00247 8.49669 8.90590 9.43476 9.84281 11.09999 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.007152 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.145383 B = 3914.006838 C = 4237.730529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.063 3.937 3 C -0.078 4.078 4 C -0.112 4.112 5 C 0.554 3.446 6 F -0.208 7.208 7 F -0.195 7.195 8 N -0.598 5.598 9 C 0.158 3.842 10 C -0.267 4.267 11 H 0.083 0.917 12 C 0.014 3.986 13 N -0.907 5.907 14 Si 0.921 3.079 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.287 1.287 18 C 0.146 3.854 19 Cl 0.035 6.965 20 N -0.232 5.232 21 N -0.221 5.221 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.166 0.834 26 H -0.009 1.009 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.171 -3.473 -5.565 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.082 4.082 3 C -0.107 4.107 4 C -0.126 4.126 5 C 0.427 3.573 6 F -0.190 7.190 7 F -0.176 7.176 8 N -0.327 5.327 9 C 0.015 3.985 10 C -0.395 4.395 11 H 0.101 0.899 12 C -0.184 4.184 13 N -0.552 5.552 14 Si 0.749 3.251 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.213 1.213 18 C -0.025 4.025 19 Cl 0.064 6.936 20 N -0.076 5.076 21 N -0.064 5.064 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.184 0.816 26 H 0.009 0.991 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.924 -5.147 -5.411 12.420 hybrid contribution 0.883 2.431 0.176 2.592 sum -9.041 -2.716 -5.235 10.795 Atomic orbital electron populations 1.20679 0.86586 1.04264 1.03975 1.22946 0.99465 0.89796 0.95972 1.22292 0.92501 1.01117 0.94814 1.21370 0.95389 0.95657 1.00145 1.17546 0.79595 0.79459 0.80680 1.93037 1.71966 1.57601 1.96407 1.93077 1.70994 1.96514 1.57033 1.45042 1.42492 1.34580 1.10611 1.21483 0.97720 0.90537 0.88728 1.19262 1.10680 1.01203 1.08340 0.89926 1.24902 0.98197 0.97930 0.97411 1.70145 1.40174 1.27730 1.17163 0.85941 0.79826 0.81294 0.77997 1.20060 1.21281 1.21340 1.23405 0.91664 0.90787 0.96661 1.98503 1.01497 1.98227 1.95401 1.73022 0.99415 1.24897 1.10218 1.72946 1.00105 1.24619 1.08777 0.89473 0.89915 0.89692 0.81602 0.99102 0.90078 0.93791 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.19 36.00 0.37 -0.46 15 2 C 0.06 0.87 6.87 -82.41 -0.57 0.30 15 3 C -0.08 -1.17 9.25 -39.21 -0.36 -1.53 15 4 C -0.11 -2.10 3.60 -104.21 -0.38 -2.48 15 5 C 0.55 12.06 1.98 -5.19 -0.01 12.05 15 6 F -0.21 -4.36 16.01 2.25 0.04 -4.32 15 7 F -0.19 -4.36 15.83 2.25 0.04 -4.32 15 8 N -0.60 -14.84 2.78 -180.80 -0.50 -15.35 15 9 C 0.16 3.82 7.10 59.85 0.42 4.25 15 10 C -0.27 -7.21 9.54 -15.06 -0.14 -7.36 15 11 H 0.08 2.23 7.84 -52.49 -0.41 1.82 15 12 C 0.01 0.37 5.38 -17.43 -0.09 0.27 15 13 N -0.91 -24.99 9.68 55.49 0.54 -24.45 15 14 Si 0.92 21.36 29.56 -169.99 -5.03 16.34 15 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 18 C 0.15 2.81 5.74 -17.27 -0.10 2.71 15 19 Cl 0.04 0.70 25.18 -51.86 -1.31 -0.60 15 20 N -0.23 -4.29 11.49 32.89 0.38 -3.91 15 21 N -0.22 -3.63 11.43 33.60 0.38 -3.25 15 22 H 0.09 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.08 0.53 8.09 -51.93 -0.42 0.11 15 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.17 2.06 7.34 -52.49 -0.39 1.67 15 26 H -0.01 -0.21 4.96 -51.93 -0.26 -0.47 15 27 H 0.08 2.10 6.02 -51.93 -0.31 1.79 15 28 H 0.04 1.13 7.52 -51.93 -0.39 0.74 15 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 LS Contribution 269.30 15.07 4.06 4.06 Total: -1.00 -29.44 269.30 -4.42 -33.86 By element: Atomic # 1 Polarization: -3.63 SS G_CDS: -2.16 Total: -5.79 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -0.86 Total: 7.75 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.80 Total: -46.96 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -1.31 Total: -0.60 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.44 -4.42 -33.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165096123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.624 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds