Wall clock time and date at job start Mon Mar 30 2020 01:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38659 * 120.06324 * 2 1 4 4 C 1.38820 * 117.97696 * 180.26004 * 3 2 1 5 5 C 1.50708 * 121.01478 * 179.74262 * 4 3 2 6 6 F 1.39898 * 109.47137 * 355.69102 * 5 4 3 7 7 F 1.39896 * 109.46719 * 235.68704 * 5 4 3 8 8 N 1.46497 * 109.46782 * 115.69129 * 5 4 3 9 9 C 1.46500 * 120.00195 * 353.07995 * 8 5 4 10 10 C 1.36936 * 119.99892 * 173.08554 * 8 5 4 11 11 H 1.07997 * 120.00028 * 8.01083 * 10 8 5 12 12 C 1.38819 * 120.00303 * 188.01913 * 10 8 5 13 13 N 1.31618 * 119.99708 * 8.21686 * 12 10 8 14 14 Si 1.86801 * 120.00160 * 188.22046 * 12 10 8 15 15 H 1.48501 * 109.46902 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47028 * 119.99858 * 14 12 10 17 17 H 1.48504 * 109.46859 * 239.99559 * 14 12 10 18 18 C 1.38768 * 117.96109 * 359.47069 * 4 3 2 19 19 Cl 1.73598 * 120.09117 * 180.29582 * 18 4 3 20 20 N 1.32028 * 119.81643 * 0.27691 * 18 4 3 21 21 N 1.28350 * 122.16052 * 359.97438 * 20 18 4 22 22 H 1.09004 * 109.47150 * 270.28121 * 1 2 3 23 23 H 1.09002 * 109.46921 * 30.27584 * 1 2 3 24 24 H 1.09003 * 109.47165 * 150.27826 * 1 2 3 25 25 H 1.07996 * 121.00643 * 0.02576 * 3 2 1 26 26 H 1.08995 * 109.47321 * 355.18086 * 9 8 5 27 27 H 1.09001 * 109.47293 * 115.18074 * 9 8 5 28 28 H 1.08998 * 109.47453 * 235.17821 * 9 8 5 29 29 H 0.96996 * 120.00294 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.2001 0.0000 4 6 3.5889 1.1495 -0.0056 5 6 4.4119 2.4120 -0.0117 6 9 3.5643 3.5207 -0.1098 7 9 5.2849 2.3941 -1.1047 8 7 5.1852 2.4968 1.2296 9 6 4.9623 1.5212 2.2996 10 6 6.1164 3.4879 1.3898 11 1 6.1913 4.2814 0.6610 12 6 6.9641 3.4728 2.4890 13 7 6.9860 2.4278 3.2888 14 14 8.0737 4.9357 2.8329 15 1 7.8611 5.9737 1.7924 16 1 7.7504 5.4991 4.1683 17 1 9.4923 4.4968 2.8112 18 6 4.1945 -0.0990 0.0005 19 17 5.9258 -0.2266 0.0018 20 7 3.4503 -1.1896 0.0058 21 7 2.1677 -1.1415 0.0059 22 1 -0.3634 0.0050 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3633 -0.8925 -0.5095 25 1 1.6792 2.1452 0.0004 26 1 4.1324 0.8685 2.0291 27 1 5.8633 0.9241 2.4404 28 1 4.7254 2.0453 3.2255 29 1 7.5780 2.4173 4.0571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165096123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:38 Heat of formation + Delta-G solvation = -19.818926 kcal Electronic energy + Delta-G solvation = -20199.768997 eV Core-core repulsion = 16628.397439 eV Total energy + Delta-G solvation = -3571.371558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.049 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85000 -47.96106 -42.46490 -38.18312 -37.47137 -35.23756 -34.81334 -32.76941 -29.40870 -28.29389 -27.77488 -25.72431 -24.52591 -22.28884 -19.66699 -19.48997 -18.82018 -18.32164 -17.76294 -17.41721 -16.64760 -16.20685 -15.38077 -15.16133 -15.11849 -14.80356 -14.51495 -14.30404 -14.28270 -13.96998 -13.62831 -13.27811 -12.92806 -12.84201 -12.76067 -12.61852 -12.51009 -12.37731 -12.20023 -11.97450 -11.41558 -11.00787 -10.90107 -10.57244 -9.55981 -7.91297 -5.53151 -0.82742 -0.57102 0.46587 1.45886 1.46490 1.57640 1.97187 2.02523 2.42690 2.76205 2.89701 2.96597 3.20574 3.41548 3.46247 3.65742 4.01208 4.10860 4.36751 4.47997 4.63877 4.77581 4.92152 5.20202 5.24976 5.43599 5.63677 6.02155 6.87960 7.20729 7.43376 7.82830 9.04955 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.007152 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.145383 B = 3914.006838 C = 4237.730529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.081 3.919 3 C -0.061 4.061 4 C -0.136 4.136 5 C 0.553 3.447 6 F -0.203 7.203 7 F -0.202 7.202 8 N -0.611 5.611 9 C 0.180 3.820 10 C -0.283 4.283 11 H 0.076 0.924 12 C -0.030 4.030 13 N -0.928 5.928 14 Si 0.981 3.019 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.288 1.288 18 C 0.134 3.866 19 Cl 0.013 6.987 20 N -0.247 5.247 21 N -0.234 5.234 22 H 0.106 0.894 23 H 0.113 0.887 24 H 0.096 0.904 25 H 0.197 0.803 26 H 0.011 0.989 27 H 0.060 0.940 28 H 0.019 0.981 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 -2.916 -5.901 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.065 4.065 3 C -0.090 4.090 4 C -0.149 4.149 5 C 0.427 3.573 6 F -0.185 7.185 7 F -0.184 7.184 8 N -0.341 5.341 9 C 0.037 3.963 10 C -0.411 4.411 11 H 0.094 0.906 12 C -0.226 4.226 13 N -0.574 5.574 14 Si 0.808 3.192 15 H -0.194 1.194 16 H -0.210 1.210 17 H -0.214 1.214 18 C -0.038 4.038 19 Cl 0.041 6.959 20 N -0.090 5.090 21 N -0.077 5.077 22 H 0.125 0.875 23 H 0.131 0.869 24 H 0.115 0.885 25 H 0.214 0.786 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.123 -4.605 -5.769 14.193 hybrid contribution 1.389 2.243 0.226 2.648 sum -10.734 -2.362 -5.543 12.309 Atomic orbital electron populations 1.20957 0.82322 1.06390 1.05736 1.23739 1.01796 0.88193 0.92744 1.22748 0.90862 1.03074 0.92324 1.21208 0.96758 0.93849 1.03102 1.17655 0.79561 0.80745 0.79331 1.93021 1.71545 1.57635 1.96300 1.93048 1.71528 1.96646 1.57152 1.45117 1.42717 1.34274 1.11958 1.21096 0.97422 0.90024 0.87808 1.19419 1.11461 1.01807 1.08439 0.90571 1.25643 0.99482 1.00215 0.97272 1.70303 1.40684 1.29033 1.17331 0.85019 0.77830 0.78575 0.77809 1.19372 1.21003 1.21427 1.23325 0.90879 0.91309 0.98304 1.98486 1.03396 1.98298 1.95699 1.73001 1.00486 1.24796 1.10688 1.72928 0.99226 1.26124 1.09412 0.87544 0.86875 0.88549 0.78552 0.97094 0.92182 0.96193 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.19 71.23 0.73 -0.44 15 2 C 0.08 1.92 6.87 42.65 0.29 2.21 15 3 C -0.06 -1.63 9.25 22.51 0.21 -1.42 15 4 C -0.14 -4.94 3.60 -19.60 -0.07 -5.01 15 5 C 0.55 23.75 1.98 85.64 0.17 23.92 15 6 F -0.20 -8.21 16.01 44.97 0.72 -7.49 15 7 F -0.20 -9.09 15.83 44.97 0.71 -8.38 15 8 N -0.61 -30.48 2.78 -725.94 -2.02 -32.50 15 9 C 0.18 8.79 7.10 127.77 0.91 9.70 15 10 C -0.28 -15.39 9.54 84.04 0.80 -14.59 15 11 H 0.08 4.14 7.84 -2.91 -0.02 4.12 15 12 C -0.03 -1.64 5.38 84.86 0.46 -1.18 15 13 N -0.93 -51.87 9.68 21.65 0.21 -51.66 15 14 Si 0.98 43.95 29.56 68.60 2.03 45.98 15 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 17 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 18 C 0.13 5.10 5.74 84.79 0.49 5.59 15 19 Cl 0.01 0.52 25.18 -2.72 -0.07 0.46 15 20 N -0.25 -8.94 11.49 -49.87 -0.57 -9.51 15 21 N -0.23 -7.18 11.43 -47.62 -0.54 -7.72 15 22 H 0.11 1.03 8.14 -2.38 -0.02 1.01 15 23 H 0.11 0.78 8.09 -2.39 -0.02 0.76 15 24 H 0.10 1.04 8.14 -2.39 -0.02 1.02 15 25 H 0.20 4.01 7.34 -2.91 -0.02 3.98 15 26 H 0.01 0.47 4.96 -2.39 -0.01 0.46 15 27 H 0.06 3.19 6.02 -2.39 -0.01 3.18 15 28 H 0.02 1.03 7.52 -2.39 -0.02 1.02 15 29 H 0.25 13.73 8.31 -92.71 -0.77 12.96 15 Total: -1.00 -64.11 269.30 5.65 -58.46 By element: Atomic # 1 Polarization: -7.61 SS G_CDS: 1.20 Total: -6.41 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 3.98 Total: 18.77 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -2.92 Total: -101.40 kcal Atomic # 9 Polarization: -17.29 SS G_CDS: 1.43 Total: -15.86 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -0.07 Total: 0.46 kcal Total: -64.11 5.65 -58.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165096123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.643 kcal (2) G-P(sol) polarization free energy of solvation -64.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds