Wall clock time and date at job start Mon Mar 30 2020 01:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47100 * 2 1 4 4 C 1.46907 * 111.00099 * 158.37363 * 3 2 1 5 5 C 1.50700 * 109.46656 * 287.27486 * 4 3 2 6 6 H 1.07996 * 120.00240 * 354.63280 * 5 4 3 7 7 C 1.37885 * 119.99476 * 174.62594 * 5 4 3 8 8 N 1.31514 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99718 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47349 * 60.00196 * 9 7 5 11 11 H 1.48500 * 109.47085 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47062 * 300.00076 * 9 7 5 13 13 C 1.40145 * 110.99899 * 282.32401 * 3 2 1 14 14 C 1.39471 * 120.85245 * 116.04480 * 13 3 2 15 15 F 1.35102 * 120.49102 * 0.04741 * 14 13 3 16 16 N 1.32498 * 119.01986 * 180.02562 * 14 13 3 17 17 C 1.32050 * 120.84687 * 0.02562 * 16 14 13 18 18 F 1.35093 * 119.06350 * 180.02562 * 17 16 14 19 19 N 1.31971 * 121.87765 * 359.97438 * 17 16 14 20 20 C 1.32527 * 120.90081 * 0.02685 * 19 17 16 21 21 Cl 1.73594 * 120.47231 * 179.97438 * 20 19 17 22 22 H 1.08998 * 109.47067 * 305.24361 * 1 2 3 23 23 H 1.09001 * 109.46577 * 65.24122 * 1 2 3 24 24 H 1.09000 * 109.46843 * 185.23660 * 1 2 3 25 25 H 1.08996 * 109.47608 * 239.99258 * 2 1 3 26 26 H 1.09004 * 109.47154 * 119.99360 * 2 1 3 27 27 H 1.08997 * 109.47073 * 47.27492 * 4 3 2 28 28 H 1.08998 * 109.46798 * 167.27818 * 4 3 2 29 29 H 0.96992 * 119.99916 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3972 1.4564 0.5055 5 6 3.3979 1.2293 1.9953 6 1 2.4630 1.1362 2.5278 7 6 4.5923 1.1401 2.6784 8 7 5.7308 1.2527 2.0297 9 14 4.5933 0.8578 4.5249 10 1 3.9089 -0.4243 4.8301 11 1 5.9935 0.7999 5.0160 12 1 3.8782 1.9727 5.1964 13 6 1.9238 1.9516 -1.2782 14 6 1.0855 3.0404 -1.5169 15 9 0.3490 3.5708 -0.5162 16 7 1.0224 3.5472 -2.7395 17 6 1.7391 3.0342 -3.7229 18 9 1.6475 3.5796 -4.9554 19 7 2.5432 2.0046 -3.5357 20 6 2.6615 1.4417 -2.3418 21 17 3.7219 0.0873 -2.1083 22 1 -0.3633 0.5930 0.8393 23 1 -0.3632 0.4304 -0.9332 24 1 -0.3633 -1.0234 0.0938 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 4.0022 0.6902 0.0208 28 1 3.8135 2.4399 0.2877 29 1 6.5710 1.1903 2.5103 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591115.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:02 Heat of formation + Delta-G solvation = -15.651892 kcal Electronic energy + Delta-G solvation = -19658.787988 eV Core-core repulsion = 16087.597127 eV Total energy + Delta-G solvation = -3571.190862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.40894 -49.13707 -41.17357 -37.73197 -36.68986 -33.94980 -32.87476 -31.25791 -29.64390 -26.57874 -24.96667 -24.03653 -22.69087 -21.04841 -19.23505 -19.15690 -17.17125 -16.90948 -16.32443 -15.89541 -15.76829 -15.50354 -14.96689 -14.37731 -14.29685 -13.87658 -13.83455 -13.44263 -12.91461 -12.41002 -12.16038 -12.06077 -11.47257 -11.24253 -11.15663 -10.91448 -10.75272 -10.51580 -10.36923 -10.20758 -10.05331 -9.46813 -9.06362 -8.58967 -7.81583 -6.16592 -4.19517 0.34198 0.45456 1.31757 2.57864 3.08679 3.22626 3.26466 3.31479 3.33745 3.92155 4.24172 4.39229 4.89108 5.10352 5.19078 5.43832 5.66541 5.79998 5.93956 6.02612 6.17877 6.42258 6.52285 6.87040 7.02903 7.22918 7.53836 7.62997 7.88354 8.21696 8.86658 9.44887 10.93591 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.006341 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.206533 B = 4414.908504 C = 4725.047096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 N -0.486 5.486 4 C 0.182 3.818 5 C -0.512 4.512 6 H 0.068 0.932 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.008 3.992 14 C 0.415 3.585 15 F -0.066 7.066 16 N -0.563 5.563 17 C 0.533 3.467 18 F -0.067 7.067 19 N -0.534 5.534 20 C 0.233 3.767 21 Cl 0.037 6.963 22 H 0.067 0.933 23 H 0.036 0.964 24 H 0.057 0.943 25 H 0.038 0.962 26 H 0.103 0.897 27 H 0.030 0.970 28 H 0.026 0.974 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.428 -1.337 -8.246 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.209 5.209 4 C 0.060 3.940 5 C -0.550 4.550 6 H 0.086 0.914 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.095 4.095 14 C 0.253 3.747 15 F -0.045 7.045 16 N -0.291 5.291 17 C 0.253 3.747 18 F -0.046 7.046 19 N -0.259 5.259 20 C 0.060 3.940 21 Cl 0.066 6.934 22 H 0.086 0.914 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.121 0.879 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.504 -0.781 -8.732 11.540 hybrid contribution 0.633 -0.574 1.026 1.335 sum -6.871 -1.355 -7.706 10.413 Atomic orbital electron populations 1.21809 0.95844 1.01276 1.01479 1.22321 0.94954 0.87519 1.02954 1.60103 1.28966 1.19255 1.12537 1.20241 0.79308 0.97904 0.96523 1.20978 0.92865 1.49898 0.91281 0.91405 1.24960 0.95306 0.95153 0.98819 1.69935 0.97449 1.49699 1.36198 0.86507 0.76970 0.78907 0.84755 1.20117 1.21319 1.20057 1.20385 0.97718 0.97796 0.93613 1.17637 0.87359 0.87537 0.82132 1.91749 1.73092 1.84374 1.55263 1.66929 1.27558 1.34524 1.00106 1.17803 0.89052 0.86885 0.80946 1.91762 1.93962 1.83140 1.35770 1.67010 1.21666 1.11380 1.25831 1.22999 0.91666 0.91337 0.88011 1.98487 1.61417 1.38561 1.94917 0.91415 0.94498 0.92370 0.94369 0.87919 0.95271 0.95610 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.99 37.16 0.37 -1.72 15 2 C 0.05 0.83 5.16 -3.82 -0.02 0.81 15 3 N -0.49 -9.55 4.25 -172.08 -0.73 -10.28 15 4 C 0.18 4.29 4.05 -4.97 -0.02 4.27 15 5 C -0.51 -13.18 8.34 -34.44 -0.29 -13.47 15 6 H 0.07 1.73 7.81 -52.49 -0.41 1.32 15 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 8 N -0.89 -24.87 13.29 55.43 0.74 -24.13 15 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 15 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 13 C 0.01 0.15 4.18 -83.27 -0.35 -0.20 15 14 C 0.42 7.12 8.53 -16.80 -0.14 6.98 15 15 F -0.07 -1.13 17.17 2.25 0.04 -1.09 15 16 N -0.56 -9.27 10.45 -15.15 -0.16 -9.43 15 17 C 0.53 8.42 9.45 -91.78 -0.87 7.56 15 18 F -0.07 -0.94 17.32 2.25 0.04 -0.90 15 19 N -0.53 -8.88 10.44 -11.94 -0.12 -9.00 15 20 C 0.23 4.03 6.86 -16.93 -0.12 3.92 15 21 Cl 0.04 0.63 23.43 -51.86 -1.22 -0.59 15 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.04 0.51 7.90 -51.93 -0.41 0.10 15 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.04 0.62 5.28 -51.93 -0.27 0.34 15 26 H 0.10 1.90 7.14 -51.93 -0.37 1.53 15 27 H 0.03 0.70 5.35 -51.93 -0.28 0.42 15 28 H 0.03 0.67 7.96 -51.93 -0.41 0.26 15 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -26.42 275.26 -5.95 -32.38 By element: Atomic # 1 Polarization: -4.03 SS G_CDS: -2.14 Total: -6.17 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -1.53 Total: 9.63 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.28 Total: -52.84 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.08 Total: -1.99 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: 0.63 SS G_CDS: -1.22 Total: -0.59 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.42 -5.95 -32.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591115.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.724 kcal (2) G-P(sol) polarization free energy of solvation -26.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds