Wall clock time and date at job start Mon Mar 30 2020 01:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99423 * 2 1 4 4 H 1.48504 * 109.47018 * 269.99846 * 3 2 1 5 5 H 1.48497 * 109.47509 * 29.99984 * 3 2 1 6 6 H 1.48503 * 109.47328 * 150.00245 * 3 2 1 7 7 C 1.37868 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00117 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00002 * 0.02562 * 7 2 1 10 10 O 1.42105 * 106.40397 * 66.45887 * 9 7 2 11 11 O 1.42097 * 106.40595 * 293.54098 * 9 7 2 12 12 N 1.65602 * 107.22115 * 179.97438 * 9 7 2 13 13 C 1.39825 * 119.99576 * 65.00004 * 12 9 7 14 14 C 1.38996 * 124.95677 * 314.70102 * 13 12 9 15 15 C 1.39393 * 108.38887 * 179.83010 * 14 13 12 16 16 C 1.39722 * 125.41486 * 180.16546 * 15 14 13 17 17 C 1.38543 * 127.55477 * 180.30397 * 16 15 14 18 18 C 1.38464 * 129.20569 * 359.97438 * 17 16 15 19 19 C 1.38457 * 130.44210 * 0.02562 * 18 17 16 20 20 C 1.38545 * 129.20771 * 359.93143 * 19 18 17 21 21 C 1.39725 * 127.55402 * 0.09108 * 20 19 18 22 22 C 1.39001 * 124.95322 * 135.00131 * 13 12 9 23 23 H 0.96998 * 120.00199 * 0.02562 * 1 2 3 24 24 H 0.96991 * 120.00479 * 245.00054 * 12 9 7 25 25 H 1.07995 * 125.80382 * 359.97060 * 14 13 12 26 26 H 1.07996 * 116.22015 * 0.28014 * 16 15 14 27 27 H 1.07998 * 115.39905 * 179.97438 * 17 16 15 28 28 H 1.08002 * 114.77711 * 180.02562 * 18 17 16 29 29 H 1.07996 * 115.39516 * 180.02562 * 19 18 17 30 30 H 1.08004 * 116.22169 * 180.02562 * 20 19 18 31 31 H 1.07992 * 125.80761 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 16 1.1237 -2.7199 0.0005 10 8 0.4520 -2.7956 -1.2495 11 8 0.4511 -2.7950 1.2500 12 7 2.2485 -3.9353 0.0005 13 6 3.0989 -4.1008 1.0980 14 6 3.7748 -3.0722 1.7440 15 6 4.5175 -3.6215 2.7879 16 6 5.3282 -2.9031 3.6704 17 6 6.0876 -3.4022 4.7161 18 6 6.2340 -4.7107 5.1448 19 6 5.6748 -5.8818 4.6623 20 6 4.8013 -6.0634 3.6023 21 6 4.2735 -5.0845 2.7564 22 6 3.3964 -5.3186 1.6985 23 1 -0.4850 0.8400 -0.0004 24 1 2.3175 -4.5324 -0.7607 25 1 3.7301 -2.0252 1.4831 26 1 5.3676 -1.8344 3.5197 27 1 6.6447 -2.6661 5.2767 28 1 6.8906 -4.8384 5.9927 29 1 5.9587 -6.7815 5.1878 30 1 4.4934 -7.0799 3.4064 31 1 3.0125 -6.2820 1.3975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:44 Heat of formation + Delta-G solvation = -8.583270 kcal Electronic energy + Delta-G solvation = -18610.430288 eV Core-core repulsion = 15563.526430 eV Total energy + Delta-G solvation = -3046.903858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.71384 -36.42805 -35.22898 -34.01696 -33.49076 -33.09488 -32.99881 -28.70369 -28.05427 -26.18275 -23.79974 -22.91655 -19.60867 -18.94799 -18.42846 -17.69121 -17.23034 -16.24651 -16.10237 -15.18610 -14.89282 -14.33588 -14.04189 -13.63218 -13.17212 -13.12461 -12.89070 -12.21349 -12.02181 -11.96255 -11.57315 -11.32529 -11.22786 -11.08902 -10.79084 -10.59047 -10.50365 -10.34429 -10.23514 -10.15248 -9.69248 -9.26161 -8.77940 -7.19536 -6.98419 -6.71992 -5.34331 -0.01727 0.49295 2.20864 3.05997 3.09846 3.13386 3.18571 3.67951 3.76256 4.03818 4.60444 4.63281 4.65404 4.77236 4.95659 4.97994 5.21695 5.22344 5.56749 5.71788 5.82644 5.98642 6.00408 6.05768 6.32274 6.47326 6.52695 6.55757 6.69184 6.81591 6.99463 7.14972 7.24356 7.39081 7.92049 7.94237 8.85743 10.22324 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.006056 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.412524 B = 4622.130676 C = 5610.477000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.261 1.261 7 C -1.015 5.015 8 H 0.108 0.892 9 S 2.704 3.296 10 O -1.000 7.000 11 O -0.992 6.992 12 N -1.066 6.066 13 C 0.209 3.791 14 C -0.214 4.214 15 C -0.058 4.058 16 C -0.011 4.011 17 C -0.150 4.150 18 C -0.056 4.056 19 C -0.151 4.151 20 C -0.018 4.018 21 C -0.060 4.060 22 C -0.222 4.222 23 H 0.291 0.709 24 H 0.411 0.589 25 H 0.158 0.842 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.168 -7.722 8.044 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.185 1.185 7 C -1.149 5.149 8 H 0.126 0.874 9 S 2.805 3.195 10 O -0.991 6.991 11 O -0.982 6.982 12 N -0.808 5.808 13 C 0.111 3.889 14 C -0.235 4.235 15 C -0.059 4.059 16 C -0.029 4.029 17 C -0.168 4.168 18 C -0.075 4.075 19 C -0.169 4.169 20 C -0.037 4.037 21 C -0.060 4.060 22 C -0.244 4.244 23 H 0.102 0.898 24 H 0.245 0.755 25 H 0.175 0.825 26 H 0.143 0.857 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.946 -7.663 8.116 16.349 hybrid contribution 0.857 0.903 -0.409 1.310 sum 12.803 -6.760 7.707 16.402 Atomic orbital electron populations 1.69895 1.06811 1.30820 1.39840 1.24745 0.94471 1.00789 0.88467 0.86146 0.80145 0.79970 0.79214 1.19174 1.19967 1.18538 1.30527 1.06085 1.11256 1.67023 0.87362 1.00913 0.72096 0.73459 0.73026 1.93391 1.72669 1.87446 1.45555 1.93393 1.72227 1.87094 1.45494 1.53927 1.51852 1.51084 1.23902 1.17845 0.89430 0.94296 0.87356 1.22090 1.01137 1.00386 0.99861 1.19266 0.98101 0.92299 0.96240 1.21281 0.90666 1.00216 0.90778 1.20928 1.01391 0.95864 0.98583 1.21068 0.96576 0.91875 0.97962 1.20887 0.99803 0.97823 0.98406 1.21159 0.92177 0.98592 0.91777 1.19251 0.98410 0.91968 0.96415 1.21375 1.05896 0.97629 0.99477 0.89807 0.75526 0.82459 0.85663 0.86456 0.87041 0.86625 0.86171 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.74 13.19 55.43 0.73 -24.01 16 2 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 3 Si 0.92 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -1.02 -27.68 8.36 30.60 0.26 -27.42 16 8 H 0.11 2.67 6.23 -52.49 -0.33 2.34 16 9 S 2.70 73.58 4.87 -107.50 -0.52 73.05 16 10 O -1.00 -29.57 18.02 -57.17 -1.03 -30.60 16 11 O -0.99 -30.02 17.74 -57.17 -1.01 -31.04 16 12 N -1.07 -22.86 5.90 32.48 0.19 -22.67 16 13 C 0.21 4.29 6.33 -83.65 -0.53 3.76 16 14 C -0.21 -4.31 9.91 -38.87 -0.39 -4.69 16 15 C -0.06 -1.00 6.12 -104.75 -0.64 -1.64 16 16 C -0.01 -0.15 9.60 -38.91 -0.37 -0.52 16 17 C -0.15 -1.61 9.63 -39.39 -0.38 -1.99 16 18 C -0.06 -0.55 9.59 -39.42 -0.38 -0.92 16 19 C -0.15 -1.52 9.63 -39.39 -0.38 -1.90 16 20 C -0.02 -0.22 9.60 -38.91 -0.37 -0.60 16 21 C -0.06 -0.96 6.12 -104.75 -0.64 -1.60 16 22 C -0.22 -3.88 10.74 -38.87 -0.42 -4.30 16 23 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 24 H 0.41 7.40 8.95 -34.47 -0.31 7.09 16 25 H 0.16 3.27 5.45 -52.49 -0.29 2.98 16 26 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -36.08 288.95 -9.24 -45.32 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -2.59 Total: 8.56 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: -4.34 Total: -38.24 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.92 Total: -46.68 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: -2.04 Total: -61.64 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 73.58 SS G_CDS: -0.52 Total: 73.05 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -36.08 -9.24 -45.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.737 kcal (2) G-P(sol) polarization free energy of solvation -36.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds