Wall clock time and date at job start Mon Mar 30 2020 01:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99423 * 2 1 4 4 H 1.48504 * 109.47018 * 269.99846 * 3 2 1 5 5 H 1.48497 * 109.47509 * 29.99984 * 3 2 1 6 6 H 1.48503 * 109.47328 * 150.00245 * 3 2 1 7 7 C 1.37868 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00117 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00002 * 0.02562 * 7 2 1 10 10 O 1.42105 * 106.40397 * 66.45887 * 9 7 2 11 11 O 1.42097 * 106.40595 * 293.54098 * 9 7 2 12 12 N 1.65602 * 107.22115 * 179.97438 * 9 7 2 13 13 C 1.39825 * 119.99576 * 65.00004 * 12 9 7 14 14 C 1.38996 * 124.95677 * 314.70102 * 13 12 9 15 15 C 1.39393 * 108.38887 * 179.83010 * 14 13 12 16 16 C 1.39722 * 125.41486 * 180.16546 * 15 14 13 17 17 C 1.38543 * 127.55477 * 180.30397 * 16 15 14 18 18 C 1.38464 * 129.20569 * 359.97438 * 17 16 15 19 19 C 1.38457 * 130.44210 * 0.02562 * 18 17 16 20 20 C 1.38545 * 129.20771 * 359.93143 * 19 18 17 21 21 C 1.39725 * 127.55402 * 0.09108 * 20 19 18 22 22 C 1.39001 * 124.95322 * 135.00131 * 13 12 9 23 23 H 0.96998 * 120.00199 * 0.02562 * 1 2 3 24 24 H 0.96991 * 120.00479 * 245.00054 * 12 9 7 25 25 H 1.07995 * 125.80382 * 359.97060 * 14 13 12 26 26 H 1.07996 * 116.22015 * 0.28014 * 16 15 14 27 27 H 1.07998 * 115.39905 * 179.97438 * 17 16 15 28 28 H 1.08002 * 114.77711 * 180.02562 * 18 17 16 29 29 H 1.07996 * 115.39516 * 180.02562 * 19 18 17 30 30 H 1.08004 * 116.22169 * 180.02562 * 20 19 18 31 31 H 1.07992 * 125.80761 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 16 1.1237 -2.7199 0.0005 10 8 0.4520 -2.7956 -1.2495 11 8 0.4511 -2.7950 1.2500 12 7 2.2485 -3.9353 0.0005 13 6 3.0989 -4.1008 1.0980 14 6 3.7748 -3.0722 1.7440 15 6 4.5175 -3.6215 2.7879 16 6 5.3282 -2.9031 3.6704 17 6 6.0876 -3.4022 4.7161 18 6 6.2340 -4.7107 5.1448 19 6 5.6748 -5.8818 4.6623 20 6 4.8013 -6.0634 3.6023 21 6 4.2735 -5.0845 2.7564 22 6 3.3964 -5.3186 1.6985 23 1 -0.4850 0.8400 -0.0004 24 1 2.3175 -4.5324 -0.7607 25 1 3.7301 -2.0252 1.4831 26 1 5.3676 -1.8344 3.5197 27 1 6.6447 -2.6661 5.2767 28 1 6.8906 -4.8384 5.9927 29 1 5.9587 -6.7815 5.1878 30 1 4.4934 -7.0799 3.4064 31 1 3.0125 -6.2820 1.3975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:43 Heat of formation + Delta-G solvation = -36.173988 kcal Electronic energy + Delta-G solvation = -18611.626712 eV Core-core repulsion = 15563.526430 eV Total energy + Delta-G solvation = -3048.100282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86974 -37.63962 -37.34182 -36.25840 -35.29795 -34.73222 -34.07589 -29.85630 -29.23112 -28.24120 -24.95356 -24.00926 -21.29959 -20.62139 -19.68951 -19.23570 -18.76499 -18.03305 -17.22276 -16.92369 -16.49671 -15.98896 -15.56552 -15.27762 -14.47740 -14.34582 -14.03064 -13.95685 -13.59702 -13.14812 -13.02759 -13.00495 -12.77888 -12.61640 -12.52729 -12.32992 -12.24309 -12.10490 -11.80745 -11.27408 -11.24475 -11.14616 -10.78696 -8.80072 -8.48371 -8.14077 -7.50863 -1.07605 -0.49395 0.20856 1.31952 1.33868 1.50033 1.97118 2.19543 2.55514 2.61106 2.62020 2.84060 3.60858 3.64059 4.02882 4.05399 4.12520 4.17401 4.20725 4.42115 4.51666 4.59949 4.72796 4.84837 5.08630 5.17940 5.25138 5.52107 5.57806 5.63748 5.68169 5.71125 5.85045 6.00836 6.07313 6.45302 6.73831 8.19575 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.006056 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.412524 B = 4622.130676 C = 5610.477000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.994 3.006 4 H -0.254 1.254 5 H -0.261 1.261 6 H -0.245 1.245 7 C -1.027 5.027 8 H 0.124 0.876 9 S 2.711 3.289 10 O -1.039 7.039 11 O -1.036 7.036 12 N -1.055 6.055 13 C 0.150 3.850 14 C -0.265 4.265 15 C -0.081 4.081 16 C -0.014 4.014 17 C -0.142 4.142 18 C -0.034 4.034 19 C -0.142 4.142 20 C -0.005 4.005 21 C -0.078 4.078 22 C -0.241 4.241 23 H 0.300 0.700 24 H 0.421 0.579 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.157 0.843 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.505 -8.554 11.820 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.811 3.189 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.168 1.168 7 C -1.161 5.161 8 H 0.142 0.858 9 S 2.814 3.186 10 O -1.029 7.029 11 O -1.026 7.026 12 N -0.803 5.803 13 C 0.054 3.946 14 C -0.286 4.286 15 C -0.082 4.082 16 C -0.032 4.032 17 C -0.159 4.159 18 C -0.052 4.052 19 C -0.160 4.160 20 C -0.023 4.023 21 C -0.079 4.079 22 C -0.263 4.263 23 H 0.110 0.890 24 H 0.257 0.743 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.175 0.825 28 H 0.181 0.819 29 H 0.181 0.819 30 H 0.167 0.833 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 16.287 -8.532 11.898 21.900 hybrid contribution -0.090 0.934 -1.109 1.453 sum 16.196 -7.598 10.789 20.891 Atomic orbital electron populations 1.69996 1.08865 1.32463 1.41285 1.26080 0.95421 1.05406 0.87394 0.85081 0.79201 0.74387 0.80182 1.17780 1.18458 1.16751 1.30783 1.06981 1.11561 1.66809 0.85811 1.00296 0.72490 0.74269 0.71586 1.93318 1.74607 1.88317 1.46646 1.93314 1.74286 1.87998 1.46994 1.53058 1.51725 1.50098 1.25392 1.18124 0.91829 0.96095 0.88572 1.21917 1.04623 0.99213 1.02847 1.19428 0.98952 0.93247 0.96555 1.21620 0.90019 1.00733 0.90873 1.21503 0.99705 0.97815 0.96924 1.21864 0.94607 0.90917 0.97780 1.21586 0.97429 1.00113 0.96851 1.21669 0.90858 0.99025 0.90751 1.19422 0.99174 0.92164 0.97149 1.21471 1.07292 0.97029 1.00461 0.88978 0.74343 0.85072 0.85060 0.82535 0.81926 0.81907 0.83275 0.83611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.09 13.19 21.44 0.28 -54.81 16 2 C 0.07 4.00 5.46 84.65 0.46 4.46 16 3 Si 0.99 42.23 29.54 68.60 2.03 44.25 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.24 -9.59 7.11 99.48 0.71 -8.88 16 7 C -1.03 -59.50 8.36 67.73 0.57 -58.94 16 8 H 0.12 6.55 6.23 -2.91 -0.02 6.53 16 9 S 2.71 159.77 4.87 -56.49 -0.28 159.49 16 10 O -1.04 -66.16 18.02 -128.00 -2.31 -68.47 16 11 O -1.04 -67.91 17.74 -128.00 -2.27 -70.18 16 12 N -1.05 -49.81 5.90 -51.17 -0.30 -50.11 16 13 C 0.15 6.71 6.33 38.23 0.24 6.95 16 14 C -0.27 -11.59 9.91 22.73 0.23 -11.36 16 15 C -0.08 -2.82 6.12 -19.95 -0.12 -2.95 16 16 C -0.01 -0.36 9.60 22.70 0.22 -0.14 16 17 C -0.14 -2.24 9.63 22.40 0.22 -2.02 16 18 C -0.03 -0.39 9.59 22.38 0.21 -0.17 16 19 C -0.14 -1.83 9.63 22.40 0.22 -1.61 16 20 C 0.00 -0.10 9.60 22.70 0.22 0.12 16 21 C -0.08 -2.46 6.12 -19.95 -0.12 -2.58 16 22 C -0.24 -8.86 10.74 22.73 0.24 -8.62 16 23 H 0.30 16.48 8.31 -92.71 -0.77 15.71 16 24 H 0.42 16.93 8.95 -96.75 -0.87 16.06 16 25 H 0.13 6.07 5.45 -2.91 -0.02 6.06 16 26 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.16 0.48 8.06 -2.91 -0.02 0.45 16 29 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 30 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.15 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -88.10 288.95 0.04 -88.06 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.31 Total: 28.61 kcal Atomic # 6 Polarization: -79.43 SS G_CDS: 2.58 Total: -76.85 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -0.02 Total: -104.92 kcal Atomic # 8 Polarization: -134.07 SS G_CDS: -4.58 Total: -138.64 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 159.77 SS G_CDS: -0.28 Total: 159.49 kcal Total: -88.10 0.04 -88.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.885 kcal (2) G-P(sol) polarization free energy of solvation -88.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds