Wall clock time and date at job start Mon Mar 30 2020 01:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38180 * 120.00289 * 2 1 4 4 C 1.38371 * 120.07314 * 180.02562 * 3 2 1 5 5 F 1.35099 * 119.96395 * 180.02562 * 4 3 2 6 6 C 1.38706 * 120.07881 * 359.97438 * 4 3 2 7 7 F 1.35102 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.38282 * 120.00424 * 359.72705 * 6 4 3 9 9 C 1.38857 * 120.00256 * 180.02562 * 2 1 3 10 10 N 1.39809 * 120.03771 * 359.97438 * 9 2 1 11 11 S 1.65609 * 119.99774 * 147.69477 * 10 9 2 12 12 O 1.42107 * 106.39895 * 181.18079 * 11 10 9 13 13 O 1.42097 * 106.40087 * 314.09770 * 11 10 9 14 14 C 1.76200 * 107.21790 * 67.64033 * 11 10 9 15 15 H 1.07992 * 120.00141 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99676 * 180.02562 * 14 11 10 17 17 N 1.31523 * 120.00098 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00059 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46788 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47130 * 119.99859 * 18 16 14 21 21 H 1.48497 * 109.46938 * 239.99740 * 18 16 14 22 22 H 1.09011 * 109.46994 * 269.97774 * 1 2 3 23 23 H 1.08991 * 109.47119 * 29.97723 * 1 2 3 24 24 H 1.09000 * 109.47549 * 149.98355 * 1 2 3 25 25 H 1.07998 * 119.96323 * 0.03720 * 3 2 1 26 26 H 1.08006 * 120.03637 * 180.27270 * 8 6 4 27 27 H 0.97003 * 120.00522 * 327.41287 * 10 9 2 28 28 H 0.96997 * 119.99743 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1966 0.0000 4 6 3.5817 1.1983 -0.0005 5 9 4.2550 2.3696 0.0000 6 6 4.2783 -0.0011 -0.0005 7 9 5.6293 0.0024 -0.0005 8 6 3.5901 -1.2005 0.0057 9 6 2.2013 -1.2025 -0.0005 10 7 1.5031 -2.4138 -0.0005 11 16 2.1396 -3.7363 -0.7676 12 8 1.1925 -4.7844 -0.6127 13 8 2.5977 -3.2837 -2.0342 14 6 3.5725 -4.2232 0.1348 15 1 3.8713 -3.6704 1.0131 16 6 4.3129 -5.3095 -0.2809 17 7 3.9493 -5.9825 -1.3508 18 14 5.8324 -5.8253 0.6753 19 1 6.0248 -4.9112 1.8297 20 1 5.6591 -7.2155 1.1677 21 1 7.0216 -5.7590 -0.2116 22 1 -0.3633 -0.0004 1.0278 23 1 -0.3633 0.8901 -0.5134 24 1 -0.3634 -0.8898 -0.5141 25 1 1.6574 2.1316 0.0006 26 1 4.1321 -2.1347 0.0102 27 1 0.6479 -2.4807 0.4522 28 1 4.4700 -6.7469 -1.6431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978840.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:05 Heat of formation + Delta-G solvation = -161.357096 kcal Electronic energy + Delta-G solvation = -19642.882162 eV Core-core repulsion = 16035.124004 eV Total energy + Delta-G solvation = -3607.758158 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.15648 -48.23028 -39.37343 -35.51018 -34.40635 -34.22831 -33.28725 -32.33676 -28.88232 -26.54290 -26.38167 -22.99631 -21.50879 -19.29954 -18.23630 -17.85921 -17.11856 -16.87005 -16.09797 -15.94321 -15.32070 -15.06172 -14.66024 -14.26534 -14.11566 -13.81203 -13.69598 -13.50628 -13.44035 -12.33690 -12.18405 -11.95906 -11.79167 -11.55788 -11.33176 -11.04441 -10.73235 -10.65980 -10.56616 -10.45801 -10.26280 -9.39629 -9.01645 -8.66344 -7.82938 -6.88003 -5.53812 1.14777 1.23944 1.93289 2.98543 3.07758 3.14451 3.53707 3.88334 4.01936 4.30571 4.47557 4.56560 4.76072 4.95037 5.23627 5.34069 5.54574 5.57449 5.61041 5.85959 5.94351 6.07646 6.14869 6.26184 6.35986 6.64900 6.96996 7.14585 7.51021 7.73811 8.69615 10.06217 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.007872 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.968345 B = 3555.962512 C = 4654.061794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.111 4.111 3 C -0.102 4.102 4 C 0.031 3.969 5 F -0.137 7.137 6 C 0.100 3.900 7 F -0.127 7.127 8 C -0.179 4.179 9 C 0.218 3.782 10 N -1.064 6.064 11 S 2.695 3.305 12 O -0.992 6.992 13 O -0.985 6.985 14 C -1.025 5.025 15 H 0.111 0.889 16 C 0.135 3.865 17 N -0.838 5.838 18 Si 0.922 3.078 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.268 1.268 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.144 0.856 26 H 0.183 0.817 27 H 0.416 0.584 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 10.831 4.668 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.115 4.115 3 C -0.122 4.122 4 C 0.010 3.990 5 F -0.115 7.115 6 C 0.079 3.921 7 F -0.105 7.105 8 C -0.201 4.201 9 C 0.118 3.882 10 N -0.804 5.804 11 S 2.796 3.204 12 O -0.982 6.982 13 O -0.975 6.975 14 C -1.158 5.158 15 H 0.129 0.871 16 C -0.084 4.084 17 N -0.466 5.466 18 Si 0.745 3.255 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.193 1.193 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.162 0.838 26 H 0.200 0.800 27 H 0.251 0.749 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.631 10.251 3.636 11.467 hybrid contribution 1.224 -0.121 1.099 1.649 sum -2.407 10.130 4.734 11.438 Atomic orbital electron populations 1.20716 0.90006 1.03515 1.02594 1.19573 0.96775 0.90820 1.04363 1.20616 0.90930 0.98907 1.01734 1.17482 0.90462 0.80093 1.10992 1.91475 1.80325 1.45139 1.94601 1.17260 0.77408 0.92631 1.04778 1.91518 1.27942 1.97235 1.93852 1.21808 0.93766 1.00103 1.04378 1.16927 0.89807 0.85968 0.95457 1.54408 1.32332 1.23833 1.69868 1.01298 0.75226 0.70083 0.73776 1.93409 1.65129 1.52639 1.87042 1.93426 1.82334 1.80779 1.40978 1.30540 1.31932 1.25278 1.28052 0.87071 1.24754 0.97863 0.92653 0.93174 1.69884 1.38629 1.17462 1.20674 0.86087 0.80054 0.79164 0.80185 1.18297 1.19419 1.19334 0.90790 0.90936 0.90931 0.83792 0.80035 0.74936 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.46 36.01 0.34 -0.84 15 2 C -0.11 -1.57 5.90 -104.41 -0.62 -2.19 15 3 C -0.10 -1.35 9.67 -39.55 -0.38 -1.74 15 4 C 0.03 0.48 7.30 -39.36 -0.29 0.20 15 5 F -0.14 -2.10 17.18 2.25 0.04 -2.06 15 6 C 0.10 1.78 7.30 -39.39 -0.29 1.50 15 7 F -0.13 -2.33 17.18 2.25 0.04 -2.29 15 8 C -0.18 -3.43 8.90 -39.33 -0.35 -3.78 15 9 C 0.22 3.87 6.18 -83.75 -0.52 3.35 15 10 N -1.06 -19.73 5.26 32.42 0.17 -19.56 15 11 S 2.70 67.11 4.63 -107.50 -0.50 66.62 15 12 O -0.99 -27.19 18.02 -57.17 -1.03 -28.22 15 13 O -0.99 -27.37 17.43 -57.17 -1.00 -28.36 15 14 C -1.02 -26.19 7.57 30.60 0.23 -25.96 15 15 H 0.11 2.57 6.90 -52.49 -0.36 2.21 15 16 C 0.14 3.56 5.46 -17.82 -0.10 3.46 15 17 N -0.84 -23.39 13.19 55.43 0.73 -22.66 15 18 Si 0.92 19.64 29.54 -169.99 -5.02 14.62 15 19 H -0.26 -5.34 7.11 56.52 0.40 -4.93 15 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 22 H 0.07 0.64 8.14 -51.92 -0.42 0.22 15 23 H 0.07 0.62 8.08 -51.93 -0.42 0.20 15 24 H 0.07 0.81 7.13 -51.93 -0.37 0.44 15 25 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.18 3.83 4.48 -52.48 -0.23 3.60 15 27 H 0.42 6.23 7.87 -34.48 -0.27 5.96 15 28 H 0.29 7.35 8.31 -40.82 -0.34 7.01 15 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -32.38 270.46 -6.10 -38.48 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -1.64 Total: 5.37 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -1.97 Total: -26.01 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.90 Total: -42.22 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -2.03 Total: -56.58 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.08 Total: -4.35 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 67.11 SS G_CDS: -0.50 Total: 66.62 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.38 -6.10 -38.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978840.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.881 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds