Wall clock time and date at job start Mon Mar 30 2020 01:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38180 * 120.00289 * 2 1 4 4 C 1.38371 * 120.07314 * 180.02562 * 3 2 1 5 5 F 1.35099 * 119.96395 * 180.02562 * 4 3 2 6 6 C 1.38706 * 120.07881 * 359.97438 * 4 3 2 7 7 F 1.35102 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.38282 * 120.00424 * 359.72705 * 6 4 3 9 9 C 1.38857 * 120.00256 * 180.02562 * 2 1 3 10 10 N 1.39809 * 120.03771 * 359.97438 * 9 2 1 11 11 S 1.65609 * 119.99774 * 147.69477 * 10 9 2 12 12 O 1.42107 * 106.39895 * 181.18079 * 11 10 9 13 13 O 1.42097 * 106.40087 * 314.09770 * 11 10 9 14 14 C 1.76200 * 107.21790 * 67.64033 * 11 10 9 15 15 H 1.07992 * 120.00141 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99676 * 180.02562 * 14 11 10 17 17 N 1.31523 * 120.00098 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00059 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46788 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47130 * 119.99859 * 18 16 14 21 21 H 1.48497 * 109.46938 * 239.99740 * 18 16 14 22 22 H 1.09011 * 109.46994 * 269.97774 * 1 2 3 23 23 H 1.08991 * 109.47119 * 29.97723 * 1 2 3 24 24 H 1.09000 * 109.47549 * 149.98355 * 1 2 3 25 25 H 1.07998 * 119.96323 * 0.03720 * 3 2 1 26 26 H 1.08006 * 120.03637 * 180.27270 * 8 6 4 27 27 H 0.97003 * 120.00522 * 327.41287 * 10 9 2 28 28 H 0.96997 * 119.99743 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1966 0.0000 4 6 3.5817 1.1983 -0.0005 5 9 4.2550 2.3696 0.0000 6 6 4.2783 -0.0011 -0.0005 7 9 5.6293 0.0024 -0.0005 8 6 3.5901 -1.2005 0.0057 9 6 2.2013 -1.2025 -0.0005 10 7 1.5031 -2.4138 -0.0005 11 16 2.1396 -3.7363 -0.7676 12 8 1.1925 -4.7844 -0.6127 13 8 2.5977 -3.2837 -2.0342 14 6 3.5725 -4.2232 0.1348 15 1 3.8713 -3.6704 1.0131 16 6 4.3129 -5.3095 -0.2809 17 7 3.9493 -5.9825 -1.3508 18 14 5.8324 -5.8253 0.6753 19 1 6.0248 -4.9112 1.8297 20 1 5.6591 -7.2155 1.1677 21 1 7.0216 -5.7590 -0.2116 22 1 -0.3633 -0.0004 1.0278 23 1 -0.3633 0.8901 -0.5134 24 1 -0.3634 -0.8898 -0.5141 25 1 1.6574 2.1316 0.0006 26 1 4.1321 -2.1347 0.0102 27 1 0.6479 -2.4807 0.4522 28 1 4.4700 -6.7469 -1.6431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192978840.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:04 Heat of formation + Delta-G solvation = -185.470978 kcal Electronic energy + Delta-G solvation = -19643.927819 eV Core-core repulsion = 16035.124004 eV Total energy + Delta-G solvation = -3608.803815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.47034 -49.54355 -40.66192 -37.57747 -36.33175 -35.84376 -35.24688 -33.49550 -30.19490 -28.42503 -27.59524 -24.33043 -22.76820 -21.13349 -19.89647 -19.38651 -18.67281 -18.33950 -17.65410 -17.32146 -16.94851 -16.74917 -16.03302 -15.97965 -15.76018 -15.30084 -14.94833 -14.82681 -14.54286 -14.06776 -13.56650 -13.36884 -13.08408 -13.00631 -12.85288 -12.74839 -12.66129 -12.58191 -12.33853 -12.16326 -11.69910 -11.30265 -10.96083 -9.93528 -9.17429 -8.83079 -7.57431 -0.15516 -0.05828 0.10936 1.30520 1.33364 1.49914 2.14011 2.27780 2.50382 2.54857 2.87908 3.28412 3.50482 3.57277 3.78541 3.91555 4.11223 4.41853 4.57658 4.64416 4.79638 4.84110 4.89061 4.99941 5.20845 5.28191 5.34659 5.70809 5.80160 6.12708 6.70024 8.13116 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.007872 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.968345 B = 3555.962512 C = 4654.061794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.083 4.083 4 C 0.038 3.962 5 F -0.133 7.133 6 C 0.077 3.923 7 F -0.138 7.138 8 C -0.205 4.205 9 C 0.191 3.809 10 N -1.048 6.048 11 S 2.708 3.292 12 O -1.026 7.026 13 O -1.024 7.024 14 C -1.038 5.038 15 H 0.127 0.873 16 C 0.077 3.923 17 N -0.886 5.886 18 Si 0.985 3.015 19 H -0.248 1.248 20 H -0.256 1.256 21 H -0.261 1.261 22 H 0.101 0.899 23 H 0.103 0.897 24 H 0.064 0.936 25 H 0.193 0.807 26 H 0.155 0.845 27 H 0.433 0.567 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 12.960 5.983 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.102 4.102 4 C 0.016 3.984 5 F -0.112 7.112 6 C 0.056 3.944 7 F -0.116 7.116 8 C -0.227 4.227 9 C 0.092 3.908 10 N -0.795 5.795 11 S 2.810 3.190 12 O -1.016 7.016 13 O -1.014 7.014 14 C -1.171 5.171 15 H 0.145 0.855 16 C -0.137 4.137 17 N -0.517 5.517 18 Si 0.803 3.197 19 H -0.171 1.171 20 H -0.180 1.180 21 H -0.185 1.185 22 H 0.120 0.880 23 H 0.122 0.878 24 H 0.083 0.917 25 H 0.210 0.790 26 H 0.173 0.827 27 H 0.271 0.729 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.435 12.391 4.953 14.062 hybrid contribution 1.397 -0.621 0.701 1.682 sum -3.038 11.770 5.654 13.407 Atomic orbital electron populations 1.20921 0.86916 1.04729 1.04712 1.19998 0.98835 0.89415 1.01397 1.21101 0.89738 1.00367 0.98962 1.17637 0.91362 0.79275 1.10076 1.91490 1.80536 1.44678 1.94481 1.17423 0.77141 0.93329 1.06489 1.91479 1.28713 1.97318 1.94133 1.21657 0.94763 0.99674 1.06591 1.17172 0.89443 0.86588 0.97599 1.53561 1.32980 1.23012 1.69950 1.00530 0.74794 0.70299 0.73413 1.93353 1.65841 1.54904 1.87514 1.93367 1.82938 1.81589 1.43480 1.30872 1.32357 1.25412 1.28470 0.85521 1.25912 1.01192 0.92611 0.93999 1.69964 1.40534 1.18581 1.22576 0.85157 0.75970 0.79466 0.79068 1.17093 1.18018 1.18544 0.88048 0.87833 0.91704 0.79003 0.82745 0.72870 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.46 71.24 0.67 -1.27 15 2 C -0.09 -2.30 5.90 -19.73 -0.12 -2.42 15 3 C -0.08 -1.83 9.67 22.29 0.22 -1.62 15 4 C 0.04 1.09 7.30 22.41 0.16 1.25 15 5 F -0.13 -3.75 17.18 44.97 0.77 -2.98 15 6 C 0.08 2.73 7.30 22.39 0.16 2.89 15 7 F -0.14 -5.14 17.18 44.97 0.77 -4.36 15 8 C -0.20 -7.97 8.90 22.43 0.20 -7.77 15 9 C 0.19 6.59 6.18 38.17 0.24 6.82 15 10 N -1.05 -38.66 5.26 -51.34 -0.27 -38.93 15 11 S 2.71 138.53 4.63 -56.49 -0.26 138.27 15 12 O -1.03 -57.82 18.02 -128.00 -2.31 -60.13 15 13 O -1.02 -59.01 17.43 -128.00 -2.23 -61.24 15 14 C -1.04 -54.27 7.57 67.73 0.51 -53.75 15 15 H 0.13 5.98 6.90 -2.91 -0.02 5.96 15 16 C 0.08 4.14 5.46 84.65 0.46 4.60 15 17 N -0.89 -50.91 13.19 21.45 0.28 -50.63 15 18 Si 0.99 40.26 29.54 68.60 2.03 42.29 15 19 H -0.25 -9.55 7.11 99.48 0.71 -8.84 15 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 21 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 22 H 0.10 1.22 8.14 -2.38 -0.02 1.21 15 23 H 0.10 1.16 8.08 -2.39 -0.02 1.14 15 24 H 0.06 1.23 7.13 -2.39 -0.02 1.21 15 25 H 0.19 2.47 8.06 -2.91 -0.02 2.45 15 26 H 0.16 6.82 4.48 -2.91 -0.01 6.81 15 27 H 0.43 12.55 7.87 -96.74 -0.76 11.79 15 28 H 0.30 15.52 8.31 -92.71 -0.77 14.75 15 Total: -1.00 -72.95 270.46 1.77 -71.18 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.48 Total: 17.79 kcal Atomic # 6 Polarization: -53.78 SS G_CDS: 2.51 Total: -51.27 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: 0.01 Total: -89.56 kcal Atomic # 8 Polarization: -116.83 SS G_CDS: -4.54 Total: -121.37 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 1.55 Total: -7.34 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 16 Polarization: 138.53 SS G_CDS: -0.26 Total: 138.27 kcal Total: -72.95 1.77 -71.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978840.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.293 kcal (2) G-P(sol) polarization free energy of solvation -72.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds