Wall clock time and date at job start Mon Mar 30 2020 01:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86802 * 119.99650 * 2 1 4 4 H 1.48498 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46856 * 299.99749 * 3 2 1 6 6 H 1.48491 * 109.47326 * 60.00063 * 3 2 1 7 7 C 1.38621 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99831 * 179.97438 * 7 2 1 9 9 O 1.34814 * 120.00411 * 359.97438 * 7 2 1 10 10 C 1.35741 * 117.00316 * 185.05482 * 9 7 2 11 11 C 1.39468 * 120.37463 * 354.51966 * 10 9 7 12 12 C 1.38164 * 118.47138 * 180.02562 * 11 10 9 13 13 C 1.39511 * 119.13814 * 0.02562 * 12 11 10 14 14 C 1.48177 * 119.66037 * 179.97438 * 13 12 11 15 15 C 1.34705 * 122.79376 * 0.05299 * 14 13 12 16 16 S 1.75855 * 109.52946 * 179.97438 * 15 14 13 17 17 C 1.75801 * 91.16487 * 359.97438 * 16 15 14 18 18 C 1.50701 * 125.01775 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.47304 * 269.98334 * 18 17 16 20 20 C 1.32996 * 109.97289 * 0.02562 * 17 16 15 21 21 N 1.32732 * 120.67748 * 0.25342 * 13 12 11 22 22 C 1.31734 * 121.66490 * 359.47392 * 21 13 12 23 23 H 0.96998 * 120.00296 * 359.97438 * 1 2 3 24 24 H 1.08008 * 120.76861 * 0.02562 * 11 10 9 25 25 H 1.07995 * 120.42887 * 179.97438 * 12 11 10 26 26 H 1.08005 * 125.23688 * 359.95049 * 15 14 13 27 27 H 1.09007 * 109.46830 * 29.97911 * 18 17 16 28 28 H 1.08998 * 109.47740 * 149.97939 * 18 17 16 29 29 H 0.96699 * 114.00029 * 180.02562 * 19 18 17 30 30 H 1.08000 * 122.54572 * 179.97438 * 20 17 16 31 31 H 1.08000 * 119.60180 * 180.24888 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7096 1.3465 -0.0006 5 1 1.8909 2.3964 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2004 0.0001 9 8 1.3349 -2.3681 0.0016 10 6 2.0702 -3.5040 0.1086 11 6 3.4636 -3.4459 0.0969 12 6 4.1731 -4.6263 0.2078 13 6 3.4762 -5.8291 0.3265 14 6 4.2255 -7.1019 0.4456 15 6 5.5713 -7.1590 0.4462 16 16 6.0886 -8.8322 0.6052 17 6 4.4193 -9.3803 0.6647 18 6 3.9852 -10.8166 0.8042 19 8 3.8419 -11.3991 -0.4928 20 6 3.5960 -8.3403 0.5674 21 7 2.1490 -5.8455 0.3284 22 6 1.4436 -4.7373 0.2295 23 1 -0.4850 0.8400 0.0004 24 1 3.9764 -2.4999 0.0032 25 1 5.2530 -4.6180 0.2018 26 1 6.2311 -6.3081 0.3616 27 1 4.7351 -11.3695 1.3700 28 1 3.0306 -10.8585 1.3287 29 1 3.5635 -12.3250 -0.4796 30 1 2.5214 -8.4467 0.5815 31 1 0.3649 -4.7890 0.2386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205284039.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:51 Heat of formation + Delta-G solvation = -9.509051 kcal Electronic energy + Delta-G solvation = -17644.610828 eV Core-core repulsion = 14597.666825 eV Total energy + Delta-G solvation = -3046.944003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.77007 -38.22521 -37.19313 -36.22770 -32.56870 -31.72854 -30.94690 -28.77389 -26.10622 -25.68951 -23.43594 -22.63732 -21.04392 -19.13512 -18.17618 -17.68980 -17.56152 -16.60311 -16.00440 -15.10930 -14.86137 -14.60655 -14.17102 -14.06878 -13.79017 -13.35443 -13.13793 -12.55673 -12.48194 -12.22652 -12.06725 -11.84905 -11.69417 -11.39893 -11.16718 -10.74532 -10.58841 -10.24004 -9.86308 -9.20337 -9.05750 -8.84279 -8.67926 -8.43148 -7.18801 -6.66126 -4.22456 0.91285 1.70883 1.85248 2.04029 2.07182 2.98141 3.02929 3.09082 3.16845 3.79991 4.23146 4.59546 4.81374 4.86644 4.94483 4.97557 5.16872 5.21182 5.37255 5.40824 5.62637 5.81181 5.83426 6.05707 6.24501 6.40155 6.46823 6.68490 6.83393 6.94236 7.13926 7.39222 7.40146 7.76401 8.69226 8.78454 9.42215 10.50183 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.043625 B = 0.003340 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.675938 B = 8381.200761 C = 8945.045020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.159 6.159 10 C 0.108 3.892 11 C -0.201 4.201 12 C -0.098 4.098 13 C 0.057 3.943 14 C -0.018 4.018 15 C -0.217 4.217 16 S 0.094 5.906 17 C -0.201 4.201 18 C 0.152 3.848 19 O -0.566 6.566 20 C -0.080 4.080 21 N -0.431 5.431 22 C 0.035 3.965 23 H 0.274 0.726 24 H 0.138 0.862 25 H 0.120 0.880 26 H 0.165 0.835 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.379 0.621 30 H 0.148 0.852 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.399 -15.016 2.201 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.470 4.470 8 H 0.113 0.887 9 O -0.059 6.059 10 C 0.050 3.950 11 C -0.227 4.227 12 C -0.118 4.118 13 C -0.080 4.080 14 C -0.030 4.030 15 C -0.354 4.354 16 S 0.358 5.642 17 C -0.317 4.317 18 C 0.073 3.927 19 O -0.372 6.372 20 C -0.111 4.111 21 N -0.140 5.140 22 C -0.129 4.129 23 H 0.084 0.916 24 H 0.156 0.844 25 H 0.137 0.863 26 H 0.183 0.817 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.227 0.773 30 H 0.166 0.834 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.153 -15.703 2.131 18.821 hybrid contribution -0.541 1.973 0.013 2.046 sum 9.611 -13.730 2.144 16.897 Atomic orbital electron populations 1.70047 1.06069 1.28173 1.44071 1.25374 0.95928 0.99096 0.96004 0.85581 0.79164 0.79840 0.78498 1.18925 1.19887 1.19878 1.21457 0.92029 0.80588 1.52878 0.88731 1.83966 1.34318 1.11449 1.76184 1.20528 0.90994 0.89401 0.94088 1.21458 0.93893 0.98966 1.08408 1.21630 0.99704 0.92113 0.98377 1.18664 0.89194 0.90554 1.09564 1.17492 0.91359 0.92676 1.01509 1.25598 0.98116 0.99432 1.12279 1.83878 1.06889 0.99774 1.73621 1.23882 0.96084 0.98151 1.13599 1.20342 0.99594 0.87936 0.84799 1.86609 1.91749 1.30359 1.28471 1.20159 1.01586 0.90305 0.99077 1.67370 1.07114 1.29826 1.09724 1.21747 0.99711 0.85254 1.06202 0.91610 0.84397 0.86258 0.81723 0.92764 0.91628 0.77337 0.83438 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.76 13.67 55.48 0.76 -23.00 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.95 19.46 29.55 -169.99 -5.02 14.44 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.39 -10.43 9.49 30.87 0.29 -10.13 16 8 H 0.10 2.30 5.25 -52.49 -0.28 2.03 16 9 O -0.16 -4.31 9.76 0.12 0.00 -4.31 16 10 C 0.11 2.53 6.67 -38.89 -0.26 2.27 16 11 C -0.20 -4.22 9.25 -39.15 -0.36 -4.59 16 12 C -0.10 -1.81 9.50 -39.13 -0.37 -2.19 16 13 C 0.06 1.09 6.75 -82.92 -0.56 0.53 16 14 C -0.02 -0.30 5.79 -106.61 -0.62 -0.92 16 15 C -0.22 -3.10 10.50 29.48 0.31 -2.79 16 16 S 0.09 1.17 23.31 -107.50 -2.51 -1.33 16 17 C -0.20 -2.71 6.11 -36.13 -0.22 -2.93 16 18 C 0.15 1.55 7.52 36.01 0.27 1.82 16 19 O -0.57 -6.04 13.64 -35.23 -0.48 -6.52 16 20 C -0.08 -1.25 9.58 -40.95 -0.39 -1.65 16 21 N -0.43 -8.89 9.78 -9.63 -0.09 -8.98 16 22 C 0.03 0.75 11.14 -17.36 -0.19 0.56 16 23 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.14 2.79 5.75 -52.48 -0.30 2.49 16 25 H 0.12 1.80 6.59 -52.49 -0.35 1.46 16 26 H 0.17 2.01 6.78 -52.48 -0.36 1.65 16 27 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.38 1.94 9.12 45.56 0.42 2.35 16 30 H 0.15 2.33 7.89 -52.49 -0.41 1.91 16 31 H 0.15 3.06 8.06 -52.49 -0.42 2.64 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -31.21 292.86 -6.81 -38.02 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -1.68 Total: 6.25 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.20 Total: -18.99 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.66 Total: -31.98 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.48 Total: -10.83 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.33 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.21 -6.81 -38.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205284039.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.514 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds