Wall clock time and date at job start Mon Mar 30 2020 01:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86807 * 119.99690 * 2 1 4 4 H 1.48506 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47247 * 299.99770 * 3 2 1 6 6 H 1.48496 * 109.47310 * 59.99935 * 3 2 1 7 7 C 1.39892 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00190 * 197.61189 * 7 2 1 9 9 C 1.41377 * 119.99992 * 17.60726 * 7 2 1 10 10 C 1.40808 * 120.57291 * 203.56543 * 9 7 2 11 11 N 1.31495 * 120.69684 * 179.97438 * 10 9 7 12 12 C 1.32163 * 122.07755 * 359.97438 * 11 10 9 13 13 F 1.35107 * 119.45672 * 180.02562 * 12 11 10 14 14 C 1.40062 * 121.08338 * 0.02562 * 12 11 10 15 15 C 1.48364 * 120.42345 * 180.02562 * 14 12 11 16 16 C 1.39353 * 120.12758 * 244.70614 * 15 14 12 17 17 C 1.38006 * 119.88618 * 179.78570 * 16 15 14 18 18 C 1.38350 * 120.15032 * 0.49160 * 17 16 15 19 19 C 1.38283 * 120.25744 * 359.73718 * 18 17 16 20 20 C 1.38153 * 120.10754 * 0.02562 * 19 18 17 21 21 Cl 1.73609 * 120.07257 * 179.97438 * 20 19 18 22 22 C 1.39020 * 119.16047 * 0.02562 * 14 12 11 23 23 H 0.96998 * 120.00024 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.64916 * 359.70133 * 10 9 7 25 25 H 1.07997 * 120.05734 * 0.02562 * 16 15 14 26 26 H 1.07999 * 119.92169 * 180.22227 * 17 16 15 27 27 H 1.07993 * 119.87312 * 179.76530 * 18 17 16 28 28 H 1.08005 * 119.94168 * 180.02562 * 19 18 17 29 29 H 1.07996 * 120.93600 * 180.02562 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7027 1.3465 0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8838 2.3965 1.2124 7 6 2.0082 -1.2115 -0.0005 8 1 3.0503 -1.2335 0.2825 9 6 1.3511 -2.4070 -0.3714 10 6 1.8310 -3.6548 0.0704 11 7 1.2214 -4.7683 -0.2726 12 6 0.1436 -4.7714 -1.0375 13 9 -0.4408 -5.9469 -1.3571 14 6 -0.4026 -3.5763 -1.5222 15 6 -1.6134 -3.5968 -2.3793 16 6 -1.5413 -3.1648 -3.7023 17 6 -2.6696 -3.1902 -4.4964 18 6 -3.8737 -3.6338 -3.9791 19 6 -3.9532 -4.0594 -2.6658 20 6 -2.8292 -4.0431 -1.8627 21 17 -2.9303 -4.5769 -0.2138 22 6 0.2041 -2.3704 -1.1899 23 1 -0.4850 0.8400 -0.0004 24 1 2.7117 -3.6981 0.6941 25 1 -0.6031 -2.8144 -4.1065 26 1 -2.6136 -2.8590 -5.5228 27 1 -4.7547 -3.6482 -4.6035 28 1 -4.8957 -4.4051 -2.2673 29 1 -0.1931 -1.4319 -1.5475 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222445864.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:05 Heat of formation + Delta-G solvation = -20.176543 kcal Electronic energy + Delta-G solvation = -18418.396850 eV Core-core repulsion = 15245.486258 eV Total energy + Delta-G solvation = -3172.910592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.37805 -40.62977 -39.57442 -37.32922 -36.00991 -34.11893 -32.21679 -31.68745 -30.00413 -27.38389 -24.81163 -23.83330 -23.27588 -22.19404 -19.40536 -18.51477 -17.96966 -17.76900 -16.92207 -16.71757 -16.35094 -15.97056 -15.25256 -14.89629 -14.66855 -14.41558 -14.22545 -13.94349 -13.77843 -13.63024 -13.11074 -12.89021 -12.69785 -12.44769 -12.40776 -12.29290 -11.90135 -11.65800 -11.24233 -10.46980 -10.32600 -9.85100 -9.67713 -9.31071 -8.78531 -6.49707 0.04767 0.27356 0.61030 0.83369 1.24385 1.41791 1.48274 1.57993 2.17185 2.54800 2.69429 3.28167 3.46103 3.67398 3.90846 4.12384 4.25090 4.40730 4.45776 4.63278 4.67379 4.90542 4.92896 5.08117 5.13575 5.30609 5.39796 5.45799 5.58816 5.72695 5.88327 5.93224 6.35949 6.61398 6.64796 7.33455 8.15982 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.006783 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.527538 B = 4127.136200 C = 4790.827538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.252 1.252 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.460 4.460 8 H 0.097 0.903 9 C 0.035 3.965 10 C -0.005 4.005 11 N -0.505 5.505 12 C 0.151 3.849 13 F -0.144 7.144 14 C -0.092 4.092 15 C -0.046 4.046 16 C -0.109 4.109 17 C -0.108 4.108 18 C -0.102 4.102 19 C -0.116 4.116 20 C -0.042 4.042 21 Cl -0.084 7.084 22 C -0.111 4.111 23 H 0.296 0.704 24 H 0.154 0.846 25 H 0.130 0.870 26 H 0.166 0.834 27 H 0.174 0.826 28 H 0.154 0.846 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 1.254 -7.809 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.181 4.181 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.187 1.187 6 H -0.192 1.192 7 C -0.488 4.488 8 H 0.115 0.885 9 C 0.031 3.969 10 C -0.166 4.166 11 N -0.217 5.217 12 C -0.002 4.002 13 F -0.124 7.124 14 C -0.096 4.096 15 C -0.047 4.047 16 C -0.128 4.128 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.134 4.134 20 C -0.069 4.069 21 Cl -0.055 7.055 22 C -0.137 4.137 23 H 0.107 0.893 24 H 0.172 0.828 25 H 0.148 0.852 26 H 0.183 0.817 27 H 0.191 0.809 28 H 0.171 0.829 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.719 0.501 -7.366 9.983 hybrid contribution 0.059 0.871 0.409 0.964 sum -6.660 1.372 -6.957 9.728 Atomic orbital electron populations 1.69844 1.09283 1.31545 1.32596 1.26902 0.95458 1.04952 0.90763 0.85027 0.79622 0.75378 0.79035 1.17527 1.18697 1.19178 1.19927 0.98902 0.91163 1.38845 0.88492 1.18793 0.92749 0.94549 0.90828 1.22555 1.02806 0.86348 1.04900 1.66241 1.08439 1.34514 1.12553 1.17651 0.95862 0.80162 1.06540 1.91388 1.82738 1.46724 1.91586 1.19187 0.96705 0.92730 1.00982 1.18760 0.91099 1.00103 0.94739 1.21401 1.00644 0.99181 0.91526 1.21562 0.91549 0.98313 1.01124 1.21587 0.99309 0.97052 0.94000 1.21312 0.96889 1.00710 0.94496 1.21290 0.95595 1.03526 0.86462 1.98350 1.98408 1.88791 1.19965 1.21637 0.97770 0.95427 0.98818 0.89309 0.82832 0.85212 0.81663 0.80877 0.82875 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.64 10.92 21.82 0.24 -38.40 15 2 C 0.04 1.68 5.17 85.24 0.44 2.12 15 3 Si 0.99 33.95 29.59 68.60 2.03 35.98 15 4 H -0.25 -8.39 7.11 99.48 0.71 -7.68 15 5 H -0.26 -8.67 7.11 99.48 0.71 -7.96 15 6 H -0.27 -8.92 7.11 99.48 0.71 -8.22 15 7 C -0.46 -22.33 9.08 23.44 0.21 -22.12 15 8 H 0.10 4.39 7.91 -2.91 -0.02 4.37 15 9 C 0.04 1.82 5.59 -21.21 -0.12 1.70 15 10 C 0.00 -0.24 10.96 85.37 0.94 0.69 15 11 N -0.51 -26.42 10.33 -193.73 -2.00 -28.42 15 12 C 0.15 7.70 7.61 85.09 0.65 8.35 15 13 F -0.14 -7.14 16.07 44.97 0.72 -6.42 15 14 C -0.09 -4.44 4.67 -19.95 -0.09 -4.53 15 15 C -0.05 -1.85 5.02 -20.02 -0.10 -1.95 15 16 C -0.11 -3.61 9.74 22.48 0.22 -3.39 15 17 C -0.11 -2.58 10.03 22.24 0.22 -2.36 15 18 C -0.10 -2.22 10.04 22.31 0.22 -2.00 15 19 C -0.12 -3.21 9.82 22.26 0.22 -2.99 15 20 C -0.04 -1.57 6.15 22.54 0.14 -1.43 15 21 Cl -0.08 -3.36 26.80 -2.72 -0.07 -3.43 15 22 C -0.11 -5.61 8.50 23.12 0.20 -5.42 15 23 H 0.30 12.66 8.30 -92.71 -0.77 11.89 15 24 H 0.15 6.92 8.06 -2.91 -0.02 6.89 15 25 H 0.13 4.15 8.06 -2.91 -0.02 4.13 15 26 H 0.17 2.62 8.06 -2.91 -0.02 2.60 15 27 H 0.17 2.22 8.06 -2.91 -0.02 2.19 15 28 H 0.15 3.42 8.06 -2.91 -0.02 3.39 15 29 H 0.13 6.67 6.19 -2.91 -0.02 6.65 15 Total: -1.00 -61.02 280.10 5.25 -55.76 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.19 Total: 18.26 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 3.14 Total: -33.33 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -1.76 Total: -66.82 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.72 Total: -6.42 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Atomic # 17 Polarization: -3.36 SS G_CDS: -0.07 Total: -3.43 kcal Total: -61.02 5.25 -55.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222445864.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.587 kcal (2) G-P(sol) polarization free energy of solvation -61.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds