Wall clock time and date at job start Mon Mar 30 2020 01:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47069 * 2 1 4 4 Br 1.96602 * 109.47160 * 239.99895 * 2 1 3 5 5 C 1.52998 * 109.47129 * 119.99710 * 2 1 3 6 6 O 1.42901 * 109.47115 * 55.00208 * 5 2 1 7 7 C 1.42900 * 113.99673 * 179.97438 * 6 5 2 8 8 H 1.09003 * 110.64307 * 26.85915 * 7 6 5 9 9 C 1.55159 * 110.71723 * 149.99969 * 7 6 5 10 10 C 1.54917 * 101.58183 * 153.86417 * 9 7 6 11 11 N 1.47428 * 104.82938 * 322.99167 * 10 9 7 12 12 C 1.36942 * 125.64513 * 204.09414 * 11 10 9 13 13 H 1.07997 * 119.99819 * 164.85187 * 12 11 10 14 14 C 1.38813 * 119.99627 * 344.84262 * 12 11 10 15 15 N 1.31609 * 120.00471 * 350.14505 * 14 12 11 16 16 Si 1.86801 * 119.99631 * 170.14757 * 14 12 11 17 17 H 1.48500 * 109.47369 * 265.16017 * 16 14 12 18 18 H 1.48500 * 109.47267 * 145.15662 * 16 14 12 19 19 H 1.48510 * 109.47047 * 25.15693 * 16 14 12 20 20 C 1.47017 * 108.70526 * 24.35338 * 11 10 9 21 21 H 1.08994 * 109.47087 * 299.99977 * 1 2 3 22 22 H 1.08998 * 109.47033 * 60.00368 * 1 2 3 23 23 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47185 * 295.00049 * 5 2 1 25 25 H 1.09000 * 109.47054 * 175.00189 * 5 2 1 26 26 H 1.09002 * 111.00266 * 35.79295 * 9 7 6 27 27 H 1.08998 * 111.00552 * 271.93335 * 9 7 6 28 28 H 1.08996 * 110.36366 * 204.15532 * 10 9 7 29 29 H 1.08996 * 110.36491 * 81.83049 * 10 9 7 30 30 H 0.96997 * 120.00333 * 180.02562 * 15 14 12 31 31 H 1.09007 * 109.88125 * 118.12701 * 20 11 10 32 32 H 1.08996 * 109.88798 * 239.29518 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 35 2.1854 -0.9268 -1.6052 5 6 2.0400 -0.7212 1.2493 6 8 1.4702 -2.0303 1.3095 7 6 1.8846 -2.7928 2.4448 8 1 2.1548 -2.1354 3.2713 9 6 0.7727 -3.7861 2.8744 10 6 1.5994 -4.8968 3.5692 11 7 2.8354 -5.0016 2.7724 12 6 3.6426 -6.1050 2.6931 13 1 4.3809 -6.1786 1.9083 14 6 3.5120 -7.1286 3.6216 15 7 2.7558 -6.9597 4.6854 16 14 4.4098 -8.7459 3.3611 17 1 3.5036 -9.7127 2.6907 18 1 4.8339 -9.2938 4.6745 19 1 5.6056 -8.5169 2.5108 20 6 3.0610 -3.7235 2.0819 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.7516 -0.1582 2.1370 25 1 3.1263 -0.7994 1.2056 26 1 0.2429 -4.1786 2.0064 27 1 0.0803 -3.3187 3.5745 28 1 1.0557 -5.8413 3.5519 29 1 1.8324 -4.6108 4.5948 30 1 2.6649 -7.6748 5.3344 31 1 4.0009 -3.2831 2.4150 32 1 3.0857 -3.8836 1.0040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224915677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:24 Heat of formation + Delta-G solvation = -46.596023 kcal Electronic energy + Delta-G solvation = -14691.995194 eV Core-core repulsion = 12119.662667 eV Total energy + Delta-G solvation = -2572.332527 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.042 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.95059 -37.83649 -35.02296 -33.88126 -31.06075 -30.09943 -28.92799 -27.48809 -26.18324 -22.26818 -21.80141 -21.76048 -18.93617 -17.88371 -16.77686 -16.66957 -16.16533 -15.51049 -15.44341 -14.78703 -14.25249 -13.90142 -13.78834 -13.54855 -13.08517 -12.81087 -12.58948 -12.55765 -12.26339 -12.02996 -11.98302 -11.86724 -11.74282 -11.39477 -10.73701 -10.71367 -10.63871 -10.42547 -8.85298 -7.91845 -5.28844 0.85148 1.45005 1.47056 1.56280 2.45191 2.63369 3.28664 3.67248 3.71104 3.83578 3.93794 4.06174 4.20640 4.27250 4.47066 4.60572 4.65773 4.79032 4.86869 4.91663 5.01618 5.04416 5.06686 5.35783 5.40146 5.56286 5.67748 6.17950 6.32119 7.05592 7.72301 8.40000 9.20674 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.034894 B = 0.004663 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.243850 B = 6003.475353 C = 6587.915387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 H 0.145 0.855 4 Br -0.184 7.184 5 C 0.052 3.948 6 O -0.374 6.374 7 C 0.098 3.902 8 H 0.086 0.914 9 C -0.123 4.123 10 C 0.179 3.821 11 N -0.623 5.623 12 C -0.251 4.251 13 H 0.072 0.928 14 C -0.057 4.057 15 N -0.945 5.945 16 Si 0.978 3.022 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.269 1.269 20 C 0.115 3.885 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.028 0.972 29 H 0.011 0.989 30 H 0.251 0.749 31 H 0.019 0.981 32 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 18.430 -9.155 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 H 0.162 0.838 4 Br -0.106 7.106 5 C -0.025 4.025 6 O -0.292 6.292 7 C 0.039 3.961 8 H 0.104 0.896 9 C -0.162 4.162 10 C 0.054 3.946 11 N -0.350 5.350 12 C -0.380 4.380 13 H 0.090 0.910 14 C -0.251 4.251 15 N -0.593 5.593 16 Si 0.805 3.195 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.194 1.194 20 C -0.011 4.011 21 H 0.107 0.893 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.046 0.954 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.565 17.898 -9.738 20.881 hybrid contribution 0.699 -0.910 0.554 1.274 sum -3.866 16.988 -9.185 19.695 Atomic orbital electron populations 1.21906 0.90788 1.03414 1.03890 1.24768 1.00316 1.00185 0.87920 0.83766 1.97430 1.89687 1.81977 1.41470 1.22874 0.97828 0.84318 0.97490 1.87955 1.69106 1.26532 1.45646 1.22862 0.93762 0.91741 0.87685 0.89635 1.22938 0.96934 0.95833 1.00472 1.21157 0.85711 0.95283 0.92405 1.44655 1.25604 1.09965 1.54771 1.19355 1.14281 0.95595 1.08749 0.90990 1.25707 1.01338 1.02607 0.95490 1.70118 1.44251 1.33064 1.11850 0.85084 0.78235 0.79322 0.76825 1.21268 1.21583 1.19351 1.21838 0.96571 0.87028 0.95649 0.89317 0.90794 0.92486 0.89189 0.92671 0.91592 0.88560 0.95393 0.97134 0.94005 0.96262 0.95766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.05 71.98 0.65 -1.64 16 2 C -0.04 -0.65 3.72 30.59 0.11 -0.53 16 3 H 0.14 1.64 8.14 -2.38 -0.02 1.63 16 4 Br -0.18 -4.51 33.17 -20.37 -0.68 -5.19 16 5 C 0.05 1.10 5.39 71.98 0.39 1.49 16 6 O -0.37 -11.06 8.98 -148.98 -1.34 -12.40 16 7 C 0.10 3.35 3.44 31.79 0.11 3.46 16 8 H 0.09 2.58 7.82 -2.39 -0.02 2.56 16 9 C -0.12 -4.59 6.81 31.99 0.22 -4.37 16 10 C 0.18 8.94 5.36 86.86 0.47 9.40 16 11 N -0.62 -33.51 3.39 -691.96 -2.35 -35.86 16 12 C -0.25 -14.68 10.21 84.03 0.86 -13.82 16 13 H 0.07 4.12 7.85 -2.91 -0.02 4.10 16 14 C -0.06 -3.33 5.38 84.86 0.46 -2.88 16 15 N -0.95 -57.44 10.92 21.65 0.24 -57.21 16 16 Si 0.98 46.55 29.56 68.60 2.03 48.58 16 17 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 C 0.11 5.04 7.03 86.73 0.61 5.65 16 21 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.22 7.56 -2.39 -0.02 1.20 16 24 H 0.09 1.44 8.11 -2.39 -0.02 1.42 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 26 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.03 1.55 7.31 -2.39 -0.02 1.53 16 29 H 0.01 0.57 7.95 -2.39 -0.02 0.55 16 30 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.02 1.11 8.05 -2.39 -0.02 1.09 16 Total: -1.00 -67.77 283.70 2.86 -64.91 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: 1.08 Total: 0.42 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 3.87 Total: -3.25 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -2.11 Total: -93.07 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.34 Total: -12.40 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 35 Polarization: -4.51 SS G_CDS: -0.68 Total: -5.19 kcal Total: -67.77 2.86 -64.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224915677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.316 kcal (2) G-P(sol) polarization free energy of solvation -67.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds