Wall clock time and date at job start Mon Mar 30 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47217 * 2 1 4 4 Br 1.96594 * 109.47459 * 120.00170 * 2 1 3 5 5 C 1.52997 * 109.47238 * 240.00280 * 2 1 3 6 6 O 1.42900 * 109.47084 * 54.99712 * 5 2 1 7 7 C 1.42906 * 114.00000 * 180.02562 * 6 5 2 8 8 H 1.08996 * 110.88596 * 333.88539 * 7 6 5 9 9 C 1.55156 * 111.00616 * 209.99980 * 7 6 5 10 10 C 1.54322 * 102.94542 * 206.38996 * 9 7 6 11 11 N 1.47016 * 107.40169 * 22.11215 * 10 9 7 12 12 C 1.36935 * 125.64824 * 181.10494 * 11 10 9 13 13 H 1.08009 * 119.99965 * 173.88672 * 12 11 10 14 14 C 1.38807 * 120.00079 * 353.88343 * 12 11 10 15 15 N 1.31617 * 119.99906 * 6.82734 * 14 12 11 16 16 Si 1.86807 * 120.00016 * 186.82351 * 14 12 11 17 17 H 1.48501 * 109.46673 * 94.98788 * 16 14 12 18 18 H 1.48498 * 109.46962 * 214.98492 * 16 14 12 19 19 H 1.48490 * 109.47113 * 334.98916 * 16 14 12 20 20 C 1.47747 * 108.53089 * 1.18323 * 11 10 9 21 21 H 1.09005 * 109.47217 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47129 * 299.99875 * 1 2 3 23 23 H 1.09003 * 109.47540 * 59.99930 * 1 2 3 24 24 H 1.08997 * 109.47321 * 294.99714 * 5 2 1 25 25 H 1.09003 * 109.47684 * 174.99653 * 5 2 1 26 26 H 1.09000 * 110.72008 * 88.01834 * 9 7 6 27 27 H 1.09003 * 110.71860 * 324.75092 * 9 7 6 28 28 H 1.08998 * 109.88471 * 141.61061 * 10 9 7 29 29 H 1.08999 * 109.88004 * 262.62071 * 10 9 7 30 30 H 0.97003 * 119.99609 * 179.97438 * 15 14 12 31 31 H 1.09000 * 110.29824 * 216.94324 * 20 11 10 32 32 H 1.09009 * 110.43088 * 94.62767 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 35 2.1853 -0.9268 1.6051 5 6 2.0399 -0.7212 -1.2492 6 8 1.4701 -0.1187 -2.4130 7 6 1.8835 -0.7213 -3.6411 8 1 2.8591 -1.1951 -3.5324 9 6 1.8948 0.3169 -4.7940 10 6 1.6748 -0.5559 -6.0475 11 7 1.0377 -1.8054 -5.6069 12 6 0.6961 -2.8557 -6.4165 13 1 0.3216 -3.7716 -5.9836 14 6 0.8312 -2.7432 -7.7934 15 7 1.4113 -1.6823 -8.3132 16 14 0.1897 -4.0977 -8.9086 17 1 -1.1787 -3.7519 -9.3703 18 1 1.0875 -4.2386 -10.0830 19 1 0.1502 -5.3788 -8.1590 20 6 0.8270 -1.7355 -4.1462 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.7517 -1.7714 -1.2057 25 1 3.1263 -0.6442 -1.2953 26 1 2.8563 0.8278 -4.8435 27 1 1.0819 1.0335 -4.6756 28 1 1.0248 -0.0365 -6.7516 29 1 2.6326 -0.7746 -6.5196 30 1 1.5060 -1.6039 -9.2754 31 1 0.9924 -2.7129 -3.6931 32 1 -0.1785 -1.3784 -3.9234 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224915678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:26 Heat of formation + Delta-G solvation = -27.314247 kcal Electronic energy + Delta-G solvation = -14572.831583 eV Core-core repulsion = 12001.335177 eV Total energy + Delta-G solvation = -2571.496406 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.042 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.56241 -36.34405 -33.92880 -32.07292 -29.49439 -29.10377 -27.32202 -26.32354 -24.29279 -21.15275 -20.37353 -20.03951 -17.03941 -16.74115 -15.62735 -14.76361 -14.69758 -14.31929 -13.80955 -13.36252 -12.89268 -12.50353 -12.18738 -12.02110 -11.73965 -11.34496 -11.13660 -10.99290 -10.91842 -10.73467 -10.29383 -10.11560 -10.04996 -10.03888 -9.81762 -9.71983 -9.15700 -8.59252 -6.85069 -5.73984 -3.07003 1.39162 3.40002 3.45027 3.47086 3.82947 4.49462 4.51779 4.71486 4.98545 5.32794 5.34163 5.44437 5.51409 5.58358 5.62664 5.71641 5.73780 5.83278 6.08216 6.21820 6.44051 6.50283 6.65264 6.67560 7.49950 7.52992 7.60577 7.80475 8.23383 9.19513 9.79658 10.46052 11.38185 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.047528 B = 0.003660 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.980346 B = 7647.718720 C = 7927.330839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 H 0.110 0.890 4 Br -0.158 7.158 5 C 0.066 3.934 6 O -0.375 6.375 7 C 0.073 3.927 8 H 0.068 0.932 9 C -0.138 4.138 10 C 0.177 3.823 11 N -0.604 5.604 12 C -0.230 4.230 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.920 5.920 16 Si 0.912 3.088 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.281 1.281 20 C 0.120 3.880 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.085 0.915 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.253 0.747 31 H 0.037 0.963 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 4.526 19.232 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 H 0.129 0.871 4 Br -0.079 7.079 5 C -0.012 4.012 6 O -0.294 6.294 7 C 0.015 3.985 8 H 0.086 0.914 9 C -0.177 4.177 10 C 0.052 3.948 11 N -0.332 5.332 12 C -0.358 4.358 13 H 0.096 0.904 14 C -0.203 4.203 15 N -0.568 5.568 16 Si 0.742 3.258 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.206 1.206 20 C -0.007 4.007 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.104 0.896 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.956 4.322 19.554 20.121 hybrid contribution -0.209 -0.699 -0.966 1.211 sum 1.747 3.623 18.588 19.018 Atomic orbital electron populations 1.21934 0.91166 1.03682 1.03405 1.24473 0.99856 1.00667 0.88721 0.87126 1.97389 1.89926 1.80804 1.39733 1.22611 0.97223 0.96635 0.84715 1.87838 1.70417 1.57901 1.13255 1.23455 0.97400 0.95144 0.82493 0.91392 1.23006 1.01145 0.97980 0.95551 1.21175 0.97861 0.85111 0.90637 1.44416 1.71189 1.16685 1.00924 1.19065 1.36917 0.92321 0.87504 0.90375 1.24828 1.00898 0.97982 0.96566 1.69971 1.47175 1.28793 1.10829 0.86103 0.78414 0.80866 0.80426 1.21555 1.21729 1.20604 1.21938 0.96085 0.96012 0.86648 0.91459 0.91841 0.89610 0.92188 0.92514 0.91860 0.91427 0.93255 0.93711 0.93694 0.94477 0.95321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.05 37.15 0.34 -1.13 16 2 C -0.04 -0.44 3.69 -26.74 -0.10 -0.53 16 3 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 4 Br -0.16 -1.66 33.36 -68.01 -2.27 -3.93 16 5 C 0.07 0.83 5.32 37.16 0.20 1.03 16 6 O -0.38 -5.85 9.28 -35.23 -0.33 -6.17 16 7 C 0.07 1.32 3.54 -24.58 -0.09 1.23 16 8 H 0.07 1.19 7.83 -51.93 -0.41 0.78 16 9 C -0.14 -2.64 6.69 -24.90 -0.17 -2.81 16 10 C 0.18 4.32 5.37 -3.07 -0.02 4.31 16 11 N -0.60 -15.67 3.40 -169.81 -0.58 -16.25 16 12 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 13 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 14 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 15 N -0.92 -27.06 10.36 55.49 0.57 -26.49 16 16 Si 0.91 22.10 29.56 -169.99 -5.02 17.07 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 C 0.12 2.54 6.99 -2.35 -0.02 2.53 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.09 0.96 7.56 -51.93 -0.39 0.57 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.05 1.33 7.36 -51.93 -0.38 0.95 16 29 H 0.04 1.19 7.54 -51.93 -0.39 0.80 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 283.40 15.07 4.27 4.27 Total: -1.00 -29.53 283.40 -8.38 -37.90 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -4.92 Total: -4.13 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -0.10 Total: -2.28 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.00 Total: -42.74 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.33 Total: -6.17 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 35 Polarization: -1.66 SS G_CDS: -2.27 Total: -3.93 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.53 -8.38 -37.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224915678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.590 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds