Wall clock time and date at job start Mon Mar 30 2020 01:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46959 * 2 1 4 4 Br 1.96599 * 109.46855 * 119.99467 * 2 1 3 5 5 C 1.52992 * 109.47357 * 239.99567 * 2 1 3 6 6 O 1.42908 * 109.47171 * 54.99677 * 5 2 1 7 7 C 1.42900 * 113.99997 * 179.97438 * 6 5 2 8 8 C 1.53514 * 114.16934 * 150.00256 * 7 6 5 9 9 N 1.47483 * 87.92777 * 87.81254 * 8 7 6 10 10 C 1.46903 * 110.99717 * 138.70421 * 9 8 7 11 11 C 1.50694 * 109.47066 * 169.99804 * 10 9 8 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.47480 * 87.83900 * 27.00973 * 9 8 7 20 20 H 1.09001 * 109.46966 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47188 * 300.00118 * 1 2 3 22 22 H 1.08992 * 109.46961 * 60.00687 * 1 2 3 23 23 H 1.09003 * 109.47260 * 295.00342 * 5 2 1 24 24 H 1.08996 * 109.47459 * 174.99783 * 5 2 1 25 25 H 1.09004 * 113.25466 * 17.04971 * 7 6 5 26 26 H 1.09000 * 113.47331 * 333.04932 * 8 7 6 27 27 H 1.08997 * 113.47627 * 202.58057 * 8 7 6 28 28 H 1.09007 * 109.47052 * 49.99488 * 10 9 8 29 29 H 1.09003 * 109.46808 * 290.00181 * 10 9 8 30 30 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 31 31 H 1.09004 * 113.47132 * 87.75237 * 19 9 8 32 32 H 1.09000 * 113.47538 * 218.21976 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 35 2.1853 -0.9266 1.6053 5 6 2.0401 -0.7213 -1.2491 6 8 1.4702 -0.1190 -2.4130 7 6 1.8846 -0.7210 -3.6410 8 6 0.8402 -0.6423 -4.7634 9 7 1.4097 0.6682 -5.1286 10 6 1.5028 0.8136 -6.5874 11 6 1.8526 2.2391 -6.9288 12 1 1.9914 2.9646 -6.1410 13 6 1.9943 2.6174 -8.2471 14 7 1.8248 1.7340 -9.2066 15 14 2.4272 4.3846 -8.6703 16 1 2.5215 4.5316 -10.1450 17 1 1.3731 5.2910 -8.1484 18 1 3.7318 4.7358 -8.0540 19 6 2.6903 0.2073 -4.5606 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 1.7517 -1.7716 -1.2054 24 1 3.1264 -0.6444 -1.2951 25 1 2.3242 -1.7097 -3.5088 26 1 -0.1854 -0.5837 -4.3988 27 1 0.9719 -1.4028 -5.5331 28 1 0.5452 0.5560 -7.0401 29 1 2.2764 0.1479 -6.9702 30 1 1.9242 2.0003 -10.1340 31 1 3.3157 -0.3264 -5.2763 32 1 3.2327 0.9860 -4.0242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224922062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:17 Heat of formation + Delta-G solvation = -32.980193 kcal Electronic energy + Delta-G solvation = -14258.468694 eV Core-core repulsion = 11686.726594 eV Total energy + Delta-G solvation = -2571.742100 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.042 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.07301 -38.27892 -35.19543 -34.56335 -31.08314 -30.16657 -27.66247 -27.05173 -26.62081 -23.60618 -22.01948 -20.89386 -18.57800 -17.78732 -17.06014 -16.92390 -16.27367 -15.61837 -15.39503 -15.16141 -14.66859 -14.13373 -13.79116 -13.59372 -13.30472 -12.92362 -12.79871 -12.45237 -12.34232 -12.17108 -12.00581 -11.89264 -11.45119 -11.26644 -10.92934 -10.87347 -10.62453 -10.44619 -9.54480 -8.23585 -6.33829 0.51798 1.39037 1.42504 1.50801 2.38958 2.56533 3.08307 3.41171 3.44358 3.68879 3.82741 3.99698 4.15451 4.34336 4.51441 4.53871 4.59267 4.68343 4.72046 4.83999 4.87083 4.94535 5.00156 5.05445 5.27681 5.58347 5.80726 6.08631 6.24494 6.49515 6.80420 7.35785 8.87270 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.047205 B = 0.003278 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.015959 B = 8539.378676 C = 8780.605686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 H 0.112 0.888 4 Br -0.151 7.151 5 C 0.060 3.940 6 O -0.363 6.363 7 C 0.085 3.915 8 C -0.009 4.009 9 N -0.485 5.485 10 C 0.171 3.829 11 C -0.529 4.529 12 H 0.054 0.946 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.970 3.030 16 H -0.279 1.279 17 H -0.270 1.270 18 H -0.268 1.268 19 C -0.014 4.014 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.000 1.000 29 H -0.016 1.016 30 H 0.266 0.734 31 H 0.070 0.930 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 -8.454 22.195 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 H 0.130 0.870 4 Br -0.071 7.071 5 C -0.017 4.017 6 O -0.282 6.282 7 C 0.026 3.974 8 C -0.138 4.138 9 N -0.207 5.207 10 C 0.044 3.956 11 C -0.567 4.567 12 H 0.073 0.927 13 C -0.196 4.196 14 N -0.574 5.574 15 Si 0.794 3.206 16 H -0.204 1.204 17 H -0.195 1.195 18 H -0.193 1.193 19 C -0.144 4.144 20 H 0.089 0.911 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.131 0.869 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.018 0.982 29 H 0.002 0.998 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.668 -7.984 22.760 24.129 hybrid contribution 0.567 0.192 -1.499 1.614 sum 1.235 -7.792 21.260 22.677 Atomic orbital electron populations 1.21899 0.90850 1.03685 1.03413 1.24413 1.00072 1.00845 0.88253 0.87013 1.97401 1.89910 1.80498 1.39311 1.22873 0.98078 0.96939 0.83790 1.87935 1.69103 1.58328 1.12820 1.23056 0.94962 0.95836 0.83499 1.24112 1.00709 0.92609 0.96406 1.68954 1.11444 1.27113 1.13231 1.19963 0.94359 0.96217 0.85033 1.21400 1.47196 0.95976 0.92126 0.92725 1.25920 0.95138 1.02425 0.96072 1.70060 1.50857 1.36244 1.00216 0.85431 0.79071 0.79042 0.77055 1.20382 1.19492 1.19262 1.24294 0.94018 0.98567 0.97510 0.91116 0.90718 0.91048 0.90787 0.91504 0.86910 0.89656 0.90372 0.98170 0.99801 0.92532 0.91145 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.05 71.98 0.65 -1.83 16 2 C -0.04 -0.73 3.69 30.59 0.11 -0.61 16 3 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 4 Br -0.15 -2.62 33.36 -20.37 -0.68 -3.30 16 5 C 0.06 1.20 5.33 71.98 0.38 1.58 16 6 O -0.36 -10.06 9.52 -148.98 -1.42 -11.48 16 7 C 0.09 2.43 4.65 30.94 0.14 2.57 16 8 C -0.01 -0.32 7.52 83.58 0.63 0.31 16 9 N -0.48 -21.82 6.32 -932.85 -5.89 -27.71 16 10 C 0.17 9.34 4.57 85.55 0.39 9.74 16 11 C -0.53 -31.31 9.39 25.60 0.24 -31.07 16 12 H 0.05 3.24 7.81 -2.91 -0.02 3.22 16 13 C 0.00 0.15 5.46 84.66 0.46 0.61 16 14 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 15 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 C -0.01 -0.53 7.56 83.58 0.63 0.10 16 20 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.07 1.52 7.56 -2.39 -0.02 1.50 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.11 2.38 7.88 -2.38 -0.02 2.36 16 26 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.08 2.60 7.91 -2.39 -0.02 2.58 16 28 H 0.00 0.01 8.08 -2.38 -0.02 -0.01 16 29 H -0.02 -0.89 7.30 -2.39 -0.02 -0.91 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.07 2.59 7.42 -2.39 -0.02 2.57 16 32 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -65.97 289.83 -0.95 -66.92 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.08 Total: 3.41 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 3.65 Total: -18.60 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -5.61 Total: -84.18 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.42 Total: -11.48 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 35 Polarization: -2.62 SS G_CDS: -0.68 Total: -3.30 kcal Total: -65.97 -0.95 -66.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224922062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.937 kcal (2) G-P(sol) polarization free energy of solvation -65.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds