Wall clock time and date at job start Mon Mar 30 2020 01:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99747 * 2 1 4 4 H 1.48498 * 109.47208 * 239.99883 * 3 2 1 5 5 H 1.48493 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47087 * 119.99853 * 3 2 1 7 7 C 1.37874 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00033 * 0.02562 * 7 2 1 10 10 H 1.08990 * 109.47308 * 300.00092 * 9 7 2 11 11 C 1.53002 * 109.46943 * 60.00048 * 9 7 2 12 12 Cl 1.80300 * 109.46971 * 184.99905 * 11 9 7 13 13 O 1.42898 * 109.46929 * 179.97438 * 9 7 2 14 14 C 1.35738 * 116.99635 * 145.93285 * 13 9 7 15 15 C 1.39295 * 120.84689 * 176.47589 * 14 13 9 16 16 C 1.37942 * 119.09358 * 180.02562 * 15 14 13 17 17 N 1.31983 * 120.82505 * 0.02562 * 16 15 14 18 18 C 1.31946 * 121.86348 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.59008 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.47084 * 29.99813 * 19 18 17 21 21 F 1.39898 * 109.47162 * 150.00098 * 19 18 17 22 22 C 1.37993 * 120.81919 * 359.71709 * 18 17 16 23 23 H 0.96992 * 120.00450 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47055 * 305.00338 * 11 9 7 25 25 H 1.09005 * 109.47183 * 64.99738 * 11 9 7 26 26 H 1.07998 * 120.45011 * 0.02568 * 15 14 13 27 27 H 1.07997 * 119.59092 * 179.97438 * 16 15 14 28 28 H 1.08999 * 109.46783 * 269.99943 * 19 18 17 29 29 H 1.08004 * 120.45720 * 180.30604 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5568 0.8902 11 6 0.3720 -2.5805 -1.2491 12 17 -0.6385 -4.0720 -1.1769 13 8 2.1798 -3.5853 0.0005 14 6 1.8187 -4.7047 0.6780 15 6 2.6298 -5.8371 0.6701 16 6 2.2274 -6.9552 1.3707 17 7 1.0908 -6.9603 2.0415 18 6 0.2954 -5.9079 2.0721 19 6 -0.9907 -5.9698 2.8552 20 9 -0.8354 -6.8407 3.9389 21 9 -1.3120 -4.6921 3.3259 22 6 0.6297 -4.7493 1.4013 23 1 -0.4850 0.8399 0.0004 24 1 -0.2754 -1.7048 -1.2954 25 1 1.0040 -2.6124 -2.1366 26 1 3.5608 -5.8397 0.1229 27 1 2.8499 -7.8378 1.3697 28 1 -1.7916 -6.3314 2.2103 29 1 -0.0234 -3.8897 1.4344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228530569.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:17 Heat of formation + Delta-G solvation = -132.876909 kcal Electronic energy + Delta-G solvation = -19437.227067 eV Core-core repulsion = 15828.660196 eV Total energy + Delta-G solvation = -3608.566871 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.042 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.03463 -48.04965 -41.59090 -39.39456 -36.70308 -35.48335 -33.27562 -32.48037 -31.06724 -27.80089 -27.32481 -25.09262 -23.33977 -22.54219 -19.64817 -19.02941 -18.54258 -18.28275 -17.46619 -17.25095 -16.86026 -16.38470 -16.19859 -15.48695 -15.12656 -14.89476 -14.73618 -14.53323 -14.37884 -13.99068 -13.92502 -13.65647 -13.16014 -13.04210 -12.85040 -12.59495 -12.30646 -11.99011 -11.65305 -11.33527 -11.16250 -10.73196 -10.59093 -10.21043 -9.61074 -8.41299 -6.57942 -0.08677 0.34012 1.38509 1.42965 1.51937 1.54885 2.17996 2.41992 2.50432 2.69936 2.93845 3.08164 3.33040 3.80086 3.89831 3.99414 4.16283 4.28153 4.29473 4.44538 4.51587 4.66922 4.86119 5.08820 5.21967 5.47548 5.55500 5.76036 6.33609 6.64000 6.83397 7.14450 8.65141 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.006020 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.590032 B = 4650.126708 C = 4838.247007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.552 4.552 8 H 0.069 0.931 9 C 0.209 3.791 10 H 0.033 0.967 11 C -0.026 4.026 12 Cl -0.223 7.223 13 O -0.314 6.314 14 C 0.167 3.833 15 C -0.201 4.201 16 C 0.136 3.864 17 N -0.502 5.502 18 C 0.068 3.932 19 C 0.327 3.673 20 F -0.195 7.195 21 F -0.204 7.204 22 C -0.224 4.224 23 H 0.277 0.723 24 H 0.120 0.880 25 H 0.080 0.920 26 H 0.165 0.835 27 H 0.208 0.792 28 H 0.161 0.839 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -9.303 0.461 9.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.173 4.173 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.088 0.912 9 C 0.154 3.846 10 H 0.050 0.950 11 C -0.089 4.089 12 Cl -0.197 7.197 13 O -0.225 6.225 14 C 0.112 3.888 15 C -0.221 4.221 16 C -0.021 4.021 17 N -0.216 5.216 18 C -0.069 4.069 19 C 0.273 3.727 20 F -0.176 7.176 21 F -0.186 7.186 22 C -0.245 4.245 23 H 0.087 0.913 24 H 0.138 0.862 25 H 0.099 0.901 26 H 0.182 0.818 27 H 0.224 0.776 28 H 0.178 0.822 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.205 -9.921 0.819 9.956 hybrid contribution 0.194 1.908 -0.357 1.951 sum 0.400 -8.012 0.461 8.036 Atomic orbital electron populations 1.69859 1.07055 1.29242 1.48169 1.25703 0.95933 1.02606 0.93012 0.85297 0.78231 0.77198 0.79222 1.18982 1.20139 1.19667 1.21189 0.94262 0.89100 1.54411 0.91233 1.20412 0.87360 0.82890 0.93979 0.94952 1.25434 0.95143 0.87069 1.01230 1.98634 1.75258 1.46770 1.99019 1.86099 1.46766 1.22331 1.67269 1.19753 0.92302 0.88039 0.88712 1.21912 1.02866 0.91680 1.05652 1.23137 0.91504 0.97777 0.89634 1.67351 1.05884 1.27770 1.20609 1.21445 0.96925 0.90654 0.97840 1.20351 0.95504 0.73454 0.83439 1.92984 1.96945 1.69319 1.58353 1.93009 1.93599 1.41861 1.90104 1.21968 0.99607 1.00496 1.02426 0.91327 0.86243 0.90113 0.81766 0.77556 0.82216 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.17 11.29 21.45 0.24 -45.93 15 2 C 0.03 1.46 5.29 84.65 0.45 1.90 15 3 Si 0.98 39.43 29.54 68.60 2.03 41.46 15 4 H -0.27 -10.36 7.11 99.48 0.71 -9.66 15 5 H -0.28 -10.82 7.11 99.48 0.71 -10.12 15 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 7 C -0.55 -28.16 8.89 25.60 0.23 -27.93 15 8 H 0.07 3.56 7.81 -2.91 -0.02 3.53 15 9 C 0.21 9.90 2.19 29.85 0.07 9.96 15 10 H 0.03 1.68 5.40 -2.39 -0.01 1.67 15 11 C -0.03 -1.14 6.17 71.98 0.44 -0.69 15 12 Cl -0.22 -8.63 25.85 -2.72 -0.07 -8.71 15 13 O -0.31 -13.81 9.74 -90.62 -0.88 -14.69 15 14 C 0.17 6.38 6.00 22.77 0.14 6.52 15 15 C -0.20 -6.01 10.08 22.45 0.23 -5.78 15 16 C 0.14 3.56 11.17 84.60 0.95 4.50 15 17 N -0.50 -15.73 9.96 -184.13 -1.83 -17.56 15 18 C 0.07 2.31 6.58 42.48 0.28 2.59 15 19 C 0.33 9.61 5.72 71.24 0.41 10.02 15 20 F -0.19 -5.95 17.06 44.97 0.77 -5.18 15 21 F -0.20 -6.87 16.45 44.97 0.74 -6.13 15 22 C -0.22 -8.52 6.56 22.45 0.15 -8.37 15 23 H 0.28 13.35 8.31 -92.71 -0.77 12.58 15 24 H 0.12 5.69 5.95 -2.39 -0.01 5.68 15 25 H 0.08 3.42 8.14 -2.38 -0.02 3.40 15 26 H 0.16 4.04 8.06 -2.91 -0.02 4.01 15 27 H 0.21 3.41 8.06 -2.91 -0.02 3.38 15 28 H 0.16 3.51 8.14 -2.39 -0.02 3.50 15 29 H 0.13 5.66 4.87 -2.91 -0.01 5.65 15 Total: -1.00 -56.11 274.60 5.52 -50.60 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.20 Total: 13.43 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 3.33 Total: -7.28 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -1.59 Total: -63.50 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.88 Total: -14.69 kcal Atomic # 9 Polarization: -12.82 SS G_CDS: 1.51 Total: -11.31 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Atomic # 17 Polarization: -8.63 SS G_CDS: -0.07 Total: -8.71 kcal Total: -56.11 5.52 -50.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228530569.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.280 kcal (2) G-P(sol) polarization free energy of solvation -56.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds