Wall clock time and date at job start Mon Mar 30 2020 01:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86801 * 120.00635 * 2 1 4 4 H 1.48492 * 109.47461 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46837 * 300.00254 * 3 2 1 6 6 H 1.48496 * 109.47076 * 59.99680 * 3 2 1 7 7 C 1.39904 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00225 * 163.15096 * 7 2 1 9 9 C 1.41376 * 119.99613 * 343.14640 * 7 2 1 10 10 C 1.40803 * 120.57249 * 155.72872 * 9 7 2 11 11 N 1.31494 * 120.70167 * 180.02562 * 10 9 7 12 12 C 1.32165 * 122.07468 * 359.97438 * 11 10 9 13 13 F 1.35107 * 119.45694 * 179.97438 * 12 11 10 14 14 C 1.40064 * 121.08277 * 359.97438 * 12 11 10 15 15 C 1.48377 * 120.41890 * 179.97438 * 14 12 11 16 16 C 1.39351 * 120.10821 * 309.99987 * 15 14 12 17 17 C 1.37992 * 119.89061 * 179.97438 * 16 15 14 18 18 C 1.38443 * 120.10538 * 0.02562 * 17 16 15 19 19 Cl 1.73609 * 119.88808 * 179.69912 * 18 17 16 20 20 C 1.38433 * 120.22193 * 359.97438 * 18 17 16 21 21 C 1.37998 * 120.10922 * 0.02562 * 20 18 17 22 22 C 1.39008 * 119.15974 * 0.27207 * 14 12 11 23 23 H 0.97004 * 119.99155 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.64627 * 359.97438 * 10 9 7 25 25 H 1.08000 * 120.05375 * 359.95982 * 16 15 14 26 26 H 1.07999 * 119.94557 * 180.02562 * 17 16 15 27 27 H 1.07998 * 119.95168 * 179.97438 * 20 18 17 28 28 H 1.07997 * 120.05800 * 180.02562 * 21 20 18 29 29 H 1.07997 * 120.93335 * 179.74714 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7027 1.3462 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8841 2.3964 1.2124 7 6 2.0081 -1.2116 -0.0005 8 1 3.0532 -1.2317 -0.2716 9 6 1.3466 -2.4098 0.3539 10 6 1.8229 -3.6532 -0.1039 11 7 1.2094 -4.7691 0.2238 12 6 0.1314 -4.7789 0.9883 13 9 -0.4573 -5.9565 1.2918 14 6 -0.4108 -3.5885 1.4891 15 6 -1.6220 -3.6166 2.3458 16 6 -2.7489 -4.3288 1.9400 17 6 -3.8727 -4.3523 2.7404 18 6 -3.8819 -3.6694 3.9446 19 17 -5.3016 -3.6963 4.9435 20 6 -2.7650 -2.9603 4.3521 21 6 -1.6363 -2.9307 3.5587 22 6 0.1966 -2.3800 1.1684 23 1 -0.4849 0.8401 0.0004 24 1 2.7010 -3.6907 -0.7316 25 1 -2.7427 -4.8614 1.0004 26 1 -4.7463 -4.9044 2.4269 27 1 -2.7771 -2.4288 5.2922 28 1 -0.7652 -2.3777 3.8777 29 1 -0.1997 -1.4448 1.5355 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236095430.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:07 Heat of formation + Delta-G solvation = -11.233289 kcal Electronic energy + Delta-G solvation = -18006.200626 eV Core-core repulsion = 14833.677843 eV Total energy + Delta-G solvation = -3172.522783 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.65045 -39.20166 -38.06995 -36.30792 -34.27118 -32.42077 -30.86677 -30.42270 -28.37235 -25.62394 -23.23839 -22.65868 -21.63274 -20.64863 -17.74249 -16.88321 -16.60769 -16.06185 -15.48876 -15.06968 -14.90543 -14.47840 -13.84118 -13.32506 -13.28600 -13.24291 -12.60301 -12.37815 -12.16250 -11.88819 -11.64707 -11.43962 -11.37762 -11.24434 -11.20087 -10.76976 -10.62869 -10.18209 -9.58021 -8.96582 -8.80794 -8.52192 -8.09374 -7.57616 -7.09812 -4.71021 1.23512 1.56144 2.26401 2.29407 2.59677 2.91244 2.94233 2.97361 3.68719 3.92001 4.28948 4.96543 5.04947 5.08595 5.20478 5.28233 5.60540 5.65544 5.87007 6.05399 6.17976 6.38960 6.43524 6.44762 6.56681 6.81809 6.84084 6.94337 7.04271 7.35861 7.53064 7.67340 8.12637 8.38200 8.40240 9.13232 9.81656 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.018327 B = 0.005391 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.432405 B = 5192.352340 C = 6460.017882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.054 3.946 10 C 0.012 3.988 11 N -0.488 5.488 12 C 0.164 3.836 13 F -0.145 7.145 14 C -0.107 4.107 15 C -0.004 4.004 16 C -0.092 4.092 17 C -0.110 4.110 18 C -0.045 4.045 19 Cl -0.087 7.087 20 C -0.111 4.111 21 C -0.096 4.096 22 C -0.095 4.095 23 H 0.287 0.713 24 H 0.140 0.860 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 -0.086 5.710 7.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.108 0.892 9 C 0.049 3.951 10 C -0.149 4.149 11 N -0.200 5.200 12 C 0.010 3.990 13 F -0.125 7.125 14 C -0.111 4.111 15 C -0.005 4.005 16 C -0.110 4.110 17 C -0.129 4.129 18 C -0.072 4.072 19 Cl -0.058 7.058 20 C -0.130 4.130 21 C -0.114 4.114 22 C -0.120 4.120 23 H 0.099 0.901 24 H 0.157 0.843 25 H 0.149 0.851 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.331 -0.765 5.500 7.698 hybrid contribution -0.292 1.335 0.325 1.405 sum -5.623 0.571 5.825 8.116 Atomic orbital electron populations 1.69778 1.07760 1.30142 1.32939 1.26040 0.94873 1.01951 0.91935 0.86115 0.80973 0.80065 0.78915 1.18033 1.19657 1.19403 1.19616 0.98129 0.90431 1.38497 0.89244 1.18502 0.92235 0.93898 0.90459 1.22326 1.02015 0.86551 1.04028 1.66285 1.07600 1.33753 1.12346 1.17499 0.95850 0.79650 1.06019 1.91408 1.82461 1.46587 1.91997 1.19122 0.96513 0.93709 1.01754 1.18896 0.93089 0.95073 0.93445 1.21217 0.91698 0.98414 0.99674 1.20897 0.99092 0.99852 0.93054 1.20866 0.88871 1.03380 0.94034 1.98335 1.40124 1.97774 1.69579 1.20898 0.91932 0.99624 1.00524 1.21217 0.97854 0.98893 0.93461 1.21744 0.97005 0.95405 0.97855 0.90137 0.84311 0.85108 0.85238 0.85233 0.84942 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.02 10.91 55.55 0.61 -17.41 15 2 C 0.07 1.59 5.19 -17.34 -0.09 1.50 15 3 Si 0.92 16.56 29.59 -169.99 -5.03 11.53 15 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 6 H -0.27 -4.82 7.11 56.52 0.40 -4.42 15 7 C -0.44 -10.19 9.08 -37.77 -0.34 -10.53 15 8 H 0.09 1.96 7.90 -52.49 -0.41 1.55 15 9 C 0.05 1.29 5.59 -106.71 -0.60 0.70 15 10 C 0.01 0.29 10.96 -16.73 -0.18 0.10 15 11 N -0.49 -11.88 10.33 -12.58 -0.13 -12.01 15 12 C 0.16 3.86 8.30 -16.72 -0.14 3.73 15 13 F -0.14 -3.26 15.91 2.25 0.04 -3.23 15 14 C -0.11 -2.39 5.48 -104.75 -0.57 -2.97 15 15 C 0.00 -0.08 5.32 -104.90 -0.56 -0.64 15 16 C -0.09 -1.60 8.87 -39.26 -0.35 -1.95 15 17 C -0.11 -1.66 9.81 -39.60 -0.39 -2.05 15 18 C -0.05 -0.67 6.32 -39.43 -0.25 -0.92 15 19 Cl -0.09 -1.11 28.95 -51.86 -1.50 -2.62 15 20 C -0.11 -1.65 9.81 -39.60 -0.39 -2.04 15 21 C -0.10 -1.62 9.53 -39.26 -0.37 -2.00 15 22 C -0.09 -2.23 8.29 -38.27 -0.32 -2.54 15 23 H 0.29 6.00 8.30 -40.82 -0.34 5.66 15 24 H 0.14 2.92 8.06 -52.48 -0.42 2.50 15 25 H 0.13 2.26 7.80 -52.49 -0.41 1.85 15 26 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 27 H 0.13 1.60 8.06 -52.49 -0.42 1.18 15 28 H 0.13 2.12 8.05 -52.49 -0.42 1.70 15 29 H 0.14 3.31 6.20 -52.49 -0.33 2.98 15 LS Contribution 281.99 15.07 4.25 4.25 Total: -1.00 -25.26 281.99 -8.29 -33.55 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -1.97 Total: 5.53 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -4.55 Total: -19.60 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.48 Total: -29.42 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.53 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -25.26 -8.29 -33.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236095430.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.319 kcal (2) G-P(sol) polarization free energy of solvation -25.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds