Wall clock time and date at job start Mon Mar 30 2020 01:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86803 * 119.99549 * 2 1 4 4 H 1.48503 * 109.47029 * 240.00194 * 3 2 1 5 5 H 1.48497 * 109.47237 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46863 * 120.00279 * 3 2 1 7 7 C 1.40010 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00196 * 197.62785 * 7 2 1 9 9 C 1.41050 * 119.99860 * 17.62987 * 7 2 1 10 10 C 1.41308 * 120.55182 * 23.70655 * 9 7 2 11 11 C 1.36582 * 118.41505 * 180.25581 * 10 9 7 12 12 C 1.39936 * 119.46825 * 359.48014 * 11 10 9 13 13 C 1.47895 * 119.45581 * 180.25676 * 12 11 10 14 14 C 1.39650 * 120.15305 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.89743 * 179.72255 * 14 13 12 16 16 C 1.38442 * 120.22119 * 0.57189 * 15 14 13 17 17 C 1.38389 * 120.31259 * 359.68454 * 16 15 14 18 18 Cl 1.73602 * 119.95144 * 180.02562 * 17 16 15 19 19 C 1.38351 * 120.09569 * 0.03716 * 17 16 15 20 20 F 1.35092 * 120.10953 * 180.02562 * 19 17 16 21 21 N 1.33043 * 121.08842 * 0.53617 * 12 11 10 22 22 C 1.31264 * 121.72363 * 359.72169 * 21 12 11 23 23 H 0.96997 * 120.00621 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.79264 * 359.97438 * 10 9 7 25 25 H 1.07999 * 120.26579 * 179.70260 * 11 10 9 26 26 H 1.08004 * 120.05220 * 359.97438 * 14 13 12 27 27 H 1.08008 * 119.88693 * 180.25363 * 15 14 13 28 28 H 1.08004 * 119.84729 * 179.70018 * 16 15 14 29 29 H 1.07996 * 119.79771 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0956 1.6966 -1.2126 5 1 1.2768 2.7465 0.0006 6 1 3.0956 1.6965 1.2124 7 6 2.0081 -1.2125 -0.0005 8 1 3.0501 -1.2346 0.2827 9 6 1.3526 -2.4052 -0.3710 10 6 0.2048 -2.3680 -1.1944 11 6 -0.3986 -3.5487 -1.5220 12 6 0.1376 -4.7508 -1.0471 13 6 -0.5126 -6.0296 -1.4067 14 6 -1.6526 -6.0343 -2.2133 15 6 -2.2513 -7.2299 -2.5500 16 6 -1.7330 -8.4251 -2.0815 17 6 -0.6068 -8.4304 -1.2772 18 17 0.0356 -9.9346 -0.6954 19 6 0.0077 -7.2388 -0.9360 20 9 1.1074 -7.2437 -0.1513 21 7 1.2195 -4.7621 -0.2729 22 6 1.8318 -3.6539 0.0736 23 1 -0.4851 0.8400 0.0004 24 1 -0.1887 -1.4281 -1.5524 25 1 -1.2804 -3.5548 -2.1456 26 1 -2.0624 -5.1032 -2.5762 27 1 -3.1306 -7.2336 -3.1773 28 1 -2.2096 -9.3577 -2.3450 29 1 2.7081 -3.6992 0.7032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238954968.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:13 Heat of formation + Delta-G solvation = -4.705847 kcal Electronic energy + Delta-G solvation = -17895.293706 eV Core-core repulsion = 14723.053975 eV Total energy + Delta-G solvation = -3172.239732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.07266 -39.04433 -37.95348 -36.27138 -34.42484 -31.80312 -30.91993 -29.94722 -29.13172 -25.73471 -22.95443 -22.86443 -21.09874 -20.71892 -17.64502 -17.34338 -16.23149 -16.12352 -15.49288 -15.05686 -14.65134 -14.40346 -14.19224 -13.80119 -12.96569 -12.74029 -12.55488 -12.49082 -12.18120 -11.86719 -11.70061 -11.44519 -11.28873 -11.16433 -11.03713 -10.83537 -10.59124 -10.04680 -9.65062 -8.90989 -8.45982 -8.34966 -8.14288 -7.45848 -7.11287 -4.67899 1.17223 1.39117 2.25741 2.52354 2.85693 2.88162 2.90394 3.04626 3.64346 3.85319 4.44318 4.57807 5.05208 5.09490 5.38159 5.41634 5.51687 5.86306 5.97674 6.14144 6.20878 6.45553 6.53100 6.55713 6.69416 6.76476 6.86657 7.06913 7.07866 7.53534 7.64448 7.73940 8.18842 8.37374 8.48184 9.45850 9.73989 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.041038 B = 0.004113 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.135419 B = 6805.774994 C = 7411.621794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.424 4.424 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.148 4.148 11 C -0.113 4.113 12 C -0.024 4.024 13 C 0.002 3.998 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.071 4.071 18 Cl -0.070 7.070 19 C 0.109 3.891 20 F -0.107 7.107 21 N -0.433 5.433 22 C -0.013 4.013 23 H 0.290 0.710 24 H 0.129 0.871 25 H 0.103 0.897 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 -6.784 -4.125 8.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.151 4.151 3 Si 0.742 3.258 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.453 4.453 8 H 0.108 0.892 9 C 0.066 3.934 10 C -0.172 4.172 11 C -0.133 4.133 12 C -0.157 4.157 13 C 0.000 4.000 14 C -0.128 4.128 15 C -0.133 4.133 16 C -0.139 4.139 17 C -0.099 4.099 18 Cl -0.041 7.041 19 C 0.088 3.912 20 F -0.085 7.085 21 N -0.140 5.140 22 C -0.180 4.180 23 H 0.101 0.899 24 H 0.146 0.854 25 H 0.121 0.879 26 H 0.153 0.847 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.739 -7.551 -3.743 9.220 hybrid contribution 0.158 1.487 -0.037 1.496 sum -3.581 -6.064 -3.780 7.993 Atomic orbital electron populations 1.69771 1.07964 1.30512 1.30992 1.26148 0.94902 1.02179 0.91880 0.86169 0.80146 0.79011 0.80498 1.18356 1.19937 1.18467 1.19745 0.98416 0.90938 1.36159 0.89242 1.18668 0.91944 0.93717 0.89065 1.21313 0.98770 0.97023 1.00123 1.21238 0.99045 0.93127 0.99926 1.18499 0.98678 0.89876 1.08612 1.18797 0.94411 0.90965 0.95859 1.21181 0.94864 0.98692 0.98102 1.20906 1.00337 0.91420 1.00647 1.20739 0.95197 0.99172 0.98818 1.20915 0.99049 0.85823 1.04080 1.98342 1.86361 1.31480 1.87898 1.17438 0.86840 0.91684 0.95250 1.91571 1.49276 1.96936 1.70719 1.67094 1.06085 1.32125 1.08740 1.22498 1.02703 0.87588 1.05206 0.89906 0.85375 0.87907 0.84693 0.85119 0.85020 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.90 10.92 55.55 0.61 -17.29 15 2 C 0.07 1.59 5.17 -17.33 -0.09 1.50 15 3 Si 0.92 16.67 29.60 -169.99 -5.03 11.64 15 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 7 C -0.42 -10.19 9.06 -37.85 -0.34 -10.53 15 8 H 0.09 2.02 7.91 -52.48 -0.41 1.60 15 9 C 0.07 1.78 5.59 -106.64 -0.60 1.19 15 10 C -0.15 -3.58 8.74 -39.01 -0.34 -3.92 15 11 C -0.11 -2.53 9.38 -39.54 -0.37 -2.90 15 12 C -0.02 -0.56 6.74 -82.75 -0.56 -1.12 15 13 C 0.00 0.04 5.88 -104.83 -0.62 -0.58 15 14 C -0.11 -1.75 9.41 -39.18 -0.37 -2.12 15 15 C -0.11 -1.51 10.03 -39.64 -0.40 -1.91 15 16 C -0.12 -1.65 9.82 -39.45 -0.39 -2.03 15 17 C -0.07 -1.18 6.32 -39.48 -0.25 -1.42 15 18 Cl -0.07 -1.04 28.61 -51.86 -1.48 -2.53 15 19 C 0.11 2.15 7.25 -38.95 -0.28 1.87 15 20 F -0.11 -2.34 14.86 2.25 0.03 -2.31 15 21 N -0.43 -10.80 8.29 -9.11 -0.08 -10.87 15 22 C -0.01 -0.32 10.97 -16.77 -0.18 -0.50 15 23 H 0.29 6.05 8.30 -40.82 -0.34 5.72 15 24 H 0.13 3.10 6.19 -52.49 -0.32 2.78 15 25 H 0.10 1.95 6.15 -52.49 -0.32 1.62 15 26 H 0.14 1.94 6.15 -52.48 -0.32 1.61 15 27 H 0.13 1.26 8.06 -52.48 -0.42 0.84 15 28 H 0.13 1.43 8.06 -52.48 -0.42 1.00 15 29 H 0.13 2.97 8.06 -52.49 -0.42 2.55 15 LS Contribution 276.84 15.07 4.17 4.17 Total: -1.00 -26.62 276.84 -8.35 -34.98 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -1.79 Total: 4.70 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -4.79 Total: -22.48 kcal Atomic # 7 Polarization: -28.70 SS G_CDS: 0.53 Total: -28.16 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.03 Total: -2.31 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.64 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.48 Total: -2.53 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.62 -8.35 -34.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238954968.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.269 kcal (2) G-P(sol) polarization free energy of solvation -26.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds