Wall clock time and date at job start Mon Mar 30 2020 01:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86803 * 119.99549 * 2 1 4 4 H 1.48503 * 109.47029 * 240.00194 * 3 2 1 5 5 H 1.48497 * 109.47237 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46863 * 120.00279 * 3 2 1 7 7 C 1.40010 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00196 * 197.62785 * 7 2 1 9 9 C 1.41050 * 119.99860 * 17.62987 * 7 2 1 10 10 C 1.41308 * 120.55182 * 23.70655 * 9 7 2 11 11 C 1.36582 * 118.41505 * 180.25581 * 10 9 7 12 12 C 1.39936 * 119.46825 * 359.48014 * 11 10 9 13 13 C 1.47895 * 119.45581 * 180.25676 * 12 11 10 14 14 C 1.39650 * 120.15305 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.89743 * 179.72255 * 14 13 12 16 16 C 1.38442 * 120.22119 * 0.57189 * 15 14 13 17 17 C 1.38389 * 120.31259 * 359.68454 * 16 15 14 18 18 Cl 1.73602 * 119.95144 * 180.02562 * 17 16 15 19 19 C 1.38351 * 120.09569 * 0.03716 * 17 16 15 20 20 F 1.35092 * 120.10953 * 180.02562 * 19 17 16 21 21 N 1.33043 * 121.08842 * 0.53617 * 12 11 10 22 22 C 1.31264 * 121.72363 * 359.72169 * 21 12 11 23 23 H 0.96997 * 120.00621 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.79264 * 359.97438 * 10 9 7 25 25 H 1.07999 * 120.26579 * 179.70260 * 11 10 9 26 26 H 1.08004 * 120.05220 * 359.97438 * 14 13 12 27 27 H 1.08008 * 119.88693 * 180.25363 * 15 14 13 28 28 H 1.08004 * 119.84729 * 179.70018 * 16 15 14 29 29 H 1.07996 * 119.79771 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0956 1.6966 -1.2126 5 1 1.2768 2.7465 0.0006 6 1 3.0956 1.6965 1.2124 7 6 2.0081 -1.2125 -0.0005 8 1 3.0501 -1.2346 0.2827 9 6 1.3526 -2.4052 -0.3710 10 6 0.2048 -2.3680 -1.1944 11 6 -0.3986 -3.5487 -1.5220 12 6 0.1376 -4.7508 -1.0471 13 6 -0.5126 -6.0296 -1.4067 14 6 -1.6526 -6.0343 -2.2133 15 6 -2.2513 -7.2299 -2.5500 16 6 -1.7330 -8.4251 -2.0815 17 6 -0.6068 -8.4304 -1.2772 18 17 0.0356 -9.9346 -0.6954 19 6 0.0077 -7.2388 -0.9360 20 9 1.1074 -7.2437 -0.1513 21 7 1.2195 -4.7621 -0.2729 22 6 1.8318 -3.6539 0.0736 23 1 -0.4851 0.8400 0.0004 24 1 -0.1887 -1.4281 -1.5524 25 1 -1.2804 -3.5548 -2.1456 26 1 -2.0624 -5.1032 -2.5762 27 1 -3.1306 -7.2336 -3.1773 28 1 -2.2096 -9.3577 -2.3450 29 1 2.7081 -3.6992 0.7032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238954968.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:13 Heat of formation + Delta-G solvation = -17.459776 kcal Electronic energy + Delta-G solvation = -17895.846758 eV Core-core repulsion = 14723.053975 eV Total energy + Delta-G solvation = -3172.792784 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.61661 -40.61240 -39.44377 -37.51231 -36.13110 -33.33555 -32.68932 -31.25288 -30.72560 -27.40753 -24.48429 -24.39351 -22.66728 -22.30451 -19.40792 -18.74479 -17.70357 -17.57761 -17.08062 -16.56887 -16.25446 -15.83644 -15.76073 -15.21467 -14.50212 -14.42845 -14.02615 -13.86416 -13.69632 -13.55537 -13.29654 -12.95980 -12.78092 -12.46978 -12.29985 -12.26411 -11.91671 -11.73415 -11.29194 -10.40898 -10.28398 -9.95314 -9.62956 -9.12305 -8.79748 -6.49092 -0.19109 0.09774 0.88420 1.01803 1.09360 1.38165 1.50025 1.55272 2.13663 2.45509 2.80070 3.26183 3.60944 3.69230 3.89407 4.06894 4.24097 4.31837 4.58052 4.64625 4.77838 4.92834 5.02076 5.08126 5.10684 5.27252 5.30635 5.40434 5.68173 5.82123 5.90063 5.95127 6.39072 6.60671 6.68134 7.63843 8.09583 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.041038 B = 0.004113 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.135419 B = 6805.774994 C = 7411.621794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.036 3.964 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.459 4.459 8 H 0.091 0.909 9 C 0.046 3.954 10 C -0.163 4.163 11 C -0.115 4.115 12 C -0.028 4.028 13 C -0.038 4.038 14 C -0.101 4.101 15 C -0.096 4.096 16 C -0.096 4.096 17 C -0.080 4.080 18 Cl -0.060 7.060 19 C 0.078 3.922 20 F -0.132 7.132 21 N -0.457 5.457 22 C -0.042 4.042 23 H 0.299 0.701 24 H 0.125 0.875 25 H 0.139 0.861 26 H 0.153 0.847 27 H 0.183 0.817 28 H 0.172 0.828 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 -7.658 -5.832 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.182 1.182 7 C -0.487 4.487 8 H 0.109 0.891 9 C 0.041 3.959 10 C -0.188 4.188 11 C -0.135 4.135 12 C -0.163 4.163 13 C -0.040 4.040 14 C -0.119 4.119 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.108 4.108 18 Cl -0.031 7.031 19 C 0.057 3.943 20 F -0.110 7.110 21 N -0.164 5.164 22 C -0.206 4.206 23 H 0.110 0.890 24 H 0.142 0.858 25 H 0.156 0.844 26 H 0.171 0.829 27 H 0.200 0.800 28 H 0.190 0.810 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.978 -8.439 -5.437 11.684 hybrid contribution 0.667 1.435 0.400 1.632 sum -5.312 -7.004 -5.037 10.132 Atomic orbital electron populations 1.69792 1.09265 1.31918 1.31376 1.26974 0.95607 1.05014 0.90739 0.85081 0.78779 0.74602 0.80383 1.18170 1.18689 1.18151 1.19978 0.98819 0.91827 1.38079 0.89118 1.18938 0.92836 0.94215 0.89930 1.21402 0.99132 0.97645 1.00634 1.21554 0.99873 0.92186 0.99906 1.19157 0.97927 0.91939 1.07231 1.18921 0.96676 0.89634 0.98809 1.21510 0.93125 1.00945 0.96369 1.21466 1.00785 0.89682 0.99406 1.21336 0.93087 1.01263 0.95811 1.21116 0.99792 0.85279 1.04606 1.98346 1.86496 1.30351 1.87930 1.17844 0.87040 0.93175 0.96208 1.91498 1.50724 1.97136 1.71688 1.67128 1.07245 1.32230 1.09787 1.22622 1.03576 0.88012 1.06438 0.88981 0.85770 0.84353 0.82949 0.80009 0.81025 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.96 10.92 21.84 0.24 -37.72 15 2 C 0.04 1.64 5.17 85.28 0.44 2.08 15 3 Si 0.99 34.34 29.60 68.60 2.03 36.37 15 4 H -0.26 -8.77 7.11 99.48 0.71 -8.06 15 5 H -0.26 -8.50 7.11 99.48 0.71 -7.80 15 6 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 7 C -0.46 -23.11 9.06 23.39 0.21 -22.90 15 8 H 0.09 4.33 7.91 -2.91 -0.02 4.31 15 9 C 0.05 2.41 5.59 -21.17 -0.12 2.29 15 10 C -0.16 -8.18 8.74 22.64 0.20 -7.98 15 11 C -0.12 -5.20 9.38 22.29 0.21 -4.99 15 12 C -0.03 -1.34 6.74 41.93 0.28 -1.05 15 13 C -0.04 -1.51 5.88 -20.00 -0.12 -1.63 15 14 C -0.10 -2.87 9.41 22.53 0.21 -2.66 15 15 C -0.10 -1.97 10.03 22.23 0.22 -1.75 15 16 C -0.10 -2.15 9.82 22.35 0.22 -1.93 15 17 C -0.08 -2.47 6.32 22.33 0.14 -2.33 15 18 Cl -0.06 -1.69 28.61 -2.72 -0.08 -1.77 15 19 C 0.08 3.07 7.25 22.68 0.16 3.24 15 20 F -0.13 -6.00 14.86 44.97 0.67 -5.33 15 21 N -0.46 -23.89 8.29 -182.73 -1.51 -25.41 15 22 C -0.04 -2.20 10.97 85.44 0.94 -1.26 15 23 H 0.30 12.57 8.30 -92.71 -0.77 11.80 15 24 H 0.12 6.21 6.19 -2.91 -0.02 6.19 15 25 H 0.14 5.02 6.15 -2.91 -0.02 5.00 15 26 H 0.15 3.75 6.15 -2.91 -0.02 3.73 15 27 H 0.18 2.05 8.06 -2.91 -0.02 2.02 15 28 H 0.17 2.55 8.06 -2.91 -0.02 2.53 15 29 H 0.13 6.57 8.06 -2.91 -0.02 6.54 15 Total: -1.00 -62.03 276.84 5.55 -56.48 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.20 Total: 18.27 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.00 Total: -40.89 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -1.28 Total: -63.13 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.67 Total: -5.33 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -62.03 5.55 -56.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238954968.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.018 kcal (2) G-P(sol) polarization free energy of solvation -62.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds