Wall clock time and date at job start Mon Mar 30 2020 01:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86805 * 119.99909 * 2 1 4 4 H 1.48495 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46917 * 300.00198 * 3 2 1 6 6 H 1.48496 * 109.47016 * 59.99686 * 3 2 1 7 7 C 1.40167 * 120.00479 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00162 * 193.73836 * 7 2 1 9 9 C 1.40910 * 119.99728 * 13.73496 * 7 2 1 10 10 C 1.41130 * 121.11129 * 24.84871 * 9 7 2 11 11 C 1.36472 * 119.11107 * 180.29644 * 10 9 7 12 12 N 1.32218 * 121.51240 * 359.72639 * 11 10 9 13 13 C 1.31657 * 122.51495 * 359.97438 * 12 11 10 14 14 C 1.39346 * 120.65182 * 359.97438 * 13 12 11 15 15 C 1.47795 * 120.78802 * 180.02562 * 14 13 12 16 16 C 1.39702 * 120.15682 * 64.99812 * 15 14 13 17 17 C 1.37872 * 119.89079 * 180.02562 * 16 15 14 18 18 C 1.38456 * 120.22522 * 0.02562 * 17 16 15 19 19 C 1.38403 * 120.32425 * 359.97438 * 18 17 16 20 20 Cl 1.73604 * 119.94643 * 180.02562 * 19 18 17 21 21 C 1.38316 * 120.10096 * 0.27419 * 19 18 17 22 22 F 1.35106 * 120.11329 * 179.70260 * 21 19 18 23 23 H 0.96998 * 120.00464 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.44480 * 0.04880 * 10 9 7 25 25 H 1.07995 * 119.24382 * 179.74307 * 11 10 9 26 26 H 1.07995 * 119.67741 * 179.97438 * 13 12 11 27 27 H 1.07991 * 120.05573 * 0.02562 * 16 15 14 28 28 H 1.08003 * 119.88810 * 180.02562 * 17 16 15 29 29 H 1.08003 * 119.83861 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8820 2.3965 1.2124 7 6 2.0078 -1.2138 0.0005 8 1 3.0646 -1.2270 0.2227 9 6 1.3335 -2.4168 -0.2887 10 6 0.1530 -2.4234 -1.0620 11 6 -0.4703 -3.6114 -1.3122 12 7 0.0096 -4.7540 -0.8515 13 6 1.1085 -4.8203 -0.1294 14 6 1.8236 -3.6659 0.1835 15 6 3.0578 -3.7368 0.9934 16 6 4.1852 -4.3967 0.4983 17 6 5.3335 -4.4600 1.2587 18 6 5.3731 -3.8722 2.5117 19 6 4.2615 -3.2162 3.0111 20 17 4.3221 -2.4820 4.5831 21 6 3.1008 -3.1490 2.2619 22 9 2.0136 -2.5138 2.7517 23 1 -0.4851 0.8400 -0.0004 24 1 -0.2540 -1.5001 -1.4472 25 1 -1.3761 -3.6184 -1.9002 26 1 1.4593 -5.7786 0.2239 27 1 4.1573 -4.8565 -0.4784 28 1 6.2052 -4.9698 0.8757 29 1 6.2760 -3.9252 3.1019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238958212.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:24 Heat of formation + Delta-G solvation = -8.079013 kcal Electronic energy + Delta-G solvation = -18645.275482 eV Core-core repulsion = 15472.889479 eV Total energy + Delta-G solvation = -3172.386003 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.07458 -38.96091 -37.89250 -36.18584 -34.28206 -32.19937 -30.36052 -29.93985 -28.41214 -26.07114 -23.15753 -22.23642 -21.50155 -20.45994 -17.73099 -17.14381 -16.00597 -15.96092 -15.64097 -14.99953 -14.56367 -14.26498 -14.11951 -13.92004 -12.81632 -12.68847 -12.54130 -12.48347 -12.35749 -11.87512 -11.51166 -11.33563 -11.25991 -11.03842 -10.99989 -10.67581 -10.35774 -9.91958 -9.58413 -8.63796 -8.26535 -8.12125 -7.92119 -7.59227 -6.96131 -4.73900 1.39765 1.50835 2.31167 2.59712 2.73239 2.96264 3.01856 3.16482 3.76565 3.90443 4.53089 4.64532 5.11599 5.28925 5.45444 5.53284 5.56444 5.75278 6.03055 6.23088 6.38069 6.38345 6.56453 6.69880 6.79566 6.81719 7.04128 7.17086 7.24160 7.38136 7.71327 7.96123 8.30759 8.57661 8.60728 9.51774 9.91022 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.009020 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.249316 B = 3103.620210 C = 4339.350234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.433 4.433 8 H 0.081 0.919 9 C 0.151 3.849 10 C -0.206 4.206 11 C 0.083 3.917 12 N -0.579 5.579 13 C 0.138 3.862 14 C -0.250 4.250 15 C 0.005 3.995 16 C -0.093 4.093 17 C -0.125 4.125 18 C -0.108 4.108 19 C -0.078 4.078 20 Cl -0.070 7.070 21 C 0.126 3.874 22 F -0.113 7.113 23 H 0.286 0.714 24 H 0.130 0.870 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.309 -2.520 2.889 9.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.099 0.901 9 C 0.143 3.857 10 C -0.228 4.228 11 C -0.064 4.064 12 N -0.293 5.293 13 C -0.021 4.021 14 C -0.256 4.256 15 C 0.003 3.997 16 C -0.111 4.111 17 C -0.143 4.143 18 C -0.127 4.127 19 C -0.106 4.106 20 Cl -0.041 7.041 21 C 0.105 3.895 22 F -0.091 7.091 23 H 0.097 0.903 24 H 0.148 0.852 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.536 -3.013 2.828 8.595 hybrid contribution 0.575 1.886 0.541 2.045 sum 8.111 -1.127 3.370 8.855 Atomic orbital electron populations 1.69725 1.07783 1.29864 1.32368 1.26017 0.94801 1.01743 0.91659 0.86215 0.81178 0.80397 0.78957 1.18011 1.19303 1.19456 1.19565 0.96892 0.90428 1.39402 0.90093 1.17689 0.90369 0.90933 0.86732 1.21975 0.99535 0.98383 1.02941 1.21742 0.98061 0.88863 0.97729 1.67325 1.15257 1.29371 1.17328 1.22026 0.90901 0.95430 0.93713 1.19247 0.99814 0.95655 1.10910 1.18730 0.94977 0.95221 0.90748 1.21344 0.91369 0.98576 0.99837 1.20947 0.98476 1.00918 0.93953 1.20778 0.96619 0.98660 0.96618 1.20918 0.95762 1.04875 0.89044 1.98343 1.98613 1.81879 1.25302 1.17705 0.82956 0.96333 0.92468 1.91566 1.51790 1.78760 1.86961 0.90291 0.85245 0.86313 0.86065 0.84999 0.85229 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.00 10.81 55.56 0.60 -18.40 15 2 C 0.08 1.90 5.25 -17.32 -0.09 1.81 15 3 Si 0.91 18.10 29.58 -169.99 -5.03 13.07 15 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 7 C -0.43 -10.89 7.68 -37.85 -0.29 -11.18 15 8 H 0.08 2.02 7.18 -52.49 -0.38 1.65 15 9 C 0.15 3.83 5.51 -106.25 -0.59 3.24 15 10 C -0.21 -5.16 8.73 -39.12 -0.34 -5.50 15 11 C 0.08 1.95 11.09 -18.02 -0.20 1.75 15 12 N -0.58 -13.76 10.32 -13.36 -0.14 -13.90 15 13 C 0.14 3.12 10.92 -17.21 -0.19 2.93 15 14 C -0.25 -5.82 5.07 -104.04 -0.53 -6.35 15 15 C 0.01 0.11 4.49 -104.83 -0.47 -0.36 15 16 C -0.09 -1.53 9.75 -39.17 -0.38 -1.91 15 17 C -0.12 -1.70 10.03 -39.63 -0.40 -2.10 15 18 C -0.11 -1.55 9.82 -39.44 -0.39 -1.93 15 19 C -0.08 -1.36 6.32 -39.49 -0.25 -1.61 15 20 Cl -0.07 -1.13 28.61 -51.86 -1.48 -2.61 15 21 C 0.13 2.59 6.55 -38.94 -0.26 2.33 15 22 F -0.11 -2.64 15.79 2.25 0.04 -2.60 15 23 H 0.29 6.33 8.29 -40.82 -0.34 5.99 15 24 H 0.13 3.27 6.15 -52.49 -0.32 2.95 15 25 H 0.12 2.47 8.06 -52.49 -0.42 2.04 15 26 H 0.12 2.38 8.06 -52.49 -0.42 1.96 15 27 H 0.13 1.96 8.06 -52.49 -0.42 1.54 15 28 H 0.13 1.32 8.06 -52.48 -0.42 0.90 15 29 H 0.13 1.50 8.06 -52.48 -0.42 1.08 15 LS Contribution 279.55 15.07 4.21 4.21 Total: -1.00 -27.28 279.55 -8.12 -35.40 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -1.95 Total: 3.71 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -4.37 Total: -18.89 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.46 Total: -32.29 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.48 Total: -2.61 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.28 -8.12 -35.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238958212.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.318 kcal (2) G-P(sol) polarization free energy of solvation -27.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds