Wall clock time and date at job start Mon Mar 30 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86795 * 119.99910 * 2 1 4 4 H 1.48503 * 109.47301 * 239.99732 * 3 2 1 5 5 H 1.48501 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47347 * 119.99997 * 3 2 1 7 7 C 1.40142 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.40787 * 120.00406 * 0.02562 * 7 2 1 10 10 N 1.33709 * 119.94086 * 0.26408 * 9 7 2 11 11 C 1.31266 * 121.63848 * 180.26637 * 10 9 7 12 12 C 1.39072 * 121.34982 * 359.72951 * 11 10 9 13 13 C 1.38378 * 119.72659 * 359.97438 * 12 11 10 14 14 C 1.39715 * 118.47024 * 359.97438 * 13 12 11 15 15 C 1.47758 * 120.64772 * 179.97438 * 14 13 12 16 16 C 1.39723 * 120.16232 * 65.00374 * 15 14 13 17 17 C 1.37856 * 119.89674 * 180.02562 * 16 15 14 18 18 C 1.38475 * 120.22382 * 0.02562 * 17 16 15 19 19 C 1.38404 * 120.32872 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.94680 * 179.97438 * 19 18 17 21 21 C 1.38317 * 120.09995 * 0.26152 * 19 18 17 22 22 F 1.35099 * 120.11449 * 179.72445 * 21 19 18 23 23 H 0.97003 * 120.00532 * 0.02562 * 1 2 3 24 24 H 1.08006 * 119.33243 * 179.74729 * 11 10 9 25 25 H 1.07996 * 120.14044 * 180.02562 * 12 11 10 26 26 H 1.07993 * 120.76017 * 179.97438 * 13 12 11 27 27 H 1.08002 * 120.05424 * 359.97438 * 16 15 14 28 28 H 1.07998 * 119.89305 * 179.97438 * 17 16 15 29 29 H 1.07996 * 119.83345 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0947 1.6964 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0076 -1.2137 0.0005 8 1 3.0877 -1.2137 0.0010 9 6 1.3037 -2.4330 0.0005 10 7 -0.0333 -2.4316 -0.0053 11 6 -0.7230 -3.5485 -0.0003 12 6 -0.0927 -4.7881 0.0057 13 6 1.2895 -4.8551 0.0060 14 6 2.0142 -3.6606 -0.0004 15 6 3.4917 -3.6759 0.0001 16 6 4.1887 -4.1998 -1.0916 17 6 5.5672 -4.2118 -1.0851 18 6 6.2636 -3.7070 0.0001 19 6 5.5825 -3.1859 1.0865 20 17 6.4655 -2.5562 2.4420 21 6 4.1995 -3.1715 1.0963 22 9 3.5344 -2.6680 2.1590 23 1 -0.4851 0.8400 -0.0004 24 1 -1.8022 -3.5040 -0.0012 25 1 -0.6794 -5.6948 0.0094 26 1 1.7963 -5.8087 0.0111 27 1 3.6484 -4.5954 -1.9390 28 1 6.1059 -4.6171 -1.9289 29 1 7.3435 -3.7192 -0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238958466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:17 Heat of formation + Delta-G solvation = 2.604237 kcal Electronic energy + Delta-G solvation = -18634.167130 eV Core-core repulsion = 15462.244387 eV Total energy + Delta-G solvation = -3171.922743 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.13513 -38.91357 -37.77723 -36.19298 -33.76408 -32.22525 -30.39749 -29.99326 -28.57344 -25.79152 -23.20426 -22.21944 -21.41018 -20.45406 -17.59271 -17.20004 -16.11686 -15.97103 -15.61463 -14.93240 -14.53327 -14.17839 -14.11685 -13.88461 -12.79661 -12.70811 -12.56408 -12.32380 -12.08764 -11.74311 -11.29036 -11.22960 -11.19984 -11.08504 -10.95685 -10.68102 -10.42625 -10.02853 -9.47404 -8.64382 -8.30536 -8.14831 -7.69334 -7.52409 -6.53686 -4.65007 1.39976 1.49688 2.30348 2.63998 2.88665 3.02982 3.06621 3.17587 3.87268 3.90410 4.60730 4.65640 5.11554 5.30087 5.48043 5.54396 5.76040 5.98026 6.00190 6.14752 6.33944 6.38863 6.47245 6.57684 6.70496 6.81913 6.97198 7.12780 7.24625 7.44730 7.60218 7.90679 8.10106 8.50653 8.79355 9.97107 10.16330 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.008844 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.415602 B = 3165.229806 C = 4371.815095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.070 3.930 3 Si 0.902 3.098 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.408 4.408 8 H 0.082 0.918 9 C 0.274 3.726 10 N -0.480 5.480 11 C 0.137 3.863 12 C -0.323 4.323 13 C -0.024 4.024 14 C -0.253 4.253 15 C 0.009 3.991 16 C -0.093 4.093 17 C -0.122 4.122 18 C -0.110 4.110 19 C -0.076 4.076 20 Cl -0.070 7.070 21 C 0.117 3.883 22 F -0.116 7.116 23 H 0.277 0.723 24 H 0.120 0.880 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.547 -4.491 -0.957 9.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.157 4.157 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.438 4.438 8 H 0.100 0.900 9 C 0.152 3.848 10 N -0.191 5.191 11 C -0.032 4.032 12 C -0.346 4.346 13 C -0.048 4.048 14 C -0.258 4.258 15 C 0.007 3.993 16 C -0.112 4.112 17 C -0.141 4.141 18 C -0.129 4.129 19 C -0.103 4.103 20 Cl -0.041 7.041 21 C 0.096 3.904 22 F -0.094 7.094 23 H 0.088 0.912 24 H 0.138 0.862 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.008 -3.398 -0.790 8.734 hybrid contribution 0.745 0.005 0.342 0.820 sum 8.752 -3.393 -0.447 9.398 Atomic orbital electron populations 1.70087 1.07263 1.28341 1.26749 1.26108 0.94922 1.01273 0.93440 0.86438 0.80355 0.80249 0.80389 1.18626 1.19865 1.18474 1.19544 0.94321 0.89455 1.40438 0.89983 1.18445 0.87959 0.90606 0.87824 1.68769 1.06900 1.26587 1.16885 1.22640 0.98893 0.88835 0.92855 1.21199 0.94437 0.97934 1.21038 1.20820 0.93807 0.95361 0.94839 1.19067 0.89363 0.94987 1.22354 1.18763 0.94068 0.95295 0.91141 1.21336 0.93507 0.98895 0.97433 1.20958 0.94121 1.00995 0.98005 1.20773 0.99928 0.99974 0.92233 1.20907 0.90459 1.06483 0.92495 1.98343 1.75425 1.85882 1.44456 1.17714 0.87420 0.99087 0.86139 1.91548 1.80518 1.84249 1.53069 0.91205 0.86218 0.88503 0.88473 0.85044 0.85222 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.43 11.46 55.56 0.64 -17.79 15 2 C 0.07 1.77 5.50 -17.32 -0.10 1.67 15 3 Si 0.90 18.79 29.56 -169.99 -5.02 13.76 15 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 5 H -0.27 -5.47 7.11 56.52 0.40 -5.06 15 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 7 C -0.41 -10.80 8.04 -37.90 -0.30 -11.10 15 8 H 0.08 2.11 6.03 -52.48 -0.32 1.79 15 9 C 0.27 7.33 6.46 -84.71 -0.55 6.78 15 10 N -0.48 -12.99 7.85 -10.91 -0.09 -13.08 15 11 C 0.14 3.24 11.17 -17.48 -0.20 3.04 15 12 C -0.32 -7.00 10.10 -39.22 -0.40 -7.40 15 13 C -0.02 -0.52 9.88 -38.98 -0.39 -0.90 15 14 C -0.25 -5.97 5.07 -104.08 -0.53 -6.50 15 15 C 0.01 0.19 4.47 -104.83 -0.47 -0.28 15 16 C -0.09 -1.57 9.75 -39.17 -0.38 -1.95 15 17 C -0.12 -1.71 10.03 -39.63 -0.40 -2.10 15 18 C -0.11 -1.59 9.82 -39.43 -0.39 -1.98 15 19 C -0.08 -1.32 6.32 -39.49 -0.25 -1.57 15 20 Cl -0.07 -1.12 28.61 -51.86 -1.48 -2.60 15 21 C 0.12 2.40 5.95 -38.93 -0.23 2.17 15 22 F -0.12 -2.67 15.72 2.25 0.04 -2.63 15 23 H 0.28 6.55 8.29 -40.82 -0.34 6.21 15 24 H 0.12 2.49 8.06 -52.48 -0.42 2.06 15 25 H 0.10 1.82 8.06 -52.49 -0.42 1.39 15 26 H 0.10 1.83 8.06 -52.49 -0.42 1.41 15 27 H 0.13 2.03 8.06 -52.49 -0.42 1.61 15 28 H 0.13 1.35 8.06 -52.49 -0.42 0.92 15 29 H 0.13 1.52 8.06 -52.49 -0.42 1.09 15 LS Contribution 279.76 15.07 4.22 4.22 Total: -1.00 -28.56 279.76 -8.26 -36.82 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -1.99 Total: 1.43 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -4.57 Total: -20.12 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.55 Total: -30.87 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.76 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.48 Total: -2.60 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.56 -8.26 -36.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238958466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.423 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds