Wall clock time and date at job start Mon Mar 30 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86795 * 119.99910 * 2 1 4 4 H 1.48503 * 109.47301 * 239.99732 * 3 2 1 5 5 H 1.48501 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47347 * 119.99997 * 3 2 1 7 7 C 1.40142 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.40787 * 120.00406 * 0.02562 * 7 2 1 10 10 N 1.33709 * 119.94086 * 0.26408 * 9 7 2 11 11 C 1.31266 * 121.63848 * 180.26637 * 10 9 7 12 12 C 1.39072 * 121.34982 * 359.72951 * 11 10 9 13 13 C 1.38378 * 119.72659 * 359.97438 * 12 11 10 14 14 C 1.39715 * 118.47024 * 359.97438 * 13 12 11 15 15 C 1.47758 * 120.64772 * 179.97438 * 14 13 12 16 16 C 1.39723 * 120.16232 * 65.00374 * 15 14 13 17 17 C 1.37856 * 119.89674 * 180.02562 * 16 15 14 18 18 C 1.38475 * 120.22382 * 0.02562 * 17 16 15 19 19 C 1.38404 * 120.32872 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.94680 * 179.97438 * 19 18 17 21 21 C 1.38317 * 120.09995 * 0.26152 * 19 18 17 22 22 F 1.35099 * 120.11449 * 179.72445 * 21 19 18 23 23 H 0.97003 * 120.00532 * 0.02562 * 1 2 3 24 24 H 1.08006 * 119.33243 * 179.74729 * 11 10 9 25 25 H 1.07996 * 120.14044 * 180.02562 * 12 11 10 26 26 H 1.07993 * 120.76017 * 179.97438 * 13 12 11 27 27 H 1.08002 * 120.05424 * 359.97438 * 16 15 14 28 28 H 1.07998 * 119.89305 * 179.97438 * 17 16 15 29 29 H 1.07996 * 119.83345 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0947 1.6964 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0076 -1.2137 0.0005 8 1 3.0877 -1.2137 0.0010 9 6 1.3037 -2.4330 0.0005 10 7 -0.0333 -2.4316 -0.0053 11 6 -0.7230 -3.5485 -0.0003 12 6 -0.0927 -4.7881 0.0057 13 6 1.2895 -4.8551 0.0060 14 6 2.0142 -3.6606 -0.0004 15 6 3.4917 -3.6759 0.0001 16 6 4.1887 -4.1998 -1.0916 17 6 5.5672 -4.2118 -1.0851 18 6 6.2636 -3.7070 0.0001 19 6 5.5825 -3.1859 1.0865 20 17 6.4655 -2.5562 2.4420 21 6 4.1995 -3.1715 1.0963 22 9 3.5344 -2.6680 2.1590 23 1 -0.4851 0.8400 -0.0004 24 1 -1.8022 -3.5040 -0.0012 25 1 -0.6794 -5.6948 0.0094 26 1 1.7963 -5.8087 0.0111 27 1 3.6484 -4.5954 -1.9390 28 1 6.1059 -4.6171 -1.9289 29 1 7.3435 -3.7192 -0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238958466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:16 Heat of formation + Delta-G solvation = -12.015221 kcal Electronic energy + Delta-G solvation = -18634.801077 eV Core-core repulsion = 15462.244387 eV Total energy + Delta-G solvation = -3172.556690 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.73323 -40.46520 -39.33739 -37.48934 -35.59787 -33.79468 -32.19481 -31.31475 -30.15636 -27.61242 -24.72960 -23.65479 -23.12794 -22.03807 -19.43961 -18.62732 -17.73462 -17.35062 -17.20501 -16.56544 -16.18760 -15.97921 -15.44370 -15.34179 -14.47193 -14.22950 -14.07044 -13.87184 -13.74826 -13.23584 -12.94366 -12.84758 -12.82042 -12.51805 -12.37911 -12.18831 -11.94852 -11.66036 -11.28422 -10.26259 -9.87514 -9.61166 -9.53119 -9.22346 -8.36101 -6.54463 0.08161 0.14008 0.83946 1.01916 1.16029 1.32845 1.43999 1.49392 2.15936 2.58859 2.79416 3.27208 3.83343 3.85229 4.08685 4.15995 4.30077 4.34228 4.41881 4.72822 4.79588 4.95443 5.04350 5.06864 5.16123 5.29417 5.41012 5.51000 5.63340 5.80048 5.91620 6.10377 6.24008 6.66135 6.92583 8.13710 8.36174 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.008844 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.415602 B = 3165.229806 C = 4371.815095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.027 3.973 3 Si 0.968 3.032 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.441 4.441 8 H 0.078 0.922 9 C 0.244 3.756 10 N -0.521 5.521 11 C 0.111 3.889 12 C -0.312 4.312 13 C -0.035 4.035 14 C -0.254 4.254 15 C -0.024 4.024 16 C -0.094 4.094 17 C -0.100 4.100 18 C -0.094 4.094 19 C -0.083 4.083 20 Cl -0.062 7.062 21 C 0.082 3.918 22 F -0.144 7.144 23 H 0.281 0.719 24 H 0.139 0.861 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.144 0.856 28 H 0.180 0.820 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.031 -5.733 -2.142 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.471 4.471 8 H 0.096 0.904 9 C 0.120 3.880 10 N -0.234 5.234 11 C -0.055 4.055 12 C -0.334 4.334 13 C -0.059 4.059 14 C -0.258 4.258 15 C -0.026 4.026 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.112 4.112 19 C -0.111 4.111 20 Cl -0.034 7.034 21 C 0.062 3.938 22 F -0.122 7.122 23 H 0.092 0.908 24 H 0.157 0.843 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.162 0.838 28 H 0.197 0.803 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.474 -4.673 -1.979 11.639 hybrid contribution 0.061 0.167 0.696 0.718 sum 10.535 -4.506 -1.283 11.530 Atomic orbital electron populations 1.70172 1.08631 1.29324 1.28552 1.26917 0.95685 1.04287 0.92665 0.85465 0.79158 0.76359 0.80196 1.17748 1.18408 1.18942 1.19689 0.94235 0.90446 1.42765 0.90384 1.18869 0.88368 0.92178 0.88578 1.68681 1.07704 1.28515 1.18459 1.23086 0.99966 0.89163 0.93310 1.21580 0.94940 0.98411 1.18517 1.21244 0.94056 0.96249 0.94337 1.19426 0.91528 0.94557 1.20309 1.18818 0.92792 0.98016 0.92950 1.21559 0.95049 0.98133 0.96440 1.21470 0.92822 0.98658 0.98860 1.21319 1.01838 0.97357 0.90708 1.21113 0.89487 1.06714 0.93750 1.98342 1.74778 1.85858 1.44383 1.18039 0.88818 1.00890 0.86044 1.91464 1.81340 1.85051 1.54381 0.90793 0.84337 0.85107 0.85273 0.83825 0.80294 0.81073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.76 11.46 21.86 0.25 -40.51 15 2 C 0.03 1.44 5.50 85.32 0.47 1.91 15 3 Si 0.97 39.59 29.56 68.60 2.03 41.62 15 4 H -0.25 -9.88 7.11 99.48 0.71 -9.18 15 5 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 7 C -0.44 -24.35 8.04 23.36 0.19 -24.16 15 8 H 0.08 4.19 6.03 -2.91 -0.02 4.18 15 9 C 0.24 13.52 6.46 40.37 0.26 13.78 15 10 N -0.52 -29.34 7.85 -188.42 -1.48 -30.82 15 11 C 0.11 5.36 11.17 84.98 0.95 6.31 15 12 C -0.31 -13.23 10.10 22.50 0.23 -13.00 15 13 C -0.03 -1.48 9.88 22.66 0.22 -1.25 15 14 C -0.25 -12.14 5.07 -19.51 -0.10 -12.23 15 15 C -0.02 -0.98 4.47 -20.00 -0.09 -1.07 15 16 C -0.09 -2.91 9.75 22.54 0.22 -2.69 15 17 C -0.10 -2.31 10.03 22.24 0.22 -2.09 15 18 C -0.09 -2.31 9.82 22.37 0.22 -2.09 15 19 C -0.08 -2.75 6.32 22.33 0.14 -2.61 15 20 Cl -0.06 -1.91 28.61 -2.72 -0.08 -1.99 15 21 C 0.08 3.39 5.95 22.69 0.14 3.53 15 22 F -0.14 -6.92 15.72 44.97 0.71 -6.21 15 23 H 0.28 13.90 8.29 -92.71 -0.77 13.13 15 24 H 0.14 5.85 8.06 -2.91 -0.02 5.82 15 25 H 0.13 4.57 8.06 -2.91 -0.02 4.54 15 26 H 0.13 4.57 8.06 -2.91 -0.02 4.55 15 27 H 0.14 4.03 8.06 -2.91 -0.02 4.01 15 28 H 0.18 2.45 8.06 -2.91 -0.02 2.43 15 29 H 0.17 2.91 8.06 -2.91 -0.02 2.88 15 Total: -1.00 -66.25 279.76 5.69 -60.56 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.19 Total: 13.02 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 3.07 Total: -35.68 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.23 Total: -71.33 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.71 Total: -6.21 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -66.25 5.69 -60.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238958466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.547 kcal (2) G-P(sol) polarization free energy of solvation -66.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds