Wall clock time and date at job start Mon Mar 30 2020 01:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86795 * 120.00391 * 2 1 4 4 H 1.48500 * 109.47278 * 240.00056 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47068 * 120.00110 * 3 2 1 7 7 C 1.40050 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00465 * 197.27298 * 7 2 1 9 9 C 1.41531 * 120.00016 * 17.27275 * 7 2 1 10 10 C 1.41151 * 120.98584 * 23.19741 * 9 7 2 11 11 C 1.37727 * 119.07246 * 179.97438 * 10 9 7 12 12 N 1.31928 * 121.16148 * 0.02562 * 11 10 9 13 13 C 1.32795 * 122.20450 * 359.97438 * 12 11 10 14 14 C 1.48349 * 119.61419 * 179.97438 * 13 12 11 15 15 C 1.39388 * 120.09443 * 0.02562 * 14 13 12 16 16 C 1.37984 * 119.93425 * 180.02562 * 15 14 13 17 17 C 1.38416 * 120.13631 * 0.02562 * 16 15 14 18 18 Cl 1.73604 * 119.89983 * 180.02562 * 17 16 15 19 19 C 1.38645 * 120.20108 * 359.97438 * 17 16 15 20 20 F 1.35098 * 119.96975 * 179.97438 * 19 17 16 21 21 C 1.38214 * 120.05616 * 359.71807 * 19 17 16 22 22 C 1.38904 * 120.76908 * 0.02562 * 13 12 11 23 23 H 0.97005 * 119.99324 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.46012 * 359.97438 * 10 9 7 25 25 H 1.08008 * 119.42053 * 179.71960 * 11 10 9 26 26 H 1.07993 * 120.03155 * 359.97438 * 15 14 13 27 27 H 1.08001 * 119.93135 * 180.02562 * 16 15 14 28 28 H 1.08002 * 120.07039 * 180.28200 * 21 19 17 29 29 H 1.08007 * 120.61816 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2766 2.7464 0.0006 6 1 3.0952 1.6962 1.2125 7 6 2.0075 -1.2129 -0.0005 8 1 3.0510 -1.2343 0.2772 9 6 1.3477 -2.4108 -0.3650 10 6 0.1900 -2.3861 -1.1721 11 6 -0.4203 -3.5754 -1.5035 12 7 0.0582 -4.7295 -1.0797 13 6 1.1434 -4.8091 -0.3186 14 6 1.6312 -6.1377 0.1260 15 6 0.9529 -7.2945 -0.2545 16 6 1.4092 -8.5285 0.1614 17 6 2.5387 -8.6201 0.9562 18 17 3.1077 -10.1759 1.4754 19 6 3.2177 -7.4731 1.3380 20 9 4.3193 -7.5679 2.1142 21 6 2.7715 -6.2333 0.9208 22 6 1.8267 -3.6628 0.0668 23 1 -0.4849 0.8401 -0.0004 24 1 -0.2115 -1.4476 -1.5249 25 1 -1.3091 -3.5628 -2.1170 26 1 0.0708 -7.2249 -0.8735 27 1 0.8838 -9.4248 -0.1338 28 1 3.3028 -5.3400 1.2143 29 1 2.7094 -3.7304 0.6856 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241230744.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:00 Heat of formation + Delta-G solvation = -10.538110 kcal Electronic energy + Delta-G solvation = -17623.912013 eV Core-core repulsion = 14451.419375 eV Total energy + Delta-G solvation = -3172.492638 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.79663 -39.31089 -37.94966 -36.43387 -34.30755 -31.87057 -31.05855 -30.29871 -28.28182 -26.13038 -23.52210 -22.81322 -21.24048 -20.68391 -18.10371 -16.92421 -16.33830 -16.24904 -15.60244 -15.53252 -14.70943 -14.49741 -14.29164 -13.57371 -13.36303 -13.11650 -12.92192 -12.62148 -12.52110 -11.92432 -11.66873 -11.45394 -11.27317 -11.18654 -11.03010 -10.80143 -10.44314 -10.03716 -9.56365 -9.02783 -8.67848 -8.24689 -8.18955 -7.40829 -7.00440 -4.75433 0.91696 1.28749 2.07768 2.60088 2.65588 2.94131 2.96138 3.10308 3.74054 3.80027 4.17800 4.52590 4.73319 4.98145 5.26118 5.45000 5.50218 5.71169 5.73129 5.99059 6.18030 6.24141 6.44096 6.61626 6.72210 6.86574 6.91566 6.95082 7.15597 7.27233 7.67843 7.90646 8.27234 8.55034 8.57393 9.35015 9.91238 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.031823 B = 0.003995 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.665538 B = 7006.893679 C = 7810.231408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.124 3.876 10 C -0.205 4.205 11 C 0.089 3.911 12 N -0.561 5.561 13 C 0.142 3.858 14 C 0.027 3.973 15 C -0.093 4.093 16 C -0.089 4.089 17 C -0.086 4.086 18 Cl -0.067 7.067 19 C 0.106 3.894 20 F -0.132 7.132 21 C -0.138 4.138 22 C -0.245 4.245 23 H 0.286 0.714 24 H 0.129 0.871 25 H 0.125 0.875 26 H 0.149 0.851 27 H 0.139 0.861 28 H 0.149 0.851 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 -9.056 0.495 9.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.483 4.483 8 H 0.102 0.898 9 C 0.116 3.884 10 C -0.227 4.227 11 C -0.064 4.064 12 N -0.276 5.276 13 C 0.009 3.991 14 C 0.026 3.974 15 C -0.112 4.112 16 C -0.107 4.107 17 C -0.114 4.114 18 Cl -0.038 7.038 19 C 0.086 3.914 20 F -0.110 7.110 21 C -0.157 4.157 22 C -0.268 4.268 23 H 0.097 0.903 24 H 0.147 0.853 25 H 0.143 0.857 26 H 0.167 0.833 27 H 0.157 0.843 28 H 0.167 0.833 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.888 -9.806 0.330 9.991 hybrid contribution 0.980 1.512 0.523 1.876 sum 2.868 -8.294 0.853 8.817 Atomic orbital electron populations 1.69745 1.07792 1.30006 1.33074 1.26002 0.94809 1.01742 0.91775 0.86254 0.80143 0.79537 0.80264 1.18555 1.20080 1.18734 1.19607 0.98120 0.90794 1.39760 0.89849 1.17768 0.90843 0.91973 0.87794 1.22321 1.00036 0.98359 1.01978 1.21964 0.98132 0.88265 0.97997 1.67211 1.14171 1.29340 1.16837 1.18907 0.93404 0.89985 0.96824 1.18741 0.92150 0.93240 0.93299 1.21393 1.00506 0.89985 0.99271 1.20900 0.94197 0.99030 0.96615 1.20958 0.99573 0.85525 1.05308 1.98351 1.88878 1.26716 1.89839 1.17204 0.85988 0.92849 0.95349 1.91509 1.50329 1.96930 1.72270 1.21270 0.98232 0.96057 1.00181 1.21880 1.04186 0.92871 1.07911 0.90277 0.85318 0.85701 0.83288 0.84275 0.83306 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.70 10.90 55.55 0.61 -18.10 15 2 C 0.08 1.80 5.20 -17.34 -0.09 1.71 15 3 Si 0.91 17.31 29.59 -169.99 -5.03 12.28 15 4 H -0.26 -4.93 7.11 56.52 0.40 -4.52 15 5 H -0.28 -5.09 7.11 56.52 0.40 -4.69 15 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 7 C -0.45 -11.13 9.12 -37.65 -0.34 -11.47 15 8 H 0.08 1.95 7.90 -52.49 -0.41 1.54 15 9 C 0.12 3.10 5.61 -106.55 -0.60 2.50 15 10 C -0.20 -4.96 8.80 -38.66 -0.34 -5.30 15 11 C 0.09 1.98 11.15 -17.70 -0.20 1.78 15 12 N -0.56 -12.52 9.39 -9.94 -0.09 -12.61 15 13 C 0.14 3.09 6.73 -83.04 -0.56 2.53 15 14 C 0.03 0.49 5.88 -104.90 -0.62 -0.13 15 15 C -0.09 -1.47 9.57 -39.25 -0.38 -1.84 15 16 C -0.09 -1.21 9.81 -39.61 -0.39 -1.59 15 17 C -0.09 -1.24 6.33 -39.37 -0.25 -1.49 15 18 Cl -0.07 -0.86 28.60 -51.86 -1.48 -2.34 15 19 C 0.11 1.67 7.27 -39.44 -0.29 1.38 15 20 F -0.13 -2.07 16.83 2.25 0.04 -2.03 15 21 C -0.14 -2.30 9.39 -39.19 -0.37 -2.67 15 22 C -0.24 -5.63 9.25 -38.35 -0.35 -5.98 15 23 H 0.29 6.20 8.29 -40.82 -0.34 5.86 15 24 H 0.13 3.16 6.16 -52.49 -0.32 2.84 15 25 H 0.13 2.42 8.06 -52.48 -0.42 2.00 15 26 H 0.15 2.32 7.53 -52.49 -0.40 1.93 15 27 H 0.14 1.50 8.06 -52.49 -0.42 1.07 15 28 H 0.15 2.40 6.17 -52.49 -0.32 2.08 15 29 H 0.11 2.23 6.18 -52.48 -0.32 1.90 15 LS Contribution 279.08 15.07 4.21 4.21 Total: -1.00 -25.42 279.08 -8.28 -33.71 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -1.76 Total: 5.47 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -4.77 Total: -20.58 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.51 Total: -30.71 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.48 Total: -2.34 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -25.42 -8.28 -33.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241230744.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.169 kcal (2) G-P(sol) polarization free energy of solvation -25.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds