Wall clock time and date at job start Mon Mar 30 2020 01:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86795 * 120.00391 * 2 1 4 4 H 1.48500 * 109.47278 * 240.00056 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47068 * 120.00110 * 3 2 1 7 7 C 1.40050 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00465 * 197.27298 * 7 2 1 9 9 C 1.41531 * 120.00016 * 17.27275 * 7 2 1 10 10 C 1.41151 * 120.98584 * 23.19741 * 9 7 2 11 11 C 1.37727 * 119.07246 * 179.97438 * 10 9 7 12 12 N 1.31928 * 121.16148 * 0.02562 * 11 10 9 13 13 C 1.32795 * 122.20450 * 359.97438 * 12 11 10 14 14 C 1.48349 * 119.61419 * 179.97438 * 13 12 11 15 15 C 1.39388 * 120.09443 * 0.02562 * 14 13 12 16 16 C 1.37984 * 119.93425 * 180.02562 * 15 14 13 17 17 C 1.38416 * 120.13631 * 0.02562 * 16 15 14 18 18 Cl 1.73604 * 119.89983 * 180.02562 * 17 16 15 19 19 C 1.38645 * 120.20108 * 359.97438 * 17 16 15 20 20 F 1.35098 * 119.96975 * 179.97438 * 19 17 16 21 21 C 1.38214 * 120.05616 * 359.71807 * 19 17 16 22 22 C 1.38904 * 120.76908 * 0.02562 * 13 12 11 23 23 H 0.97005 * 119.99324 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.46012 * 359.97438 * 10 9 7 25 25 H 1.08008 * 119.42053 * 179.71960 * 11 10 9 26 26 H 1.07993 * 120.03155 * 359.97438 * 15 14 13 27 27 H 1.08001 * 119.93135 * 180.02562 * 16 15 14 28 28 H 1.08002 * 120.07039 * 180.28200 * 21 19 17 29 29 H 1.08007 * 120.61816 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2766 2.7464 0.0006 6 1 3.0952 1.6962 1.2125 7 6 2.0075 -1.2129 -0.0005 8 1 3.0510 -1.2343 0.2772 9 6 1.3477 -2.4108 -0.3650 10 6 0.1900 -2.3861 -1.1721 11 6 -0.4203 -3.5754 -1.5035 12 7 0.0582 -4.7295 -1.0797 13 6 1.1434 -4.8091 -0.3186 14 6 1.6312 -6.1377 0.1260 15 6 0.9529 -7.2945 -0.2545 16 6 1.4092 -8.5285 0.1614 17 6 2.5387 -8.6201 0.9562 18 17 3.1077 -10.1759 1.4754 19 6 3.2177 -7.4731 1.3380 20 9 4.3193 -7.5679 2.1142 21 6 2.7715 -6.2333 0.9208 22 6 1.8267 -3.6628 0.0668 23 1 -0.4849 0.8401 -0.0004 24 1 -0.2115 -1.4476 -1.5249 25 1 -1.3091 -3.5628 -2.1170 26 1 0.0708 -7.2249 -0.8735 27 1 0.8838 -9.4248 -0.1338 28 1 3.3028 -5.3400 1.2143 29 1 2.7094 -3.7304 0.6856 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241230744.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:59 Heat of formation + Delta-G solvation = -21.495517 kcal Electronic energy + Delta-G solvation = -17624.387162 eV Core-core repulsion = 14451.419375 eV Total energy + Delta-G solvation = -3172.967787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.04009 -40.79167 -39.45353 -37.58426 -36.05976 -33.32188 -32.78009 -31.64140 -29.81608 -27.92498 -24.96816 -24.23285 -22.84087 -22.25627 -19.66830 -18.40399 -17.66248 -17.55417 -17.19212 -16.84515 -16.30091 -16.05889 -15.93968 -14.88083 -14.78528 -14.63563 -14.30263 -14.23799 -13.92095 -13.28530 -13.22202 -12.97935 -12.76636 -12.53671 -12.51021 -12.00480 -11.95692 -11.80783 -11.27673 -10.38443 -10.05779 -9.97019 -9.95216 -9.01252 -8.74475 -6.60918 -0.43225 0.05360 0.86905 0.92245 1.03017 1.38382 1.49592 1.55578 2.15949 2.40899 2.80094 2.91754 3.38465 3.68332 3.71797 4.05688 4.14867 4.15964 4.45817 4.65706 4.80363 4.84698 4.92341 4.99064 5.05230 5.17711 5.33592 5.40582 5.56842 5.64849 5.86626 6.12503 6.45701 6.73473 6.75417 7.58168 8.19298 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.031823 B = 0.003995 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.665538 B = 7006.893679 C = 7810.231408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.485 4.485 8 H 0.084 0.916 9 C 0.097 3.903 10 C -0.231 4.231 11 C 0.088 3.912 12 N -0.564 5.564 13 C 0.145 3.855 14 C -0.002 4.002 15 C -0.087 4.087 16 C -0.072 4.072 17 C -0.079 4.079 18 Cl -0.046 7.046 19 C 0.099 3.901 20 F -0.132 7.132 21 C -0.137 4.137 22 C -0.268 4.268 23 H 0.294 0.706 24 H 0.119 0.881 25 H 0.153 0.847 26 H 0.153 0.847 27 H 0.176 0.824 28 H 0.146 0.854 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 -10.391 0.597 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.515 4.515 8 H 0.102 0.898 9 C 0.089 3.911 10 C -0.253 4.253 11 C -0.064 4.064 12 N -0.279 5.279 13 C 0.012 3.988 14 C -0.003 4.003 15 C -0.106 4.106 16 C -0.091 4.091 17 C -0.107 4.107 18 Cl -0.017 7.017 19 C 0.079 3.921 20 F -0.111 7.111 21 C -0.157 4.157 22 C -0.291 4.291 23 H 0.105 0.895 24 H 0.136 0.864 25 H 0.171 0.829 26 H 0.170 0.830 27 H 0.194 0.806 28 H 0.164 0.836 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.123 -11.160 0.436 11.368 hybrid contribution 0.914 1.714 0.532 2.014 sum 3.037 -9.446 0.968 9.969 Atomic orbital electron populations 1.69787 1.09120 1.31363 1.33171 1.26846 0.95547 1.04737 0.90767 0.85175 0.78804 0.75164 0.80206 1.18345 1.18919 1.18300 1.19890 0.98457 0.91884 1.41271 0.89806 1.18166 0.91539 0.93058 0.88296 1.22307 1.00854 0.98695 1.03439 1.22382 0.98601 0.87789 0.97609 1.67340 1.14450 1.28988 1.17140 1.19382 0.92580 0.91427 0.95448 1.18641 0.93727 0.92394 0.95579 1.21461 1.00227 0.90017 0.98863 1.21189 0.93470 0.99352 0.95048 1.21129 0.99200 0.86046 1.04274 1.98368 1.88673 1.25094 1.89569 1.17211 0.86248 0.92937 0.95661 1.91508 1.50378 1.96910 1.72300 1.21214 0.97870 0.96668 0.99974 1.22061 1.05137 0.92934 1.08939 0.89455 0.86365 0.82936 0.82980 0.80628 0.83624 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.55 10.90 21.84 0.24 -39.31 15 2 C 0.04 1.84 5.20 85.30 0.44 2.28 15 3 Si 0.99 35.55 29.59 68.60 2.03 37.58 15 4 H -0.26 -9.19 7.11 99.48 0.71 -8.48 15 5 H -0.27 -8.99 7.11 99.48 0.71 -8.28 15 6 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 7 C -0.48 -24.67 9.12 23.52 0.21 -24.45 15 8 H 0.08 4.08 7.90 -2.91 -0.02 4.05 15 9 C 0.10 5.04 5.61 -21.12 -0.12 4.92 15 10 C -0.23 -11.56 8.80 22.86 0.20 -11.36 15 11 C 0.09 3.99 11.15 84.56 0.94 4.93 15 12 N -0.56 -25.19 9.39 -185.38 -1.74 -26.93 15 13 C 0.14 6.38 6.73 41.85 0.28 6.66 15 14 C 0.00 -0.08 5.88 -20.05 -0.12 -0.20 15 15 C -0.09 -2.58 9.57 22.49 0.22 -2.36 15 16 C -0.07 -1.72 9.81 22.25 0.22 -1.51 15 17 C -0.08 -2.05 6.33 22.41 0.14 -1.91 15 18 Cl -0.05 -1.04 28.60 -2.72 -0.08 -1.12 15 19 C 0.10 2.96 7.27 22.36 0.16 3.12 15 20 F -0.13 -3.95 16.83 44.97 0.76 -3.19 15 21 C -0.14 -4.53 9.39 22.53 0.21 -4.32 15 22 C -0.27 -12.70 9.25 23.07 0.21 -12.49 15 23 H 0.29 12.89 8.29 -92.70 -0.77 12.13 15 24 H 0.12 6.06 6.16 -2.91 -0.02 6.04 15 25 H 0.15 5.84 8.06 -2.91 -0.02 5.81 15 26 H 0.15 4.43 7.53 -2.91 -0.02 4.41 15 27 H 0.18 2.93 8.06 -2.91 -0.02 2.91 15 28 H 0.15 4.78 6.17 -2.91 -0.02 4.76 15 29 H 0.12 5.04 6.18 -2.91 -0.02 5.02 15 Total: -1.00 -55.08 279.08 5.42 -49.66 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 1.21 Total: 19.99 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 3.01 Total: -36.68 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -1.50 Total: -66.24 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.76 Total: -3.19 kcal Atomic # 14 Polarization: 35.55 SS G_CDS: 2.03 Total: 37.58 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -55.08 5.42 -49.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241230744.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.166 kcal (2) G-P(sol) polarization free energy of solvation -55.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds