Wall clock time and date at job start Mon Mar 30 2020 01:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48507 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47297 * 300.00132 * 3 2 1 6 6 H 1.48500 * 109.46792 * 60.00280 * 3 2 1 7 7 C 1.40025 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.41372 * 119.99518 * 0.02562 * 7 2 1 10 10 C 1.40722 * 119.76610 * 179.97438 * 9 7 2 11 11 C 1.38250 * 119.18843 * 179.97438 * 10 9 7 12 12 C 1.38720 * 118.69241 * 359.97438 * 11 10 9 13 13 C 1.39871 * 119.46731 * 0.02562 * 12 11 10 14 14 C 1.48296 * 119.61157 * 179.97438 * 13 12 11 15 15 C 1.39417 * 120.10114 * 359.72894 * 14 13 12 16 16 C 1.37968 * 119.93536 * 179.71856 * 15 14 13 17 17 C 1.38426 * 120.13663 * 0.55534 * 16 15 14 18 18 Cl 1.73602 * 119.89791 * 179.74452 * 17 16 15 19 19 C 1.38654 * 120.20506 * 359.71576 * 17 16 15 20 20 F 1.35105 * 119.96900 * 180.02562 * 19 17 16 21 21 C 1.38204 * 120.06559 * 0.02562 * 19 17 16 22 22 N 1.32253 * 120.78136 * 0.24910 * 13 12 11 23 23 H 0.97002 * 120.00361 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.40250 * 0.02562 * 10 9 7 25 25 H 1.08006 * 120.65191 * 179.97438 * 11 10 9 26 26 H 1.08006 * 120.26916 * 179.97438 * 12 11 10 27 27 H 1.08004 * 120.02941 * 359.97438 * 15 14 13 28 28 H 1.08000 * 119.93187 * 180.24906 * 16 15 14 29 29 H 1.07994 * 120.07396 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8827 2.3964 -1.2124 6 1 1.8827 2.3963 1.2126 7 6 2.0075 -1.2126 -0.0005 8 1 3.0874 -1.2126 -0.0001 9 6 1.3006 -2.4369 -0.0016 10 6 2.0091 -3.6528 -0.0027 11 6 1.3057 -4.8430 -0.0032 12 6 -0.0807 -4.7972 -0.0021 13 6 -0.7283 -3.5574 -0.0011 14 6 -2.2103 -3.5048 -0.0005 15 6 -2.9519 -4.6854 -0.0067 16 6 -4.3305 -4.6325 -0.0002 17 6 -4.9791 -3.4095 0.0008 18 17 -6.7141 -3.3502 0.0023 19 6 -4.2473 -2.2318 0.0013 20 9 -4.8852 -1.0409 0.0028 21 6 -2.8660 -2.2750 0.0002 22 7 -0.0345 -2.4315 -0.0061 23 1 -0.4851 0.8400 -0.0004 24 1 3.0891 -3.6560 -0.0023 25 1 1.8255 -5.7897 -0.0045 26 1 -0.6556 -5.7116 -0.0029 27 1 -2.4476 -5.6404 -0.0123 28 1 -4.9049 -5.5470 -0.0009 29 1 -2.2958 -1.3578 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241230864.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:54 Heat of formation + Delta-G solvation = 0.883263 kcal Electronic energy + Delta-G solvation = -18009.818337 eV Core-core repulsion = 14837.820967 eV Total energy + Delta-G solvation = -3171.997370 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.57272 -39.14861 -37.80747 -36.31968 -33.80350 -31.82755 -30.80087 -30.17085 -28.73723 -25.79515 -23.32587 -22.71401 -21.18730 -20.47123 -17.83024 -17.09427 -16.21408 -16.01377 -15.42486 -15.39260 -14.78871 -14.33431 -13.95449 -13.51947 -13.14935 -12.95868 -12.83353 -12.44199 -12.36562 -11.65249 -11.42880 -11.22642 -11.13423 -11.09150 -10.88329 -10.73865 -10.48065 -10.02864 -9.56096 -8.93569 -8.53407 -8.21367 -7.80470 -7.43186 -6.56487 -4.66073 1.04122 1.47574 2.19196 2.62362 2.85903 3.04024 3.07672 3.09782 3.86067 3.92305 4.38392 4.67746 4.98330 5.04597 5.31154 5.64117 5.76402 5.91367 5.94062 6.11517 6.23137 6.36297 6.42143 6.56113 6.59696 6.95353 6.97939 7.13088 7.19710 7.40712 7.55694 7.85346 8.08503 8.51510 8.76134 9.86217 10.16837 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.005602 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.254453 B = 4997.278995 C = 6412.689793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.070 3.930 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.427 4.427 8 H 0.086 0.914 9 C 0.255 3.745 10 C -0.264 4.264 11 C -0.060 4.060 12 C -0.295 4.295 13 C 0.166 3.834 14 C 0.020 3.980 15 C -0.113 4.113 16 C -0.093 4.093 17 C -0.084 4.084 18 Cl -0.070 7.070 19 C 0.099 3.901 20 F -0.132 7.132 21 C -0.106 4.106 22 N -0.466 5.466 23 H 0.274 0.726 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.662 -4.869 0.002 8.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.340 5.340 2 C -0.155 4.155 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.458 4.458 8 H 0.104 0.896 9 C 0.129 3.871 10 C -0.287 4.287 11 C -0.084 4.084 12 C -0.319 4.319 13 C 0.022 3.978 14 C 0.019 3.981 15 C -0.132 4.132 16 C -0.112 4.112 17 C -0.112 4.112 18 Cl -0.041 7.041 19 C 0.078 3.922 20 F -0.111 7.111 21 C -0.125 4.125 22 N -0.179 5.179 23 H 0.085 0.915 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.402 -3.828 -0.004 8.333 hybrid contribution 0.549 0.051 0.004 0.552 sum -6.853 -3.777 0.000 7.825 Atomic orbital electron populations 1.70029 1.07330 1.27969 1.28669 1.26047 0.94916 1.01191 0.93347 0.86237 0.80778 0.80966 0.78687 1.18396 1.19741 1.19747 1.19666 0.94392 0.89230 1.42506 0.89573 1.18513 0.87655 0.92145 0.88750 1.21844 0.98966 0.93517 1.14422 1.20804 0.93784 0.96827 0.96987 1.21178 0.94638 0.96604 1.19430 1.19559 0.90827 0.90444 0.96952 1.18791 0.92755 0.91610 0.94919 1.21304 0.92441 0.98888 1.00560 1.20727 0.94326 0.95519 1.00609 1.20981 0.84482 0.94367 1.11334 1.98342 1.09754 1.98859 1.97189 1.17431 0.90486 0.79644 1.04590 1.91503 1.81925 1.43743 1.93926 1.21768 0.90608 1.01897 0.98243 1.68692 1.07645 1.25069 1.16467 0.91464 0.88023 0.88194 0.88169 0.84249 0.84460 0.80787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.95 11.11 55.55 0.62 -17.34 15 2 C 0.07 1.70 5.50 -17.35 -0.10 1.60 15 3 Si 0.91 17.88 29.56 -169.99 -5.02 12.86 15 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 5 H -0.27 -5.32 7.11 56.52 0.40 -4.91 15 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 7 C -0.43 -10.83 9.14 -37.72 -0.34 -11.17 15 8 H 0.09 2.05 7.85 -52.49 -0.41 1.64 15 9 C 0.25 6.61 6.55 -85.01 -0.56 6.05 15 10 C -0.26 -6.12 9.83 -38.64 -0.38 -6.50 15 11 C -0.06 -1.26 10.15 -39.40 -0.40 -1.66 15 12 C -0.29 -6.14 9.47 -38.79 -0.37 -6.51 15 13 C 0.17 3.80 6.73 -82.94 -0.56 3.24 15 14 C 0.02 0.40 5.88 -104.90 -0.62 -0.21 15 15 C -0.11 -1.78 9.41 -39.24 -0.37 -2.15 15 16 C -0.09 -1.32 9.81 -39.61 -0.39 -1.71 15 17 C -0.08 -1.32 6.33 -39.36 -0.25 -1.57 15 18 Cl -0.07 -0.98 28.60 -51.86 -1.48 -2.46 15 19 C 0.10 1.77 7.27 -39.44 -0.29 1.49 15 20 F -0.13 -2.41 16.83 2.25 0.04 -2.37 15 21 C -0.11 -2.12 9.55 -39.18 -0.37 -2.49 15 22 N -0.47 -12.02 6.91 -7.68 -0.05 -12.08 15 23 H 0.27 6.24 8.29 -40.82 -0.34 5.90 15 24 H 0.10 2.16 8.06 -52.48 -0.42 1.74 15 25 H 0.10 1.75 8.06 -52.48 -0.42 1.33 15 26 H 0.10 1.76 6.17 -52.48 -0.32 1.43 15 27 H 0.14 1.91 6.16 -52.48 -0.32 1.59 15 28 H 0.14 1.51 8.06 -52.49 -0.42 1.09 15 29 H 0.17 3.91 7.18 -52.49 -0.38 3.53 15 LS Contribution 279.77 15.07 4.22 4.22 Total: -1.00 -26.48 279.77 -8.52 -34.99 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -1.84 Total: 3.79 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -4.99 Total: -21.60 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: 0.56 Total: -29.41 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.02 Total: 12.86 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.48 Total: -2.46 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.48 -8.52 -34.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241230864.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.877 kcal (2) G-P(sol) polarization free energy of solvation -26.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds