Wall clock time and date at job start Mon Mar 30 2020 01:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48507 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47297 * 300.00132 * 3 2 1 6 6 H 1.48500 * 109.46792 * 60.00280 * 3 2 1 7 7 C 1.40025 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.41372 * 119.99518 * 0.02562 * 7 2 1 10 10 C 1.40722 * 119.76610 * 179.97438 * 9 7 2 11 11 C 1.38250 * 119.18843 * 179.97438 * 10 9 7 12 12 C 1.38720 * 118.69241 * 359.97438 * 11 10 9 13 13 C 1.39871 * 119.46731 * 0.02562 * 12 11 10 14 14 C 1.48296 * 119.61157 * 179.97438 * 13 12 11 15 15 C 1.39417 * 120.10114 * 359.72894 * 14 13 12 16 16 C 1.37968 * 119.93536 * 179.71856 * 15 14 13 17 17 C 1.38426 * 120.13663 * 0.55534 * 16 15 14 18 18 Cl 1.73602 * 119.89791 * 179.74452 * 17 16 15 19 19 C 1.38654 * 120.20506 * 359.71576 * 17 16 15 20 20 F 1.35105 * 119.96900 * 180.02562 * 19 17 16 21 21 C 1.38204 * 120.06559 * 0.02562 * 19 17 16 22 22 N 1.32253 * 120.78136 * 0.24910 * 13 12 11 23 23 H 0.97002 * 120.00361 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.40250 * 0.02562 * 10 9 7 25 25 H 1.08006 * 120.65191 * 179.97438 * 11 10 9 26 26 H 1.08006 * 120.26916 * 179.97438 * 12 11 10 27 27 H 1.08004 * 120.02941 * 359.97438 * 15 14 13 28 28 H 1.08000 * 119.93187 * 180.24906 * 16 15 14 29 29 H 1.07994 * 120.07396 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8827 2.3964 -1.2124 6 1 1.8827 2.3963 1.2126 7 6 2.0075 -1.2126 -0.0005 8 1 3.0874 -1.2126 -0.0001 9 6 1.3006 -2.4369 -0.0016 10 6 2.0091 -3.6528 -0.0027 11 6 1.3057 -4.8430 -0.0032 12 6 -0.0807 -4.7972 -0.0021 13 6 -0.7283 -3.5574 -0.0011 14 6 -2.2103 -3.5048 -0.0005 15 6 -2.9519 -4.6854 -0.0067 16 6 -4.3305 -4.6325 -0.0002 17 6 -4.9791 -3.4095 0.0008 18 17 -6.7141 -3.3502 0.0023 19 6 -4.2473 -2.2318 0.0013 20 9 -4.8852 -1.0409 0.0028 21 6 -2.8660 -2.2750 0.0002 22 7 -0.0345 -2.4315 -0.0061 23 1 -0.4851 0.8400 -0.0004 24 1 3.0891 -3.6560 -0.0023 25 1 1.8255 -5.7897 -0.0045 26 1 -0.6556 -5.7116 -0.0029 27 1 -2.4476 -5.6404 -0.0123 28 1 -4.9049 -5.5470 -0.0009 29 1 -2.2958 -1.3578 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241230864.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:53 Heat of formation + Delta-G solvation = -11.398647 kcal Electronic energy + Delta-G solvation = -18010.350921 eV Core-core repulsion = 14837.820967 eV Total energy + Delta-G solvation = -3172.529954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.99248 -40.66134 -39.35304 -37.55283 -35.56090 -33.37173 -32.45455 -31.61773 -30.32523 -27.54358 -24.85016 -24.15849 -22.82105 -22.03889 -19.49505 -18.61654 -17.58100 -17.43303 -17.06717 -16.80662 -16.37479 -15.98176 -15.61815 -14.85845 -14.63654 -14.51745 -14.29209 -13.93784 -13.88494 -13.03015 -12.98481 -12.80535 -12.70771 -12.52325 -12.48201 -12.20819 -11.90128 -11.67503 -11.27432 -10.44867 -9.96072 -9.87551 -9.55577 -9.04414 -8.32365 -6.52369 -0.36877 0.13548 0.94682 0.96305 1.19880 1.39885 1.51140 1.54224 2.20916 2.47448 2.92957 3.03788 3.55438 3.71247 3.95671 4.05182 4.24915 4.40247 4.59692 4.70282 4.81777 4.85673 4.91720 4.98230 5.07453 5.24180 5.43030 5.50353 5.68752 5.74637 5.85240 6.15606 6.25408 6.72422 6.93410 8.10964 8.41755 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.005602 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.254453 B = 4997.278995 C = 6412.689793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.027 3.973 3 Si 0.983 3.017 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.466 4.466 8 H 0.089 0.911 9 C 0.221 3.779 10 C -0.287 4.287 11 C -0.058 4.058 12 C -0.286 4.286 13 C 0.143 3.857 14 C -0.006 4.006 15 C -0.095 4.095 16 C -0.073 4.073 17 C -0.078 4.078 18 Cl -0.048 7.048 19 C 0.085 3.915 20 F -0.140 7.140 21 C -0.127 4.127 22 N -0.501 5.501 23 H 0.276 0.724 24 H 0.111 0.889 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.171 0.829 28 H 0.183 0.817 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.807 -7.297 0.000 10.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.498 4.498 8 H 0.107 0.893 9 C 0.095 3.905 10 C -0.310 4.310 11 C -0.082 4.082 12 C -0.309 4.309 13 C 0.000 4.000 14 C -0.008 4.008 15 C -0.114 4.114 16 C -0.091 4.091 17 C -0.106 4.106 18 Cl -0.019 7.019 19 C 0.066 3.934 20 F -0.118 7.118 21 C -0.147 4.147 22 N -0.214 5.214 23 H 0.087 0.913 24 H 0.129 0.871 25 H 0.159 0.841 26 H 0.160 0.840 27 H 0.188 0.812 28 H 0.201 0.799 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.558 -6.282 -0.006 10.616 hybrid contribution 0.745 0.621 0.005 0.970 sum -7.813 -5.661 -0.001 9.648 Atomic orbital electron populations 1.70157 1.08730 1.28793 1.29912 1.26898 0.95685 1.04323 0.92541 0.85136 0.79522 0.76329 0.78608 1.17683 1.19379 1.19385 1.19969 0.94743 0.90306 1.44760 0.89310 1.18992 0.88429 0.93551 0.89561 1.22050 0.99692 0.93801 1.15451 1.21281 0.94142 0.97619 0.95178 1.21664 0.95044 0.97341 1.16866 1.20207 0.92546 0.90734 0.96519 1.18849 0.91559 0.92957 0.97389 1.21575 0.93008 0.98353 0.98499 1.21192 0.93812 0.96346 0.97759 1.21144 0.85676 0.94011 1.09743 1.98356 1.07764 1.98836 1.96983 1.17464 0.89957 0.80376 1.05653 1.91477 1.81831 1.44420 1.94110 1.21500 0.91576 1.01167 1.00438 1.68659 1.07892 1.27151 1.17693 0.91298 0.87079 0.84094 0.83992 0.81218 0.79926 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.09 11.11 21.84 0.24 -39.85 15 2 C 0.03 1.37 5.50 85.29 0.47 1.84 15 3 Si 0.98 38.19 29.56 68.60 2.03 40.22 15 4 H -0.25 -9.42 7.11 99.48 0.71 -8.72 15 5 H -0.27 -10.16 7.11 99.48 0.71 -9.46 15 6 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 7 C -0.47 -24.90 9.14 23.47 0.21 -24.68 15 8 H 0.09 4.44 7.85 -2.91 -0.02 4.42 15 9 C 0.22 11.94 6.55 40.27 0.26 12.21 15 10 C -0.29 -13.46 9.83 22.88 0.22 -13.24 15 11 C -0.06 -2.33 10.15 22.39 0.23 -2.10 15 12 C -0.29 -11.28 9.47 22.78 0.22 -11.06 15 13 C 0.14 6.57 6.73 42.15 0.28 6.85 15 14 C -0.01 -0.25 5.88 -20.05 -0.12 -0.37 15 15 C -0.10 -2.68 9.41 22.49 0.21 -2.47 15 16 C -0.07 -1.75 9.81 22.25 0.22 -1.53 15 17 C -0.08 -2.26 6.33 22.41 0.14 -2.12 15 18 Cl -0.05 -1.21 28.60 -2.72 -0.08 -1.29 15 19 C 0.09 3.08 7.27 22.36 0.16 3.24 15 20 F -0.14 -5.19 16.83 44.97 0.76 -4.43 15 21 C -0.13 -5.28 9.55 22.53 0.22 -5.07 15 22 N -0.50 -27.00 6.91 -178.21 -1.23 -28.23 15 23 H 0.28 13.48 8.29 -92.71 -0.77 12.71 15 24 H 0.11 4.79 8.06 -2.91 -0.02 4.77 15 25 H 0.14 4.39 8.06 -2.91 -0.02 4.36 15 26 H 0.14 4.28 6.17 -2.91 -0.02 4.26 15 27 H 0.17 3.70 6.16 -2.91 -0.02 3.68 15 28 H 0.18 2.82 8.06 -2.91 -0.02 2.79 15 29 H 0.14 6.76 7.18 -2.91 -0.02 6.74 15 Total: -1.00 -61.65 279.77 5.65 -56.00 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.20 Total: 16.09 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 2.73 Total: -38.51 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -0.99 Total: -68.09 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.76 Total: -4.43 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -61.65 5.65 -56.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241230864.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.602 kcal (2) G-P(sol) polarization free energy of solvation -61.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds