Wall clock time and date at job start Mon Mar 30 2020 01:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86798 * 120.00513 * 2 1 4 4 H 1.48497 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47360 * 300.00491 * 3 2 1 6 6 H 1.48507 * 109.46742 * 60.00495 * 3 2 1 7 7 C 1.39945 * 119.99568 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99925 * 197.55693 * 7 2 1 9 9 C 1.41433 * 119.99931 * 17.55424 * 7 2 1 10 10 C 1.40805 * 120.60878 * 203.50981 * 9 7 2 11 11 N 1.31488 * 120.66944 * 179.97438 * 10 9 7 12 12 C 1.31939 * 122.12258 * 359.71789 * 11 10 9 13 13 C 1.39673 * 121.14699 * 0.55132 * 12 11 10 14 14 C 1.48413 * 120.40953 * 179.74315 * 13 12 11 15 15 C 1.39350 * 120.09770 * 179.76568 * 14 13 12 16 16 C 1.37998 * 119.94345 * 179.97438 * 15 14 13 17 17 C 1.38409 * 120.12956 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 119.90248 * 179.97438 * 17 16 15 19 19 C 1.38635 * 120.19323 * 359.97438 * 17 16 15 20 20 F 1.35098 * 119.96891 * 180.02562 * 19 17 16 21 21 C 1.38228 * 120.05910 * 359.97438 * 19 17 16 22 22 C 1.39169 * 119.18018 * 359.46818 * 13 12 11 23 23 H 0.97008 * 119.99554 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.66110 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.43122 * 180.26986 * 12 11 10 26 26 H 1.08001 * 120.03002 * 359.97166 * 15 14 13 27 27 H 1.08000 * 119.93209 * 180.30044 * 16 15 14 28 28 H 1.08000 * 120.06353 * 180.02562 * 21 19 17 29 29 H 1.08005 * 120.95395 * 180.26917 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7023 1.3461 -0.0006 5 1 1.8837 2.3964 -1.2124 6 1 1.8837 2.3963 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0501 -1.2340 0.2816 9 6 1.3500 -2.4081 -0.3705 10 6 1.8302 -3.6563 0.0702 11 7 1.2192 -4.7690 -0.2727 12 6 0.1391 -4.7715 -1.0304 13 6 -0.4042 -3.5806 -1.5178 14 6 -1.6166 -3.6029 -2.3736 15 6 -2.1560 -2.4106 -2.8523 16 6 -3.2831 -2.4351 -3.6483 17 6 -3.8791 -3.6416 -3.9717 18 17 -5.2971 -3.6655 -4.9729 19 6 -3.3470 -4.8311 -3.4985 20 9 -3.9322 -6.0063 -3.8175 21 6 -2.2178 -4.8159 -2.7015 22 6 0.2019 -2.3725 -1.1862 23 1 -0.4850 0.8402 0.0004 24 1 2.7092 -3.7000 0.6961 25 1 -0.3305 -5.7109 -1.2820 26 1 -1.6926 -1.4681 -2.6005 27 1 -3.6982 -1.5112 -4.0232 28 1 -1.8030 -5.7425 -2.3332 29 1 -0.1967 -1.4345 -1.5437 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241231514.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:01 Heat of formation + Delta-G solvation = -11.683243 kcal Electronic energy + Delta-G solvation = -17830.313751 eV Core-core repulsion = 14657.771456 eV Total energy + Delta-G solvation = -3172.542295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.81188 -39.34623 -37.98295 -36.43214 -34.27735 -32.37465 -30.90206 -30.25331 -28.34693 -25.85195 -23.32050 -23.16204 -21.27845 -20.56967 -17.89758 -17.08946 -16.44073 -16.29906 -15.63422 -15.60906 -15.20095 -14.55095 -14.10162 -13.69261 -13.22077 -13.04895 -12.98938 -12.55479 -12.34283 -11.88324 -11.58247 -11.48089 -11.33708 -11.32612 -11.13354 -10.77221 -10.65315 -10.05838 -9.55191 -9.28226 -8.74156 -8.30858 -8.05991 -7.47583 -7.02695 -4.67042 0.91931 1.28210 2.09977 2.46936 2.72580 2.93573 2.98127 3.04300 3.72617 3.80547 4.20006 4.44462 4.78941 5.05081 5.26120 5.39018 5.46814 5.70466 5.83158 6.01543 6.08176 6.22648 6.33073 6.42967 6.57371 6.85416 6.86963 6.93829 7.02669 7.44499 7.64369 7.70321 8.21738 8.47448 8.50431 9.42410 9.87597 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.004867 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.624153 B = 5751.710778 C = 6925.473401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.445 4.445 8 H 0.086 0.914 9 C 0.059 3.941 10 C -0.010 4.010 11 N -0.468 5.468 12 C -0.020 4.020 13 C -0.103 4.103 14 C 0.032 3.968 15 C -0.114 4.114 16 C -0.080 4.080 17 C -0.092 4.092 18 Cl -0.067 7.067 19 C 0.110 3.890 20 F -0.133 7.133 21 C -0.148 4.148 22 C -0.110 4.110 23 H 0.285 0.715 24 H 0.129 0.871 25 H 0.123 0.877 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.006 -0.445 -6.253 8.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.475 4.475 8 H 0.104 0.896 9 C 0.054 3.946 10 C -0.171 4.171 11 N -0.175 5.175 12 C -0.178 4.178 13 C -0.105 4.105 14 C 0.030 3.970 15 C -0.132 4.132 16 C -0.098 4.098 17 C -0.120 4.120 18 Cl -0.039 7.039 19 C 0.090 3.910 20 F -0.111 7.111 21 C -0.166 4.166 22 C -0.135 4.135 23 H 0.096 0.904 24 H 0.147 0.853 25 H 0.141 0.859 26 H 0.163 0.837 27 H 0.157 0.843 28 H 0.164 0.836 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.036 -1.129 -6.046 8.618 hybrid contribution -0.360 1.410 -0.380 1.504 sum -6.396 0.280 -6.426 9.071 Atomic orbital electron populations 1.69774 1.07720 1.29822 1.33982 1.25995 0.94836 1.01769 0.91884 0.86167 0.81054 0.80289 0.78825 1.18133 1.19467 1.19736 1.19622 0.98310 0.90697 1.38824 0.89566 1.18488 0.92124 0.93867 0.90097 1.22617 1.02359 0.87964 1.04182 1.66966 1.07665 1.31986 1.10868 1.21792 0.96775 0.95294 1.03930 1.19347 0.95033 0.95905 1.00253 1.18905 0.93437 0.91538 0.93082 1.21439 0.95362 0.99339 0.97064 1.20858 0.95429 0.95890 0.97657 1.20897 0.93953 0.94260 1.02857 1.98348 1.38629 1.98911 1.67971 1.17254 0.94167 0.80021 0.99583 1.91503 1.83312 1.45095 1.91236 1.21208 0.95169 1.00158 1.00109 1.21863 0.97588 0.95962 0.98056 0.90376 0.85321 0.85921 0.83672 0.84295 0.83613 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.09 10.91 55.55 0.61 -17.49 15 2 C 0.07 1.67 5.18 -17.34 -0.09 1.58 15 3 Si 0.91 16.82 29.59 -169.99 -5.03 11.79 15 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 6 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 7 C -0.45 -10.62 9.08 -37.73 -0.34 -10.96 15 8 H 0.09 1.96 7.90 -52.49 -0.41 1.55 15 9 C 0.06 1.43 5.59 -106.71 -0.60 0.84 15 10 C -0.01 -0.24 10.96 -16.73 -0.18 -0.42 15 11 N -0.47 -10.96 10.32 -12.29 -0.13 -11.09 15 12 C -0.02 -0.44 10.60 -16.97 -0.18 -0.61 15 13 C -0.10 -2.20 5.88 -104.82 -0.62 -2.82 15 14 C 0.03 0.57 5.88 -104.90 -0.62 -0.05 15 15 C -0.11 -1.87 9.43 -39.26 -0.37 -2.24 15 16 C -0.08 -1.13 9.81 -39.61 -0.39 -1.52 15 17 C -0.09 -1.37 6.33 -39.37 -0.25 -1.61 15 18 Cl -0.07 -0.89 28.60 -51.86 -1.48 -2.38 15 19 C 0.11 1.72 7.27 -39.44 -0.29 1.43 15 20 F -0.13 -2.06 16.83 2.25 0.04 -2.02 15 21 C -0.15 -2.41 9.41 -39.19 -0.37 -2.78 15 22 C -0.11 -2.55 8.17 -38.23 -0.31 -2.86 15 23 H 0.29 5.90 8.30 -40.82 -0.34 5.56 15 24 H 0.13 2.81 8.06 -52.49 -0.42 2.38 15 25 H 0.12 2.32 6.20 -52.49 -0.33 2.00 15 26 H 0.15 2.40 6.26 -52.49 -0.33 2.07 15 27 H 0.14 1.62 8.06 -52.49 -0.42 1.20 15 28 H 0.15 2.20 6.21 -52.49 -0.33 1.88 15 29 H 0.14 3.09 4.43 -52.48 -0.23 2.86 15 LS Contribution 276.59 15.07 4.17 4.17 Total: -1.00 -24.93 276.59 -8.04 -32.97 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -1.61 Total: 6.07 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -4.60 Total: -22.03 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: 0.48 Total: -28.58 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.48 Total: -2.38 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -24.93 -8.04 -32.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241231514.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.287 kcal (2) G-P(sol) polarization free energy of solvation -24.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds