Wall clock time and date at job start Mon Mar 30 2020 01:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86798 * 120.00513 * 2 1 4 4 H 1.48497 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47360 * 300.00491 * 3 2 1 6 6 H 1.48507 * 109.46742 * 60.00495 * 3 2 1 7 7 C 1.39945 * 119.99568 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99925 * 197.55693 * 7 2 1 9 9 C 1.41433 * 119.99931 * 17.55424 * 7 2 1 10 10 C 1.40805 * 120.60878 * 203.50981 * 9 7 2 11 11 N 1.31488 * 120.66944 * 179.97438 * 10 9 7 12 12 C 1.31939 * 122.12258 * 359.71789 * 11 10 9 13 13 C 1.39673 * 121.14699 * 0.55132 * 12 11 10 14 14 C 1.48413 * 120.40953 * 179.74315 * 13 12 11 15 15 C 1.39350 * 120.09770 * 179.76568 * 14 13 12 16 16 C 1.37998 * 119.94345 * 179.97438 * 15 14 13 17 17 C 1.38409 * 120.12956 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 119.90248 * 179.97438 * 17 16 15 19 19 C 1.38635 * 120.19323 * 359.97438 * 17 16 15 20 20 F 1.35098 * 119.96891 * 180.02562 * 19 17 16 21 21 C 1.38228 * 120.05910 * 359.97438 * 19 17 16 22 22 C 1.39169 * 119.18018 * 359.46818 * 13 12 11 23 23 H 0.97008 * 119.99554 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.66110 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.43122 * 180.26986 * 12 11 10 26 26 H 1.08001 * 120.03002 * 359.97166 * 15 14 13 27 27 H 1.08000 * 119.93209 * 180.30044 * 16 15 14 28 28 H 1.08000 * 120.06353 * 180.02562 * 21 19 17 29 29 H 1.08005 * 120.95395 * 180.26917 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7023 1.3461 -0.0006 5 1 1.8837 2.3964 -1.2124 6 1 1.8837 2.3963 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0501 -1.2340 0.2816 9 6 1.3500 -2.4081 -0.3705 10 6 1.8302 -3.6563 0.0702 11 7 1.2192 -4.7690 -0.2727 12 6 0.1391 -4.7715 -1.0304 13 6 -0.4042 -3.5806 -1.5178 14 6 -1.6166 -3.6029 -2.3736 15 6 -2.1560 -2.4106 -2.8523 16 6 -3.2831 -2.4351 -3.6483 17 6 -3.8791 -3.6416 -3.9717 18 17 -5.2971 -3.6655 -4.9729 19 6 -3.3470 -4.8311 -3.4985 20 9 -3.9322 -6.0063 -3.8175 21 6 -2.2178 -4.8159 -2.7015 22 6 0.2019 -2.3725 -1.1862 23 1 -0.4850 0.8402 0.0004 24 1 2.7092 -3.7000 0.6961 25 1 -0.3305 -5.7109 -1.2820 26 1 -1.6926 -1.4681 -2.6005 27 1 -3.6982 -1.5112 -4.0232 28 1 -1.8030 -5.7425 -2.3332 29 1 -0.1967 -1.4345 -1.5437 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241231514.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:01 Heat of formation + Delta-G solvation = -22.218253 kcal Electronic energy + Delta-G solvation = -17830.770583 eV Core-core repulsion = 14657.771456 eV Total energy + Delta-G solvation = -3172.999127 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.04384 -40.82574 -39.49541 -37.60051 -36.00134 -33.86636 -32.46915 -31.71420 -29.82451 -27.58974 -24.80498 -24.58258 -22.85344 -22.09788 -19.44958 -18.55645 -17.83760 -17.65653 -17.20997 -16.84218 -16.77484 -16.11266 -15.61260 -14.95229 -14.66067 -14.53281 -14.37787 -13.98180 -13.85885 -13.44902 -13.16321 -13.04473 -12.70573 -12.65002 -12.59548 -12.20199 -11.93802 -11.72233 -11.22129 -10.70480 -10.08276 -9.99662 -9.79932 -9.02929 -8.70810 -6.46906 -0.45138 0.03670 0.84617 0.92351 1.06487 1.42497 1.51357 1.56952 2.19243 2.41894 2.76641 2.95579 3.51640 3.69240 3.70380 4.00071 4.04808 4.23230 4.40421 4.65452 4.68752 4.75285 4.80112 4.98085 5.02976 5.16814 5.26805 5.38165 5.61878 5.76043 5.87629 5.97741 6.44784 6.71141 6.74177 7.64739 8.21650 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.004867 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.624153 B = 5751.710778 C = 6925.473401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.267 1.267 7 C -0.475 4.475 8 H 0.086 0.914 9 C 0.035 3.965 10 C -0.035 4.035 11 N -0.480 5.480 12 C -0.032 4.032 13 C -0.096 4.096 14 C 0.006 3.994 15 C -0.114 4.114 16 C -0.068 4.068 17 C -0.086 4.086 18 Cl -0.048 7.048 19 C 0.105 3.895 20 F -0.131 7.131 21 C -0.142 4.142 22 C -0.130 4.130 23 H 0.295 0.705 24 H 0.136 0.864 25 H 0.150 0.850 26 H 0.140 0.860 27 H 0.170 0.830 28 H 0.155 0.845 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 0.365 -7.374 10.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.177 4.177 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.192 1.192 7 C -0.504 4.504 8 H 0.104 0.896 9 C 0.030 3.970 10 C -0.196 4.196 11 N -0.187 5.187 12 C -0.190 4.190 13 C -0.098 4.098 14 C 0.005 3.995 15 C -0.132 4.132 16 C -0.087 4.087 17 C -0.114 4.114 18 Cl -0.019 7.019 19 C 0.085 3.915 20 F -0.110 7.110 21 C -0.160 4.160 22 C -0.155 4.155 23 H 0.106 0.894 24 H 0.153 0.847 25 H 0.167 0.833 26 H 0.158 0.842 27 H 0.187 0.813 28 H 0.173 0.827 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.331 -0.337 -7.168 10.259 hybrid contribution -0.132 1.087 -0.119 1.102 sum -7.464 0.750 -7.286 10.458 Atomic orbital electron populations 1.69797 1.08891 1.31257 1.33688 1.26763 0.95556 1.04477 0.90916 0.85112 0.79465 0.75905 0.79075 1.18208 1.18571 1.19185 1.19863 0.98610 0.91638 1.40267 0.89585 1.18815 0.92973 0.94449 0.90713 1.22760 1.03259 0.88155 1.05383 1.66968 1.08393 1.31958 1.11408 1.22283 0.96486 0.96674 1.03524 1.19570 0.95626 0.95052 0.99568 1.18776 0.93278 0.93005 0.94465 1.21450 0.95963 0.98544 0.97232 1.21083 0.94225 0.96977 0.96372 1.21056 0.94160 0.94070 1.02086 1.98364 1.37401 1.98875 1.67247 1.17259 0.94105 0.80438 0.99695 1.91511 1.83196 1.45056 1.91190 1.21225 0.95182 0.99854 0.99783 1.21924 0.98010 0.96724 0.98875 0.89395 0.84682 0.83308 0.84230 0.81274 0.82727 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.38 10.91 21.83 0.24 -37.14 15 2 C 0.04 1.80 5.18 85.26 0.44 2.24 15 3 Si 0.98 34.09 29.59 68.60 2.03 36.12 15 4 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 5 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 6 H -0.27 -8.98 7.11 99.48 0.71 -8.27 15 7 C -0.47 -23.25 9.08 23.47 0.21 -23.03 15 8 H 0.09 4.04 7.90 -2.91 -0.02 4.02 15 9 C 0.03 1.76 5.59 -21.22 -0.12 1.64 15 10 C -0.04 -1.72 10.96 85.37 0.94 -0.79 15 11 N -0.48 -22.90 10.32 -192.78 -1.99 -24.89 15 12 C -0.03 -1.38 10.60 85.02 0.90 -0.48 15 13 C -0.10 -4.13 5.88 -20.00 -0.12 -4.25 15 14 C 0.01 0.21 5.88 -20.04 -0.12 0.09 15 15 C -0.11 -3.58 9.43 22.48 0.21 -3.37 15 16 C -0.07 -1.76 9.81 22.25 0.22 -1.54 15 17 C -0.09 -2.31 6.33 22.41 0.14 -2.17 15 18 Cl -0.05 -1.12 28.60 -2.72 -0.08 -1.20 15 19 C 0.11 3.06 7.27 22.36 0.16 3.22 15 20 F -0.13 -3.75 16.83 44.97 0.76 -3.00 15 21 C -0.14 -4.42 9.41 22.52 0.21 -4.21 15 22 C -0.13 -6.19 8.17 23.14 0.19 -6.00 15 23 H 0.29 12.07 8.30 -92.70 -0.77 11.30 15 24 H 0.14 6.17 8.06 -2.91 -0.02 6.14 15 25 H 0.15 5.51 6.20 -2.91 -0.02 5.49 15 26 H 0.14 4.56 6.26 -2.91 -0.02 4.54 15 27 H 0.17 3.32 8.06 -2.91 -0.02 3.30 15 28 H 0.16 4.43 6.21 -2.91 -0.02 4.41 15 29 H 0.13 6.26 4.43 -2.91 -0.01 6.24 15 Total: -1.00 -53.16 276.59 5.45 -47.71 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 1.21 Total: 21.05 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 3.27 Total: -38.65 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -1.75 Total: -62.03 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.76 Total: -3.00 kcal Atomic # 14 Polarization: 34.09 SS G_CDS: 2.03 Total: 36.12 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -53.16 5.45 -47.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241231514.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.492 kcal (2) G-P(sol) polarization free energy of solvation -53.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds