Wall clock time and date at job start Mon Mar 30 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30711 * 1 3 3 Si 1.86798 * 120.00358 * 2 1 4 4 H 1.48502 * 109.47466 * 240.00269 * 3 2 1 5 5 H 1.48497 * 109.46930 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47498 * 119.99559 * 3 2 1 7 7 C 1.40103 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00221 * 179.97438 * 7 2 1 9 9 C 1.40978 * 119.99523 * 0.02562 * 7 2 1 10 10 C 1.40884 * 119.67686 * 179.97438 * 9 7 2 11 11 C 1.36676 * 119.25447 * 179.97438 * 10 9 7 12 12 C 1.40284 * 118.60195 * 0.02562 * 11 10 9 13 13 C 1.47941 * 120.34279 * 179.97438 * 12 11 10 14 14 C 1.39676 * 120.12221 * 359.72633 * 13 12 11 15 15 C 1.37884 * 119.91231 * 180.27321 * 14 13 12 16 16 C 1.38510 * 120.16066 * 0.02562 * 15 14 13 17 17 Cl 1.73596 * 119.87547 * 180.02562 * 16 15 14 18 18 C 1.38728 * 120.24500 * 359.97438 * 16 15 14 19 19 F 1.35098 * 119.95837 * 180.02562 * 18 16 15 20 20 C 1.38118 * 120.08233 * 0.02562 * 18 16 15 21 21 C 1.40098 * 119.30763 * 0.27417 * 12 11 10 22 22 N 1.31196 * 120.68841 * 359.45022 * 21 12 11 23 23 H 0.96998 * 119.99994 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.37373 * 0.02583 * 10 9 7 25 25 H 1.07993 * 120.69794 * 180.02562 * 11 10 9 26 26 H 1.07995 * 120.04188 * 0.25691 * 14 13 12 27 27 H 1.08003 * 119.92246 * 180.02562 * 15 14 13 28 28 H 1.07998 * 120.08181 * 179.97438 * 20 18 16 29 29 H 1.08003 * 119.65545 * 179.69651 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0949 1.6964 -1.2125 5 1 1.2763 2.7464 -0.0006 6 1 3.0949 1.6964 1.2125 7 6 2.0077 -1.2133 0.0005 8 1 3.0876 -1.2133 0.0001 9 6 1.3027 -2.4342 0.0005 10 6 2.0139 -3.6503 0.0005 11 6 1.3218 -4.8288 0.0011 12 6 -0.0803 -4.7842 0.0011 13 6 -0.8679 -6.0365 0.0011 14 6 -0.2184 -7.2731 -0.0047 15 6 -0.9568 -8.4376 -0.0104 16 6 -2.3408 -8.3840 -0.0109 17 17 -3.2631 -9.8547 -0.0174 18 6 -2.9927 -7.1595 -0.0052 19 9 -4.3430 -7.1140 -0.0053 20 6 -2.2631 -5.9867 0.0005 21 6 -0.7269 -3.5414 -0.0054 22 7 -0.0351 -2.4267 -0.0005 23 1 -0.4850 0.8400 0.0004 24 1 3.0939 -3.6513 0.0010 25 1 1.8433 -5.7745 0.0015 26 1 0.8606 -7.3170 -0.0050 27 1 -0.4547 -9.3938 -0.0144 28 1 -2.7706 -5.0334 0.0045 29 1 -1.8061 -3.5005 -0.0104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241231838.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:03 Heat of formation + Delta-G solvation = -14.970810 kcal Electronic energy + Delta-G solvation = -17571.007627 eV Core-core repulsion = 14398.322773 eV Total energy + Delta-G solvation = -3172.684854 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.98557 -40.65193 -39.36995 -37.49171 -35.70065 -33.39014 -32.71156 -31.53905 -30.33082 -27.42300 -24.75146 -24.21416 -22.76764 -22.10371 -19.52617 -18.74452 -17.81781 -17.40282 -17.16377 -16.77256 -16.21418 -15.97423 -15.72157 -14.84934 -14.52498 -14.41454 -14.22553 -13.94283 -13.88474 -13.46952 -12.96912 -12.81391 -12.66128 -12.52561 -12.51479 -12.12164 -11.84502 -11.82284 -11.29492 -10.47023 -10.10192 -9.87540 -9.56884 -8.96944 -8.41123 -6.55991 -0.26436 0.16599 0.95982 1.06180 1.21156 1.40520 1.53481 1.54899 2.17831 2.51894 2.90570 3.09066 3.66381 3.90004 3.91514 4.08112 4.14160 4.31032 4.36615 4.69398 4.76725 4.85364 4.92739 5.04617 5.08017 5.14241 5.32410 5.45108 5.65941 5.80198 5.91142 6.04477 6.18251 6.59784 6.84227 8.08269 8.30669 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.046803 B = 0.003601 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.112806 B = 7773.684334 C = 8361.940309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.018 3.982 3 Si 0.992 3.008 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.437 4.437 8 H 0.099 0.901 9 C 0.217 3.783 10 C -0.286 4.286 11 C -0.029 4.029 12 C -0.277 4.277 13 C 0.048 3.952 14 C -0.138 4.138 15 C -0.059 4.059 16 C -0.113 4.113 17 Cl -0.059 7.059 18 C 0.110 3.890 19 F -0.139 7.139 20 C -0.180 4.180 21 C 0.138 3.862 22 N -0.525 5.525 23 H 0.284 0.716 24 H 0.119 0.881 25 H 0.142 0.858 26 H 0.156 0.844 27 H 0.170 0.830 28 H 0.137 0.863 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -10.895 -0.023 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.206 4.206 3 Si 0.811 3.189 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.467 4.467 8 H 0.118 0.882 9 C 0.094 3.906 10 C -0.308 4.308 11 C -0.052 4.052 12 C -0.282 4.282 13 C 0.046 3.954 14 C -0.156 4.156 15 C -0.077 4.077 16 C -0.141 4.141 17 Cl -0.030 7.030 18 C 0.090 3.910 19 F -0.117 7.117 20 C -0.199 4.199 21 C -0.030 4.030 22 N -0.237 5.237 23 H 0.095 0.905 24 H 0.137 0.863 25 H 0.160 0.840 26 H 0.173 0.827 27 H 0.187 0.813 28 H 0.155 0.845 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.108 -10.026 -0.022 10.087 hybrid contribution 0.015 -0.021 0.001 0.026 sum -1.094 -10.047 -0.021 10.107 Atomic orbital electron populations 1.70196 1.09162 1.29891 1.26787 1.27172 0.95791 1.05055 0.92600 0.85108 0.78596 0.74824 0.80365 1.17977 1.19343 1.17968 1.20203 0.95462 0.90403 1.40608 0.88248 1.19176 0.88946 0.93660 0.88787 1.21665 0.99970 0.93395 1.15773 1.21045 0.92723 0.97926 0.93461 1.19164 0.93828 0.92365 1.22875 1.18717 0.91303 0.93170 0.92178 1.21436 1.01515 0.90026 1.02667 1.21084 0.89830 1.00406 0.96407 1.20993 0.93530 0.85911 1.13674 1.98345 1.73887 1.33524 1.97253 1.17356 0.76833 0.93235 1.03610 1.91482 1.29020 1.97291 1.93950 1.21153 0.94234 0.97138 1.07343 1.23118 0.99421 0.88447 0.92023 1.68754 1.07855 1.27926 1.19188 0.90492 0.86319 0.84033 0.82694 0.81277 0.84484 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.09 11.44 21.85 0.25 -37.84 15 2 C 0.02 0.85 5.50 85.31 0.47 1.31 15 3 Si 0.99 35.35 29.56 68.60 2.03 37.38 15 4 H -0.26 -8.76 7.11 99.48 0.71 -8.05 15 5 H -0.27 -9.22 7.11 99.48 0.71 -8.51 15 6 H -0.26 -8.75 7.11 99.48 0.71 -8.05 15 7 C -0.44 -22.12 9.12 23.39 0.21 -21.91 15 8 H 0.10 4.57 7.85 -2.91 -0.02 4.54 15 9 C 0.22 11.34 6.55 40.17 0.26 11.60 15 10 C -0.29 -12.80 9.76 22.55 0.22 -12.58 15 11 C -0.03 -1.13 9.46 22.40 0.21 -0.91 15 12 C -0.28 -11.23 5.92 -19.76 -0.12 -11.35 15 13 C 0.05 1.60 5.88 -20.03 -0.12 1.49 15 14 C -0.14 -3.69 9.44 22.53 0.21 -3.48 15 15 C -0.06 -1.38 9.81 22.25 0.22 -1.16 15 16 C -0.11 -3.07 6.33 22.45 0.14 -2.92 15 17 Cl -0.06 -1.42 28.60 -2.72 -0.08 -1.50 15 18 C 0.11 3.38 7.27 22.36 0.16 3.54 15 19 F -0.14 -4.37 16.83 44.97 0.76 -3.62 15 20 C -0.18 -5.92 9.42 22.57 0.21 -5.71 15 21 C 0.14 6.42 10.60 85.24 0.90 7.32 15 22 N -0.52 -28.14 7.83 -188.22 -1.47 -29.61 15 23 H 0.28 13.18 8.29 -92.71 -0.77 12.41 15 24 H 0.12 4.77 8.06 -2.91 -0.02 4.74 15 25 H 0.14 4.27 6.29 -2.91 -0.02 4.25 15 26 H 0.16 3.44 6.25 -2.91 -0.02 3.42 15 27 H 0.17 2.79 8.06 -2.91 -0.02 2.77 15 28 H 0.14 4.52 6.22 -2.91 -0.02 4.50 15 29 H 0.13 5.63 6.21 -2.91 -0.02 5.61 15 Total: -1.00 -57.98 277.86 5.69 -52.29 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.21 Total: 17.64 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 2.99 Total: -34.74 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -1.22 Total: -67.46 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.76 Total: -3.62 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.38 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -57.98 5.69 -52.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241231838.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.319 kcal (2) G-P(sol) polarization free energy of solvation -57.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds