Wall clock time and date at job start Mon Mar 30 2020 01:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86794 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47220 * 269.99597 * 3 2 1 5 5 H 1.48499 * 109.47613 * 29.99796 * 3 2 1 6 6 H 1.48507 * 109.47371 * 150.00170 * 3 2 1 7 7 C 1.40170 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 164.80187 * 7 2 1 9 9 C 1.40920 * 120.00205 * 344.79774 * 7 2 1 10 10 C 1.41124 * 121.10914 * 334.73688 * 9 7 2 11 11 C 1.36475 * 119.10442 * 180.29981 * 10 9 7 12 12 N 1.32221 * 121.51465 * 359.68977 * 11 10 9 13 13 C 1.31664 * 122.50250 * 0.02562 * 12 11 10 14 14 C 1.39319 * 120.66042 * 0.02562 * 13 12 11 15 15 C 1.47823 * 120.78644 * 179.97438 * 14 13 12 16 16 C 1.39721 * 120.12650 * 310.00562 * 15 14 13 17 17 C 1.37873 * 119.90984 * 179.97438 * 16 15 14 18 18 C 1.38506 * 120.16534 * 359.97438 * 17 16 15 19 19 Cl 1.73604 * 119.87522 * 179.97438 * 18 17 16 20 20 C 1.38738 * 120.25732 * 359.97438 * 18 17 16 21 21 F 1.35092 * 119.96101 * 180.02562 * 20 18 17 22 22 C 1.38117 * 120.08335 * 0.29232 * 20 18 17 23 23 H 0.97009 * 119.99947 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.44650 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.24273 * 179.72313 * 11 10 9 26 26 H 1.07993 * 119.66708 * 179.97438 * 13 12 11 27 27 H 1.07999 * 120.04068 * 359.97402 * 16 15 14 28 28 H 1.07995 * 119.91924 * 179.97438 * 17 16 15 29 29 H 1.07997 * 120.07821 * 179.72232 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4884 2.0464 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5385 1.4402 0.7000 7 6 2.0077 -1.2139 0.0005 8 1 3.0594 -1.2304 -0.2446 9 6 1.3401 -2.4128 0.3211 10 6 0.1820 -2.4094 1.1276 11 6 -0.4285 -3.5950 1.4176 12 7 0.0368 -4.7432 0.9556 13 6 1.1083 -4.8172 0.1941 14 6 1.8082 -3.6662 -0.1614 15 6 3.0119 -3.7462 -1.0158 16 6 4.0349 -4.6452 -0.7036 17 6 5.1554 -4.7165 -1.5039 18 6 5.2690 -3.8995 -2.6166 19 17 6.6835 -3.9951 -3.6186 20 6 4.2569 -3.0052 -2.9335 21 9 4.3738 -2.2116 -4.0205 22 6 3.1324 -2.9212 -2.1360 23 1 -0.4850 0.8401 0.0004 24 1 -0.2128 -1.4815 1.5144 25 1 -1.3123 -3.5954 2.0383 26 1 1.4486 -5.7799 -0.1577 27 1 3.9480 -5.2834 0.1633 28 1 5.9464 -5.4110 -1.2625 29 1 2.3466 -2.2218 -2.3803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241232463.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:16 Heat of formation + Delta-G solvation = -13.146360 kcal Electronic energy + Delta-G solvation = -18239.229419 eV Core-core repulsion = 15066.623679 eV Total energy + Delta-G solvation = -3172.605740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.54249 -39.14877 -37.85793 -36.22981 -34.39884 -32.11105 -30.47920 -30.17249 -28.30758 -26.19503 -23.05486 -22.60057 -21.45832 -20.47162 -17.86077 -17.11865 -16.13059 -16.06498 -15.69969 -15.32625 -14.66917 -14.44625 -14.30400 -13.52701 -13.15004 -12.83662 -12.70930 -12.59274 -12.37251 -11.72494 -11.62207 -11.51425 -11.32342 -11.21190 -10.93808 -10.65104 -10.47109 -9.99324 -9.63318 -8.71530 -8.47405 -8.18907 -8.03249 -7.55125 -7.06985 -4.82331 1.27945 1.55811 2.30364 2.54144 2.66558 2.91606 2.95646 3.10003 3.69484 3.95613 4.43189 4.47330 5.08859 5.31282 5.42146 5.52172 5.67270 5.74747 6.03237 6.18263 6.25133 6.43297 6.50728 6.64143 6.70996 6.83338 7.04584 7.15610 7.17470 7.30904 7.62862 7.86770 8.21501 8.46996 8.50035 9.43229 9.79956 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.007105 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.418242 B = 3939.963983 C = 5374.362368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.439 4.439 8 H 0.087 0.913 9 C 0.148 3.852 10 C -0.206 4.206 11 C 0.084 3.916 12 N -0.577 5.577 13 C 0.139 3.861 14 C -0.251 4.251 15 C 0.064 3.936 16 C -0.131 4.131 17 C -0.084 4.084 18 C -0.099 4.099 19 Cl -0.075 7.075 20 C 0.105 3.895 21 F -0.136 7.136 22 C -0.127 4.127 23 H 0.288 0.712 24 H 0.128 0.872 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.741 -2.563 -2.365 7.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.469 4.469 8 H 0.105 0.895 9 C 0.140 3.860 10 C -0.228 4.228 11 C -0.063 4.063 12 N -0.291 5.291 13 C -0.020 4.020 14 C -0.256 4.256 15 C 0.062 3.938 16 C -0.150 4.150 17 C -0.102 4.102 18 C -0.127 4.127 19 Cl -0.047 7.047 20 C 0.085 3.915 21 F -0.114 7.114 22 C -0.146 4.146 23 H 0.099 0.901 24 H 0.146 0.854 25 H 0.138 0.862 26 H 0.142 0.858 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.146 -3.121 -2.237 7.247 hybrid contribution 0.894 1.823 -0.556 2.105 sum 7.039 -1.299 -2.794 7.684 Atomic orbital electron populations 1.69727 1.07830 1.30228 1.31833 1.26048 0.94802 1.01819 0.91716 0.86260 0.80787 0.79876 0.79871 1.18894 1.19667 1.18014 1.19660 0.97626 0.90480 1.39108 0.89459 1.17711 0.90118 0.91048 0.87104 1.21944 0.99911 0.98392 1.02542 1.21764 0.98061 0.88793 0.97646 1.67352 1.15781 1.29144 1.16831 1.22100 0.91128 0.95649 0.93140 1.19401 1.01242 0.95422 1.09550 1.18621 0.92816 0.91106 0.91223 1.21345 0.92784 1.00677 1.00162 1.20720 0.98710 0.98099 0.92717 1.20856 0.90398 1.03450 0.97974 1.98331 1.39452 1.97862 1.69041 1.17372 0.95319 0.92334 0.86485 1.91485 1.96141 1.71958 1.51846 1.21452 0.96896 1.01697 0.94530 0.90081 0.85442 0.86235 0.85846 0.84930 0.84857 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.88 10.92 55.56 0.61 -17.27 15 2 C 0.08 1.76 5.22 -17.31 -0.09 1.67 15 3 Si 0.91 17.18 29.59 -169.99 -5.03 12.15 15 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 6 H -0.26 -4.89 7.11 56.52 0.40 -4.48 15 7 C -0.44 -10.34 7.30 -37.84 -0.28 -10.61 15 8 H 0.09 2.03 6.71 -52.49 -0.35 1.67 15 9 C 0.15 3.54 5.59 -106.25 -0.59 2.95 15 10 C -0.21 -4.89 8.72 -39.12 -0.34 -5.23 15 11 C 0.08 1.89 11.09 -18.02 -0.20 1.69 15 12 N -0.58 -13.08 10.32 -13.37 -0.14 -13.22 15 13 C 0.14 2.96 10.71 -17.22 -0.18 2.78 15 14 C -0.25 -5.47 5.54 -104.04 -0.58 -6.05 15 15 C 0.06 1.22 5.00 -104.90 -0.52 0.70 15 16 C -0.13 -2.12 9.54 -39.16 -0.37 -2.49 15 17 C -0.08 -1.23 9.81 -39.62 -0.39 -1.62 15 18 C -0.10 -1.60 6.33 -39.30 -0.25 -1.85 15 19 Cl -0.08 -1.09 28.60 -51.86 -1.48 -2.58 15 20 C 0.10 1.88 7.27 -39.44 -0.29 1.60 15 21 F -0.14 -2.46 16.82 2.25 0.04 -2.43 15 22 C -0.13 -2.44 8.05 -39.10 -0.31 -2.76 15 23 H 0.29 6.04 8.29 -40.82 -0.34 5.70 15 24 H 0.13 3.07 6.24 -52.49 -0.33 2.74 15 25 H 0.12 2.37 8.06 -52.49 -0.42 1.94 15 26 H 0.12 2.27 8.05 -52.49 -0.42 1.85 15 27 H 0.13 1.92 8.05 -52.49 -0.42 1.49 15 28 H 0.13 1.58 8.06 -52.49 -0.42 1.15 15 29 H 0.15 3.07 7.37 -52.49 -0.39 2.69 15 LS Contribution 278.56 15.07 4.20 4.20 Total: -1.00 -24.73 278.56 -8.10 -32.83 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -1.89 Total: 5.55 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -4.40 Total: -19.24 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.47 Total: -30.49 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.48 Total: -2.58 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -24.73 -8.10 -32.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241232463.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.680 kcal (2) G-P(sol) polarization free energy of solvation -24.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds