Wall clock time and date at job start Mon Mar 30 2020 01:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86801 * 120.00410 * 2 1 4 4 H 1.48503 * 109.46889 * 264.98770 * 3 2 1 5 5 H 1.48507 * 109.46966 * 24.98089 * 3 2 1 6 6 H 1.48492 * 109.47470 * 144.98556 * 3 2 1 7 7 C 1.40017 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00033 * 188.78223 * 7 2 1 9 9 C 1.41368 * 120.00262 * 8.78245 * 7 2 1 10 10 C 1.40711 * 119.77230 * 190.07708 * 9 7 2 11 11 C 1.38254 * 119.19600 * 179.97438 * 10 9 7 12 12 C 1.38715 * 118.69330 * 0.02562 * 11 10 9 13 13 C 1.39897 * 119.46284 * 359.97438 * 12 11 10 14 14 C 1.48254 * 119.61329 * 179.97438 * 13 12 11 15 15 C 1.39400 * 120.13127 * 354.25028 * 14 13 12 16 16 C 1.38071 * 119.88483 * 179.97438 * 15 14 13 17 17 Cl 1.73599 * 119.92216 * 179.97438 * 16 15 14 18 18 C 1.38498 * 120.15837 * 0.02562 * 16 15 14 19 19 C 1.38229 * 120.27096 * 359.95608 * 18 16 15 20 20 C 1.38295 * 120.11340 * 0.02562 * 19 18 16 21 21 F 1.35095 * 120.08039 * 179.97438 * 20 19 18 22 22 N 1.32265 * 120.78255 * 0.25644 * 13 12 11 23 23 H 0.97007 * 119.99844 * 0.02562 * 1 2 3 24 24 H 1.08002 * 120.39827 * 359.97438 * 10 9 7 25 25 H 1.08000 * 120.65606 * 179.97438 * 11 10 9 26 26 H 1.08000 * 120.27259 * 179.97438 * 12 11 10 27 27 H 1.07996 * 120.05749 * 0.24348 * 15 14 13 28 28 H 1.07994 * 119.86818 * 179.97438 * 18 16 15 29 29 H 1.08000 * 119.94935 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.5950 1.9851 -1.3948 5 1 1.3900 2.6810 0.5913 6 1 3.4820 1.4730 0.8033 7 6 2.0075 -1.2126 0.0005 8 1 3.0781 -1.2180 0.1434 9 6 1.3131 -2.4298 -0.1858 10 6 1.9770 -3.6524 0.0253 11 6 1.2863 -4.8356 -0.1599 12 6 -0.0435 -4.7765 -0.5499 13 6 -0.6489 -3.5303 -0.7443 14 6 -2.0699 -3.4633 -1.1616 15 6 -2.7631 -4.6314 -1.4748 16 6 -4.0865 -4.5631 -1.8624 17 17 -4.9505 -6.0172 -2.2532 18 6 -4.7261 -3.3372 -1.9412 19 6 -4.0450 -2.1748 -1.6318 20 6 -2.7193 -2.2302 -1.2419 21 9 -2.0541 -1.0937 -0.9402 22 7 0.0331 -2.4112 -0.5654 23 1 -0.4850 0.8401 -0.0004 24 1 3.0135 -3.6661 0.3284 25 1 1.7728 -5.7873 -0.0048 26 1 -0.6071 -5.6851 -0.7022 27 1 -2.2671 -5.5886 -1.4101 28 1 -5.7612 -3.2891 -2.2453 29 1 -4.5489 -1.2216 -1.6946 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241328477.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:55 Heat of formation + Delta-G solvation = -2.594180 kcal Electronic energy + Delta-G solvation = -18389.616567 eV Core-core repulsion = 15217.468404 eV Total energy + Delta-G solvation = -3172.148163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.29898 -40.52930 -39.41054 -37.35822 -35.56313 -33.54132 -32.47815 -31.27092 -30.35586 -27.50760 -24.93753 -24.08033 -22.59287 -22.05994 -19.37501 -18.56621 -17.59942 -17.14601 -16.78319 -16.45462 -16.21288 -15.77039 -15.72686 -14.90854 -14.47550 -14.35049 -14.06662 -13.98546 -13.63423 -13.40736 -12.96567 -12.78033 -12.65752 -12.24719 -12.21554 -12.14269 -11.87455 -11.71338 -11.21922 -10.61236 -10.01083 -9.60825 -9.47592 -8.99896 -8.33008 -6.47396 -0.23604 0.09724 0.99832 1.09084 1.21256 1.40129 1.52215 1.53796 2.23248 2.48900 2.92409 3.44390 3.53938 3.77790 3.94349 4.06921 4.20116 4.32664 4.56758 4.67837 4.78272 4.89450 4.97257 5.08811 5.13579 5.15281 5.33338 5.43701 5.66328 5.79373 5.86591 6.13679 6.26615 6.74677 6.93973 8.09287 8.45436 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.005722 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.448295 B = 4892.114087 C = 5978.715753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.027 3.973 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.471 4.471 8 H 0.087 0.913 9 C 0.224 3.776 10 C -0.295 4.295 11 C -0.055 4.055 12 C -0.299 4.299 13 C 0.147 3.853 14 C -0.081 4.081 15 C -0.069 4.069 16 C -0.057 4.057 17 Cl -0.054 7.054 18 C -0.068 4.068 19 C -0.153 4.153 20 C 0.108 3.892 21 F -0.104 7.104 22 N -0.496 5.496 23 H 0.279 0.721 24 H 0.111 0.889 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.151 0.849 28 H 0.176 0.824 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.564 -4.969 -3.528 11.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.197 4.197 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.502 4.502 8 H 0.106 0.894 9 C 0.099 3.901 10 C -0.317 4.317 11 C -0.079 4.079 12 C -0.322 4.322 13 C 0.003 3.997 14 C -0.083 4.083 15 C -0.089 4.089 16 C -0.084 4.084 17 Cl -0.025 7.025 18 C -0.087 4.087 19 C -0.172 4.172 20 C 0.087 3.913 21 F -0.081 7.081 22 N -0.209 5.209 23 H 0.089 0.911 24 H 0.129 0.871 25 H 0.156 0.844 26 H 0.149 0.851 27 H 0.169 0.831 28 H 0.193 0.807 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.156 -4.089 -3.644 11.539 hybrid contribution 1.192 -0.059 0.319 1.236 sum -8.964 -4.148 -3.324 10.422 Atomic orbital electron populations 1.70170 1.08396 1.29149 1.27869 1.26896 0.95756 1.04172 0.92845 0.85228 0.79027 0.76135 0.79331 1.19193 1.19301 1.17968 1.19877 0.95520 0.90713 1.44057 0.89443 1.18984 0.88558 0.93475 0.89097 1.22015 1.01144 0.93810 1.14765 1.21220 0.93973 0.97679 0.95058 1.21545 0.96954 0.97025 1.16677 1.20103 0.92759 0.90783 0.96032 1.18966 0.92885 0.92938 1.03483 1.21038 0.92703 0.97918 0.97190 1.20737 0.92667 0.88928 1.06019 1.98354 1.75929 1.35615 1.92600 1.21217 1.01509 0.88651 0.97276 1.21343 0.91632 1.01388 1.02808 1.18565 0.91528 0.83044 0.98146 1.91778 1.80286 1.46847 1.89223 1.68732 1.08267 1.27144 1.16800 0.91063 0.87135 0.84383 0.85086 0.83101 0.80652 0.81722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.97 9.41 21.83 0.21 -39.76 15 2 C 0.03 1.39 5.45 85.29 0.46 1.85 15 3 Si 0.98 38.98 29.57 68.60 2.03 41.00 15 4 H -0.27 -10.42 7.11 99.48 0.71 -9.72 15 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 15 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 7 C -0.47 -26.02 9.13 23.47 0.21 -25.81 15 8 H 0.09 4.53 7.86 -2.91 -0.02 4.50 15 9 C 0.22 12.71 6.50 40.26 0.26 12.97 15 10 C -0.29 -14.67 9.83 22.88 0.22 -14.44 15 11 C -0.06 -2.41 10.15 22.39 0.23 -2.19 15 12 C -0.30 -13.09 9.47 22.79 0.22 -12.88 15 13 C 0.15 7.28 6.73 42.15 0.28 7.56 15 14 C -0.08 -3.36 5.88 -20.01 -0.12 -3.48 15 15 C -0.07 -2.24 9.19 22.51 0.21 -2.03 15 16 C -0.06 -1.51 6.31 22.29 0.14 -1.37 15 17 Cl -0.05 -1.18 28.95 -2.72 -0.08 -1.26 15 18 C -0.07 -1.62 9.82 22.33 0.22 -1.41 15 19 C -0.15 -4.47 10.01 22.28 0.22 -4.25 15 20 C 0.11 4.39 7.27 22.61 0.16 4.56 15 21 F -0.10 -5.07 13.09 44.97 0.59 -4.49 15 22 N -0.50 -28.09 6.21 -178.22 -1.11 -29.20 15 23 H 0.28 13.90 8.29 -92.70 -0.77 13.13 15 24 H 0.11 5.06 8.06 -2.91 -0.02 5.04 15 25 H 0.14 4.80 8.06 -2.91 -0.02 4.77 15 26 H 0.13 4.72 6.21 -2.91 -0.02 4.70 15 27 H 0.15 4.44 6.21 -2.91 -0.02 4.42 15 28 H 0.18 2.79 8.06 -2.91 -0.02 2.77 15 29 H 0.17 3.87 8.06 -2.91 -0.02 3.85 15 Total: -1.00 -65.16 275.09 5.56 -59.59 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.20 Total: 15.01 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 2.73 Total: -40.90 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.90 Total: -68.97 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.59 Total: -4.49 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -65.16 5.56 -59.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241328477.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.000 kcal (2) G-P(sol) polarization free energy of solvation -65.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds