Wall clock time and date at job start Mon Mar 30 2020 01:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48497 * 109.47052 * 270.00165 * 3 2 1 5 5 H 1.48501 * 109.46932 * 29.99923 * 3 2 1 6 6 H 1.48495 * 109.47161 * 150.00412 * 3 2 1 7 7 C 1.39931 * 120.00667 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00738 * 163.24889 * 7 2 1 9 9 C 1.41444 * 119.99565 * 343.25054 * 7 2 1 10 10 C 1.40805 * 120.60568 * 155.75235 * 9 7 2 11 11 N 1.31497 * 120.67005 * 180.02562 * 10 9 7 12 12 C 1.31941 * 122.11915 * 359.97438 * 11 10 9 13 13 C 1.39681 * 121.14893 * 0.02562 * 12 11 10 14 14 C 1.48387 * 120.40965 * 179.97438 * 13 12 11 15 15 C 1.39316 * 120.12815 * 129.99359 * 14 13 12 16 16 C 1.38115 * 119.88958 * 179.97438 * 15 14 13 17 17 Cl 1.73600 * 119.92291 * 180.28134 * 16 15 14 18 18 C 1.38455 * 120.14809 * 0.02562 * 16 15 14 19 19 C 1.38238 * 120.25741 * 359.97438 * 18 16 15 20 20 C 1.38281 * 120.10752 * 0.02562 * 19 18 16 21 21 F 1.35107 * 120.07603 * 180.02562 * 20 19 18 22 22 C 1.39172 * 119.17984 * 0.24493 * 13 12 11 23 23 H 0.97001 * 120.00292 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.66726 * 359.97438 * 10 9 7 25 25 H 1.08003 * 119.42421 * 179.97438 * 12 11 10 26 26 H 1.07993 * 120.05048 * 0.02562 * 15 14 13 27 27 H 1.07997 * 119.87331 * 180.02562 * 18 16 15 28 28 H 1.08003 * 119.94774 * 179.97438 * 19 18 16 29 29 H 1.08004 * 120.95821 * 179.74950 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.6999 7 6 2.0081 -1.2118 -0.0005 8 1 3.0537 -1.2315 -0.2701 9 6 1.3459 -2.4109 0.3519 10 6 1.8228 -3.6543 -0.1055 11 7 1.2079 -4.7698 0.2210 12 6 0.1302 -4.7799 0.9823 13 6 -0.4131 -3.5938 1.4811 14 6 -1.6260 -3.6242 2.3354 15 6 -1.6443 -2.9395 3.5485 16 6 -2.7761 -2.9707 4.3395 17 17 -2.8023 -2.1118 5.8479 18 6 -3.8916 -3.6811 3.9296 19 6 -3.8801 -4.3627 2.7270 20 6 -2.7527 -4.3386 1.9267 21 9 -2.7424 -5.0046 0.7513 22 6 0.1939 -2.3826 1.1625 23 1 -0.4850 0.8400 0.0004 24 1 2.7020 -3.6921 -0.7315 25 1 -0.3404 -5.7217 1.2231 26 1 -0.7752 -2.3846 3.8695 27 1 -4.7743 -3.7021 4.5514 28 1 -4.7529 -4.9156 2.4123 29 1 -0.2043 -1.4481 1.5293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241331367.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:02 Heat of formation + Delta-G solvation = -12.493681 kcal Electronic energy + Delta-G solvation = -18088.379784 eV Core-core repulsion = 14915.802346 eV Total energy + Delta-G solvation = -3172.577438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.54345 -39.17705 -38.04119 -36.32542 -34.18314 -32.59424 -30.45030 -30.22399 -28.52396 -25.72514 -23.47798 -22.55747 -21.56666 -20.58296 -17.79101 -17.12850 -16.34962 -16.08495 -15.65729 -15.27261 -15.23809 -14.36626 -14.23831 -13.71005 -13.21225 -13.11601 -12.90196 -12.45699 -12.26526 -11.79200 -11.62628 -11.39194 -11.32683 -11.18275 -11.04944 -10.83797 -10.64966 -10.00260 -9.48433 -9.18876 -8.52889 -8.29276 -7.96654 -7.58788 -6.94733 -4.59474 1.08307 1.21424 2.14817 2.49709 2.77835 2.97631 3.01028 3.11394 3.64362 3.78563 4.40115 4.49811 4.80943 4.91460 5.19929 5.34940 5.50376 5.79675 5.89059 5.96058 6.13396 6.23323 6.33621 6.41226 6.63029 6.83969 6.87044 6.98339 7.07779 7.51523 7.72754 7.77922 8.28971 8.56151 8.58115 9.50463 9.96693 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.006303 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.599312 B = 4441.023142 C = 5644.216812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.448 4.448 8 H 0.085 0.915 9 C 0.061 3.939 10 C -0.012 4.012 11 N -0.468 5.468 12 C -0.011 4.011 13 C -0.103 4.103 14 C -0.024 4.024 15 C -0.075 4.075 16 C -0.044 4.044 17 Cl -0.074 7.074 18 C -0.098 4.098 19 C -0.144 4.144 20 C 0.108 3.892 21 F -0.127 7.127 22 C -0.109 4.109 23 H 0.285 0.715 24 H 0.129 0.871 25 H 0.120 0.880 26 H 0.142 0.858 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 -1.437 7.670 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.478 4.478 8 H 0.103 0.897 9 C 0.057 3.943 10 C -0.173 4.173 11 N -0.175 5.175 12 C -0.169 4.169 13 C -0.105 4.105 14 C -0.026 4.026 15 C -0.094 4.094 16 C -0.071 4.071 17 Cl -0.045 7.045 18 C -0.117 4.117 19 C -0.163 4.163 20 C 0.089 3.911 21 F -0.106 7.106 22 C -0.135 4.135 23 H 0.096 0.904 24 H 0.146 0.854 25 H 0.137 0.863 26 H 0.160 0.840 27 H 0.155 0.845 28 H 0.159 0.841 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.890 -2.015 7.435 10.335 hybrid contribution -0.140 1.626 0.156 1.640 sum -7.031 -0.389 7.590 10.353 Atomic orbital electron populations 1.69773 1.07718 1.29839 1.34028 1.25981 0.94794 1.01688 0.91995 0.86236 0.80626 0.80083 0.79482 1.19247 1.19904 1.18220 1.19560 0.97966 0.90640 1.39620 0.89674 1.18455 0.92029 0.93821 0.90040 1.22597 1.02342 0.88044 1.04311 1.66966 1.07754 1.31707 1.11058 1.21694 0.96772 0.95073 1.03380 1.19241 0.94762 0.96046 1.00498 1.18953 0.93489 0.95909 0.94278 1.21065 0.97504 0.98427 0.92372 1.20786 0.96356 1.00298 0.89671 1.98354 1.98703 1.76019 1.31418 1.20750 0.97486 0.97177 0.96274 1.20941 0.97912 1.02613 0.94841 1.17822 0.94602 0.95568 0.83121 1.91528 1.96818 1.77802 1.44423 1.21777 0.97510 0.95582 0.98598 0.90399 0.85370 0.86266 0.83981 0.84462 0.84106 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.35 10.90 55.55 0.61 -18.75 15 2 C 0.07 1.76 5.19 -17.35 -0.09 1.67 15 3 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 15 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 7 C -0.45 -11.18 9.09 -37.73 -0.34 -11.52 15 8 H 0.09 2.01 7.90 -52.49 -0.41 1.59 15 9 C 0.06 1.56 5.59 -106.71 -0.60 0.96 15 10 C -0.01 -0.29 10.96 -16.73 -0.18 -0.47 15 11 N -0.47 -11.55 10.32 -12.28 -0.13 -11.68 15 12 C -0.01 -0.26 10.04 -16.97 -0.17 -0.44 15 13 C -0.10 -2.34 5.32 -104.83 -0.56 -2.90 15 14 C -0.02 -0.46 5.49 -104.84 -0.58 -1.04 15 15 C -0.07 -1.27 9.31 -39.23 -0.37 -1.63 15 16 C -0.04 -0.64 6.31 -39.55 -0.25 -0.89 15 17 Cl -0.07 -0.95 28.95 -51.86 -1.50 -2.45 15 18 C -0.10 -1.24 9.82 -39.50 -0.39 -1.63 15 19 C -0.14 -1.96 10.01 -39.57 -0.40 -2.35 15 20 C 0.11 1.88 7.16 -39.09 -0.28 1.60 15 21 F -0.13 -2.40 15.91 2.25 0.04 -2.36 15 22 C -0.11 -2.70 8.30 -38.23 -0.32 -3.02 15 23 H 0.28 6.36 8.30 -40.82 -0.34 6.02 15 24 H 0.13 2.91 8.06 -52.48 -0.42 2.49 15 25 H 0.12 2.56 7.78 -52.48 -0.41 2.15 15 26 H 0.14 2.39 8.05 -52.49 -0.42 1.97 15 27 H 0.14 1.33 8.06 -52.49 -0.42 0.91 15 28 H 0.14 1.50 8.06 -52.48 -0.42 1.07 15 29 H 0.13 3.31 6.19 -52.48 -0.32 2.99 15 LS Contribution 281.98 15.07 4.25 4.25 Total: -1.00 -26.68 281.98 -8.25 -34.93 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -1.97 Total: 5.14 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -4.51 Total: -21.66 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.48 Total: -30.42 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.68 -8.25 -34.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241331367.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.437 kcal (2) G-P(sol) polarization free energy of solvation -26.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds