Wall clock time and date at job start Mon Mar 30 2020 01:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48497 * 109.47052 * 270.00165 * 3 2 1 5 5 H 1.48501 * 109.46932 * 29.99923 * 3 2 1 6 6 H 1.48495 * 109.47161 * 150.00412 * 3 2 1 7 7 C 1.39931 * 120.00667 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00738 * 163.24889 * 7 2 1 9 9 C 1.41444 * 119.99565 * 343.25054 * 7 2 1 10 10 C 1.40805 * 120.60568 * 155.75235 * 9 7 2 11 11 N 1.31497 * 120.67005 * 180.02562 * 10 9 7 12 12 C 1.31941 * 122.11915 * 359.97438 * 11 10 9 13 13 C 1.39681 * 121.14893 * 0.02562 * 12 11 10 14 14 C 1.48387 * 120.40965 * 179.97438 * 13 12 11 15 15 C 1.39316 * 120.12815 * 129.99359 * 14 13 12 16 16 C 1.38115 * 119.88958 * 179.97438 * 15 14 13 17 17 Cl 1.73600 * 119.92291 * 180.28134 * 16 15 14 18 18 C 1.38455 * 120.14809 * 0.02562 * 16 15 14 19 19 C 1.38238 * 120.25741 * 359.97438 * 18 16 15 20 20 C 1.38281 * 120.10752 * 0.02562 * 19 18 16 21 21 F 1.35107 * 120.07603 * 180.02562 * 20 19 18 22 22 C 1.39172 * 119.17984 * 0.24493 * 13 12 11 23 23 H 0.97001 * 120.00292 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.66726 * 359.97438 * 10 9 7 25 25 H 1.08003 * 119.42421 * 179.97438 * 12 11 10 26 26 H 1.07993 * 120.05048 * 0.02562 * 15 14 13 27 27 H 1.07997 * 119.87331 * 180.02562 * 18 16 15 28 28 H 1.08003 * 119.94774 * 179.97438 * 19 18 16 29 29 H 1.08004 * 120.95821 * 179.74950 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.6999 7 6 2.0081 -1.2118 -0.0005 8 1 3.0537 -1.2315 -0.2701 9 6 1.3459 -2.4109 0.3519 10 6 1.8228 -3.6543 -0.1055 11 7 1.2079 -4.7698 0.2210 12 6 0.1302 -4.7799 0.9823 13 6 -0.4131 -3.5938 1.4811 14 6 -1.6260 -3.6242 2.3354 15 6 -1.6443 -2.9395 3.5485 16 6 -2.7761 -2.9707 4.3395 17 17 -2.8023 -2.1118 5.8479 18 6 -3.8916 -3.6811 3.9296 19 6 -3.8801 -4.3627 2.7270 20 6 -2.7527 -4.3386 1.9267 21 9 -2.7424 -5.0046 0.7513 22 6 0.1939 -2.3826 1.1625 23 1 -0.4850 0.8400 0.0004 24 1 2.7020 -3.6921 -0.7315 25 1 -0.3404 -5.7217 1.2231 26 1 -0.7752 -2.3846 3.8695 27 1 -4.7743 -3.7021 4.5514 28 1 -4.7529 -4.9156 2.4123 29 1 -0.2043 -1.4481 1.5293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241331367.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:02 Heat of formation + Delta-G solvation = -25.127435 kcal Electronic energy + Delta-G solvation = -18088.927625 eV Core-core repulsion = 14915.802346 eV Total energy + Delta-G solvation = -3173.125278 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.92520 -40.67190 -39.60768 -37.44730 -36.02175 -34.09942 -32.31682 -31.47801 -30.03980 -27.59436 -24.94274 -23.99621 -23.23935 -22.18288 -19.44124 -18.54332 -17.78055 -17.50851 -17.28650 -16.99538 -16.70801 -16.05396 -15.61926 -15.06803 -14.53543 -14.42364 -14.37611 -14.16868 -13.67907 -13.50310 -13.35940 -13.15528 -12.82444 -12.55827 -12.35753 -12.18559 -12.02005 -11.66323 -11.25093 -10.63158 -10.18565 -9.89838 -9.70530 -9.24133 -8.74807 -6.50927 -0.22176 -0.01371 0.74335 0.94830 1.06361 1.38658 1.48130 1.54837 2.16366 2.37987 2.66178 3.18766 3.52062 3.58545 3.73090 4.01090 4.08912 4.15458 4.52340 4.56546 4.72779 4.75691 4.89311 4.97555 5.04403 5.12575 5.16925 5.25452 5.62313 5.69131 5.83699 5.92142 6.40762 6.68763 6.70197 7.60359 8.19459 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.006303 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.599312 B = 4441.023142 C = 5644.216812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.255 1.255 7 C -0.477 4.477 8 H 0.090 0.910 9 C 0.038 3.962 10 C -0.034 4.034 11 N -0.479 5.479 12 C -0.025 4.025 13 C -0.093 4.093 14 C -0.059 4.059 15 C -0.083 4.083 16 C -0.044 4.044 17 Cl -0.056 7.056 18 C -0.076 4.076 19 C -0.126 4.126 20 C 0.090 3.910 21 F -0.142 7.142 22 C -0.131 4.131 23 H 0.293 0.707 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.180 0.820 28 H 0.179 0.821 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 -0.774 9.068 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.179 1.179 7 C -0.506 4.506 8 H 0.108 0.892 9 C 0.034 3.966 10 C -0.195 4.195 11 N -0.186 5.186 12 C -0.183 4.183 13 C -0.095 4.095 14 C -0.061 4.061 15 C -0.101 4.101 16 C -0.071 4.071 17 Cl -0.027 7.027 18 C -0.094 4.094 19 C -0.145 4.145 20 C 0.071 3.929 21 F -0.120 7.120 22 C -0.157 4.157 23 H 0.104 0.896 24 H 0.157 0.843 25 H 0.153 0.847 26 H 0.150 0.850 27 H 0.198 0.802 28 H 0.197 0.803 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.715 -1.371 8.836 12.486 hybrid contribution 0.293 1.383 -0.173 1.424 sum -8.422 0.012 8.662 12.082 Atomic orbital electron populations 1.69827 1.09212 1.31260 1.33946 1.26852 0.95479 1.04801 0.90794 0.85121 0.79167 0.75329 0.79722 1.18535 1.18957 1.17877 1.19869 0.98437 0.91477 1.40777 0.89206 1.18796 0.92743 0.94549 0.90523 1.22780 1.03225 0.88077 1.05387 1.66949 1.08347 1.31804 1.11514 1.22023 0.96668 0.96093 1.03490 1.19481 0.95478 0.94945 0.99591 1.18845 0.93136 0.98934 0.95229 1.20974 0.98434 0.98402 0.92337 1.20887 0.96000 1.00264 0.89957 1.98365 1.98638 1.75658 1.30062 1.21252 0.97846 0.94516 0.95811 1.21335 0.97418 1.01712 0.94001 1.18121 0.95501 0.95901 0.83403 1.91488 1.96941 1.78177 1.45443 1.21762 0.98254 0.96029 0.99654 0.89571 0.84320 0.84724 0.85049 0.80224 0.80323 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.83 10.90 21.82 0.24 -40.59 15 2 C 0.04 1.78 5.19 85.25 0.44 2.22 15 3 Si 0.99 35.90 29.59 68.60 2.03 37.93 15 4 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 5 H -0.27 -9.19 7.11 99.48 0.71 -8.48 15 6 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 7 C -0.48 -24.50 9.09 23.47 0.21 -24.29 15 8 H 0.09 4.36 7.90 -2.91 -0.02 4.33 15 9 C 0.04 2.04 5.59 -21.21 -0.12 1.92 15 10 C -0.03 -1.75 10.96 85.37 0.94 -0.82 15 11 N -0.48 -24.45 10.32 -192.76 -1.99 -26.44 15 12 C -0.03 -1.20 10.04 85.03 0.85 -0.35 15 13 C -0.09 -4.36 5.32 -20.00 -0.11 -4.47 15 14 C -0.06 -2.29 5.49 -20.00 -0.11 -2.40 15 15 C -0.08 -2.77 9.31 22.50 0.21 -2.56 15 16 C -0.04 -1.17 6.31 22.29 0.14 -1.03 15 17 Cl -0.06 -1.30 28.95 -2.72 -0.08 -1.38 15 18 C -0.08 -1.60 9.82 22.32 0.22 -1.38 15 19 C -0.13 -2.97 10.01 22.28 0.22 -2.75 15 20 C 0.09 3.03 7.16 22.59 0.16 3.20 15 21 F -0.14 -5.30 15.91 44.97 0.72 -4.58 15 22 C -0.13 -6.78 8.30 23.14 0.19 -6.59 15 23 H 0.29 13.18 8.30 -92.71 -0.77 12.41 15 24 H 0.14 6.60 8.06 -2.91 -0.02 6.57 15 25 H 0.14 5.89 7.78 -2.91 -0.02 5.87 15 26 H 0.13 4.56 8.05 -2.91 -0.02 4.54 15 27 H 0.18 2.36 8.06 -2.91 -0.02 2.34 15 28 H 0.18 2.88 8.06 -2.91 -0.02 2.85 15 29 H 0.12 6.44 6.19 -2.91 -0.02 6.42 15 Total: -1.00 -59.73 281.98 5.37 -54.37 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 1.19 Total: 20.01 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 3.26 Total: -39.30 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -1.75 Total: -67.04 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.72 Total: -4.58 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -59.73 5.37 -54.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241331367.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.240 kcal (2) G-P(sol) polarization free energy of solvation -59.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds