Wall clock time and date at job start Mon Mar 30 2020 01:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86791 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47128 * 299.99515 * 3 2 1 6 6 H 1.48495 * 109.47304 * 59.99652 * 3 2 1 7 7 C 1.40174 * 119.99423 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99393 * 194.16707 * 7 2 1 9 9 C 1.40907 * 120.00265 * 14.16715 * 7 2 1 10 10 C 1.41125 * 121.10641 * 24.43342 * 9 7 2 11 11 C 1.36472 * 119.10360 * 180.02562 * 10 9 7 12 12 N 1.32215 * 121.51988 * 359.74832 * 11 10 9 13 13 C 1.31660 * 122.50646 * 0.52942 * 12 11 10 14 14 C 1.39340 * 120.65499 * 359.46963 * 13 12 11 15 15 C 1.47797 * 120.78540 * 180.23251 * 14 13 12 16 16 C 1.39674 * 120.15737 * 65.00427 * 15 14 13 17 17 C 1.37984 * 119.86126 * 180.02562 * 16 15 14 18 18 Cl 1.73597 * 119.91104 * 179.97438 * 17 16 15 19 19 C 1.38582 * 120.17922 * 0.02562 * 17 16 15 20 20 C 1.38294 * 120.32656 * 359.97438 * 19 17 16 21 21 C 1.38210 * 120.13776 * 359.72084 * 20 19 17 22 22 F 1.35099 * 120.09104 * 180.28267 * 21 20 19 23 23 H 0.96995 * 119.99331 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.44835 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.23468 * 179.97438 * 11 10 9 26 26 H 1.07999 * 119.66966 * 179.75214 * 13 12 11 27 27 H 1.08000 * 120.07464 * 359.97438 * 16 15 14 28 28 H 1.07998 * 119.83205 * 180.02562 * 19 17 16 29 29 H 1.07995 * 119.92733 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6176 0.0000 4 1 3.7010 1.3463 -0.0006 5 1 1.8823 2.3963 -1.2126 6 1 1.8822 2.3964 1.2124 7 6 2.0077 -1.2140 0.0005 8 1 3.0631 -1.2281 0.2295 9 6 1.3352 -2.4158 -0.2976 10 6 0.1550 -2.4184 -1.0714 11 6 -0.4633 -3.6060 -1.3350 12 7 0.0207 -4.7518 -0.8866 13 6 1.1135 -4.8205 -0.1556 14 6 1.8230 -3.6668 0.1718 15 6 3.0529 -3.7411 0.9880 16 6 4.1850 -4.3927 0.4933 17 6 5.3299 -4.4589 1.2607 18 17 6.7375 -5.2690 0.6474 19 6 5.3587 -3.8814 2.5201 20 6 4.2422 -3.2344 3.0174 21 6 3.0904 -3.1547 2.2576 22 9 2.0021 -2.5175 2.7420 23 1 -0.4849 0.8401 -0.0004 24 1 -0.2533 -1.4929 -1.4497 25 1 -1.3669 -3.6104 -1.9266 26 1 1.4660 -5.7811 0.1899 27 1 4.1642 -4.8445 -0.4874 28 1 6.2579 -3.9362 3.1158 29 1 4.2719 -2.7863 3.9995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241331558.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:09 Heat of formation + Delta-G solvation = -22.767947 kcal Electronic energy + Delta-G solvation = -18511.729161 eV Core-core repulsion = 15338.706198 eV Total energy + Delta-G solvation = -3173.022963 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.66163 -40.57511 -39.45466 -37.34022 -36.09309 -33.85327 -32.17860 -31.27632 -29.98064 -27.89301 -24.73840 -23.70008 -23.23985 -22.03905 -19.54582 -18.52131 -17.62968 -17.44235 -17.27594 -16.57996 -16.25192 -15.97316 -15.69052 -14.97354 -14.48004 -14.34458 -14.18964 -14.12332 -14.07776 -13.47379 -13.22003 -13.02806 -12.83450 -12.37910 -12.15022 -12.03585 -11.93470 -11.61584 -11.33190 -10.28276 -9.97915 -9.79261 -9.59309 -9.22656 -8.73335 -6.60713 0.02664 0.15567 0.81199 0.95034 1.14449 1.34669 1.48806 1.51250 2.12980 2.52535 2.71681 3.41022 3.61537 3.79741 3.88621 4.00889 4.18914 4.31633 4.47578 4.75026 4.91216 4.93726 4.95656 5.12918 5.16209 5.18342 5.35054 5.42223 5.51908 5.78123 5.90343 6.12245 6.45224 6.73295 6.75794 7.67067 8.16426 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.007381 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.780225 B = 3792.588461 C = 4706.559262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.041 3.959 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.076 0.924 9 C 0.122 3.878 10 C -0.230 4.230 11 C 0.079 3.921 12 N -0.590 5.590 13 C 0.126 3.874 14 C -0.250 4.250 15 C -0.023 4.023 16 C -0.089 4.089 17 C -0.045 4.045 18 Cl -0.060 7.060 19 C -0.086 4.086 20 C -0.139 4.139 21 C 0.091 3.909 22 F -0.145 7.145 23 H 0.294 0.706 24 H 0.120 0.880 25 H 0.142 0.858 26 H 0.147 0.853 27 H 0.137 0.863 28 H 0.173 0.827 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.464 -2.234 4.241 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.178 4.178 3 Si 0.798 3.202 4 H -0.180 1.180 5 H -0.183 1.183 6 H -0.188 1.188 7 C -0.482 4.482 8 H 0.094 0.906 9 C 0.115 3.885 10 C -0.253 4.253 11 C -0.069 4.069 12 N -0.305 5.305 13 C -0.031 4.031 14 C -0.256 4.256 15 C -0.025 4.025 16 C -0.108 4.108 17 C -0.072 4.072 18 Cl -0.031 7.031 19 C -0.104 4.104 20 C -0.158 4.158 21 C 0.071 3.929 22 F -0.124 7.124 23 H 0.106 0.894 24 H 0.138 0.862 25 H 0.160 0.840 26 H 0.164 0.836 27 H 0.155 0.845 28 H 0.191 0.809 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.831 -2.899 3.966 10.990 hybrid contribution 0.062 1.583 0.038 1.585 sum 9.892 -1.316 4.004 10.753 Atomic orbital electron populations 1.69774 1.09083 1.31201 1.32677 1.26834 0.95505 1.04629 0.90822 0.85203 0.79561 0.76079 0.79361 1.18034 1.18293 1.18810 1.19657 0.96825 0.91285 1.40470 0.90625 1.18069 0.90944 0.92228 0.87299 1.21988 1.00457 0.98556 1.04254 1.22073 0.98655 0.88460 0.97702 1.67387 1.15898 1.29252 1.17936 1.22469 0.90748 0.96584 0.93331 1.19561 1.00847 0.94962 1.10220 1.18617 0.94022 0.97599 0.92229 1.21089 0.90161 0.99430 1.00136 1.20838 0.88942 1.01583 0.95854 1.98350 1.39165 1.77911 1.87653 1.21141 0.99215 0.96319 0.93714 1.21253 0.90759 1.02138 1.01647 1.18382 0.84752 0.96355 0.93391 1.91477 1.53783 1.79558 1.87562 0.89443 0.86217 0.84050 0.83617 0.84514 0.80914 0.81612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.81 10.80 21.86 0.24 -39.58 15 2 C 0.04 1.95 5.25 85.33 0.45 2.40 15 3 Si 0.98 36.31 29.58 68.60 2.03 38.34 15 4 H -0.26 -9.42 7.11 99.48 0.71 -8.72 15 5 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 15 7 C -0.45 -23.12 7.66 23.39 0.18 -22.94 15 8 H 0.08 3.82 7.18 -2.91 -0.02 3.80 15 9 C 0.12 6.40 5.50 -20.92 -0.12 6.29 15 10 C -0.23 -11.93 8.73 22.57 0.20 -11.74 15 11 C 0.08 3.80 11.09 84.22 0.93 4.73 15 12 N -0.59 -28.51 10.32 -196.19 -2.02 -30.53 15 13 C 0.13 5.80 10.92 84.98 0.93 6.72 15 14 C -0.25 -11.91 5.07 -19.49 -0.10 -12.01 15 15 C -0.02 -0.92 4.49 -20.00 -0.09 -1.01 15 16 C -0.09 -3.02 9.53 22.56 0.21 -2.81 15 17 C -0.05 -1.27 6.31 22.29 0.14 -1.12 15 18 Cl -0.06 -1.41 28.95 -2.72 -0.08 -1.49 15 19 C -0.09 -2.09 9.82 22.37 0.22 -1.87 15 20 C -0.14 -3.98 10.01 22.28 0.22 -3.75 15 21 C 0.09 3.51 6.57 22.66 0.15 3.66 15 22 F -0.15 -6.58 16.19 44.97 0.73 -5.85 15 23 H 0.29 13.05 8.29 -92.71 -0.77 12.28 15 24 H 0.12 6.32 6.13 -2.91 -0.02 6.30 15 25 H 0.14 5.95 8.06 -2.91 -0.02 5.93 15 26 H 0.15 5.78 8.06 -2.91 -0.02 5.76 15 27 H 0.14 4.49 8.06 -2.91 -0.02 4.47 15 28 H 0.17 2.89 8.06 -2.91 -0.02 2.87 15 29 H 0.17 3.69 8.06 -2.91 -0.02 3.67 15 Total: -1.00 -58.76 280.01 5.42 -53.34 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 1.20 Total: 19.22 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 3.33 Total: -33.46 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -1.79 Total: -70.11 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.73 Total: -5.85 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -58.76 5.42 -53.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241331558.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.574 kcal (2) G-P(sol) polarization free energy of solvation -58.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds