Wall clock time and date at job start Mon Mar 30 2020 01:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30721 * 1 3 3 Si 1.86795 * 119.99699 * 2 1 4 4 H 1.48502 * 109.47317 * 180.27434 * 3 2 1 5 5 H 1.48497 * 109.47320 * 300.27788 * 3 2 1 6 6 H 1.48507 * 109.47345 * 60.27342 * 3 2 1 7 7 C 1.40095 * 120.00235 * 180.27447 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72756 * 7 2 1 9 9 C 1.40964 * 119.99687 * 359.72544 * 7 2 1 10 10 C 1.40892 * 119.67334 * 179.72941 * 9 7 2 11 11 C 1.36666 * 119.25140 * 179.70243 * 10 9 7 12 12 C 1.40293 * 118.60741 * 0.55712 * 11 10 9 13 13 C 1.47910 * 120.34770 * 179.70180 * 12 11 10 14 14 C 1.39634 * 120.15329 * 309.74626 * 13 12 11 15 15 C 1.37995 * 119.86150 * 179.81567 * 14 13 12 16 16 Cl 1.73595 * 119.91074 * 180.20732 * 15 14 13 17 17 C 1.38576 * 120.17775 * 0.44176 * 15 14 13 18 18 C 1.38280 * 120.31652 * 359.78662 * 17 15 14 19 19 C 1.38224 * 120.13133 * 0.02562 * 18 17 15 20 20 F 1.35102 * 120.08645 * 179.97438 * 19 18 17 21 21 C 1.40126 * 119.30035 * 359.72749 * 12 11 10 22 22 N 1.31176 * 120.68811 * 359.97133 * 21 12 11 23 23 H 0.96990 * 120.00505 * 359.72765 * 1 2 3 24 24 H 1.08001 * 120.37344 * 359.97438 * 10 9 7 25 25 H 1.08003 * 120.69305 * 180.28140 * 11 10 9 26 26 H 1.08001 * 120.06914 * 0.02562 * 14 13 12 27 27 H 1.07997 * 119.83637 * 179.77089 * 17 15 14 28 28 H 1.08000 * 119.93467 * 179.97438 * 18 17 15 29 29 H 1.08002 * 119.65260 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7011 1.3465 -0.0067 5 1 1.8773 2.3994 -1.2091 6 1 1.8873 2.3936 1.2159 7 6 2.0077 -1.2132 -0.0058 8 1 3.0877 -1.2131 -0.0103 9 6 1.3029 -2.4340 -0.0058 10 6 2.0143 -3.6501 -0.0175 11 6 1.3223 -4.8286 -0.0112 12 6 -0.0799 -4.7842 -0.0052 13 6 -0.8672 -6.0364 -0.0049 14 6 -0.5909 -7.0389 -0.9369 15 6 -1.3267 -8.2063 -0.9287 16 17 -0.9807 -9.4556 -2.0833 17 6 -2.3443 -8.3819 -0.0046 18 6 -2.6273 -7.3921 0.9186 19 6 -1.8959 -6.2192 0.9246 20 9 -2.1736 -5.2525 1.8266 21 6 -0.7267 -3.5412 -0.0001 22 7 -0.0349 -2.4266 -0.0002 23 1 -0.4850 0.8399 0.0040 24 1 3.0942 -3.6510 -0.0268 25 1 1.8440 -5.7743 -0.0153 26 1 0.1992 -6.9023 -1.6603 27 1 -2.9190 -9.2962 -0.0056 28 1 -3.4219 -7.5353 1.6358 29 1 -1.8059 -3.5004 0.0041 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241331979.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:04 Heat of formation + Delta-G solvation = -3.326076 kcal Electronic energy + Delta-G solvation = -17822.362471 eV Core-core repulsion = 14650.182571 eV Total energy + Delta-G solvation = -3172.179901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.41694 -39.02397 -37.93916 -36.28615 -33.97323 -32.05073 -30.65766 -30.12740 -28.90816 -25.79833 -22.91218 -22.55344 -21.56733 -20.58990 -17.66289 -17.35528 -16.28175 -16.21736 -15.68481 -15.15014 -14.49002 -14.27355 -14.14346 -13.73591 -13.11888 -13.05974 -12.70002 -12.50038 -12.23760 -11.93873 -11.51385 -11.35580 -11.13521 -11.10823 -10.98589 -10.81233 -10.43366 -10.06825 -9.61300 -8.97460 -8.47157 -8.30503 -7.72924 -7.49115 -6.59823 -4.70266 1.18949 1.30716 2.19514 2.57720 2.97436 2.98960 3.03379 3.04110 3.74329 3.79519 4.51396 4.59228 4.90257 5.05536 5.34635 5.45548 5.73080 5.94396 5.96023 5.96231 6.10811 6.28944 6.33675 6.44892 6.63395 6.72243 6.91471 7.00509 7.23345 7.41240 7.57669 7.85503 8.02803 8.43895 8.72605 9.93267 10.09862 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.032920 B = 0.004156 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.333132 B = 6736.037707 C = 7288.688661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.698 5.698 2 C 0.062 3.938 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.408 4.408 8 H 0.089 0.911 9 C 0.253 3.747 10 C -0.272 4.272 11 C -0.029 4.029 12 C -0.291 4.291 13 C 0.009 3.991 14 C -0.096 4.096 15 C -0.039 4.039 16 Cl -0.080 7.080 17 C -0.115 4.115 18 C -0.139 4.139 19 C 0.088 3.912 20 F -0.130 7.130 21 C 0.169 3.831 22 N -0.487 5.487 23 H 0.277 0.723 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -10.485 -0.630 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.165 4.165 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.437 4.437 8 H 0.107 0.893 9 C 0.130 3.870 10 C -0.294 4.294 11 C -0.052 4.052 12 C -0.297 4.297 13 C 0.007 3.993 14 C -0.115 4.115 15 C -0.066 4.066 16 Cl -0.052 7.052 17 C -0.134 4.134 18 C -0.158 4.158 19 C 0.069 3.931 20 F -0.109 7.109 21 C -0.001 4.001 22 N -0.199 5.199 23 H 0.088 0.912 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.502 -9.534 -0.698 10.181 hybrid contribution 0.723 -0.171 0.072 0.746 sum -2.779 -9.706 -0.626 10.115 Atomic orbital electron populations 1.70127 1.07387 1.28343 1.25942 1.26213 0.95025 1.01559 0.93714 0.86191 0.80838 0.80617 0.78821 1.18170 1.19575 1.19565 1.19819 0.94693 0.89540 1.39670 0.89317 1.18684 0.88524 0.91999 0.87786 1.21404 0.98909 0.93446 1.15685 1.20539 0.92418 0.96843 0.95436 1.18784 0.93169 0.91367 1.26361 1.18863 0.93646 0.94565 0.92269 1.21101 1.00235 0.91296 0.98901 1.20812 0.99668 0.91232 0.94872 1.98345 1.94705 1.52829 1.59276 1.20677 0.97768 0.99742 0.95195 1.20911 1.01181 0.92776 1.00914 1.17972 0.98045 0.86936 0.90165 1.91510 1.92677 1.61757 1.64939 1.22672 0.98512 0.87527 0.91360 1.68811 1.07093 1.25958 1.18009 0.91153 0.87987 0.88447 0.84493 0.84856 0.84511 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.95 11.44 55.55 0.64 -17.31 15 2 C 0.06 1.52 5.50 -17.33 -0.10 1.42 15 3 Si 0.91 17.69 29.56 -169.99 -5.02 12.66 15 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 5 H -0.27 -5.18 7.11 56.52 0.40 -4.77 15 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 7 C -0.41 -10.43 9.12 -37.85 -0.35 -10.78 15 8 H 0.09 2.10 7.85 -52.49 -0.41 1.69 15 9 C 0.25 6.70 6.55 -84.98 -0.56 6.14 15 10 C -0.27 -6.42 9.76 -39.15 -0.38 -6.81 15 11 C -0.03 -0.63 9.60 -39.38 -0.38 -1.01 15 12 C -0.29 -6.36 5.35 -104.46 -0.56 -6.92 15 13 C 0.01 0.16 5.50 -104.82 -0.58 -0.41 15 14 C -0.10 -1.55 9.32 -39.15 -0.36 -1.92 15 15 C -0.04 -0.55 6.31 -39.55 -0.25 -0.80 15 16 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.50 15 17 C -0.11 -1.46 9.82 -39.44 -0.39 -1.85 15 18 C -0.14 -1.90 10.01 -39.57 -0.40 -2.30 15 19 C 0.09 1.53 7.17 -38.99 -0.28 1.25 15 20 F -0.13 -2.48 15.92 2.25 0.04 -2.44 15 21 C 0.17 4.08 10.05 -17.12 -0.17 3.91 15 22 N -0.49 -13.20 7.83 -10.84 -0.08 -13.28 15 23 H 0.28 6.38 8.29 -40.82 -0.34 6.04 15 24 H 0.10 2.20 8.06 -52.49 -0.42 1.78 15 25 H 0.10 1.83 8.06 -52.48 -0.42 1.41 15 26 H 0.14 2.14 8.05 -52.49 -0.42 1.72 15 27 H 0.13 1.33 8.06 -52.49 -0.42 0.91 15 28 H 0.14 1.51 8.06 -52.49 -0.42 1.08 15 29 H 0.12 2.70 7.80 -52.49 -0.41 2.29 15 LS Contribution 283.31 15.07 4.27 4.27 Total: -1.00 -27.32 283.31 -8.48 -35.81 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -2.07 Total: 2.87 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -4.74 Total: -20.07 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.55 Total: -30.59 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.02 Total: 12.66 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.32 -8.48 -35.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241331979.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.479 kcal (2) G-P(sol) polarization free energy of solvation -27.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds