Wall clock time and date at job start Mon Mar 30 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48501 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47284 * 300.00395 * 3 2 1 6 6 H 1.48504 * 109.46819 * 60.00403 * 3 2 1 7 7 C 1.40148 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99638 * 180.02562 * 7 2 1 9 9 C 1.40780 * 120.00408 * 359.97438 * 7 2 1 10 10 N 1.33707 * 119.94142 * 0.02562 * 9 7 2 11 11 C 1.31274 * 121.63846 * 179.97438 * 10 9 7 12 12 C 1.39070 * 121.34914 * 359.97438 * 11 10 9 13 13 C 1.38366 * 119.72923 * 0.02562 * 12 11 10 14 14 C 1.39714 * 118.47277 * 359.97438 * 13 12 11 15 15 C 1.47758 * 120.65015 * 180.02562 * 14 13 12 16 16 C 1.39698 * 120.16783 * 64.97686 * 15 14 13 17 17 C 1.37963 * 119.86312 * 179.97438 * 16 15 14 18 18 Cl 1.73602 * 119.90867 * 179.97438 * 17 16 15 19 19 C 1.38581 * 120.18540 * 0.02562 * 17 16 15 20 20 C 1.38294 * 120.33041 * 359.95294 * 19 17 16 21 21 C 1.38210 * 120.13999 * 359.76359 * 20 19 17 22 22 F 1.35095 * 120.09605 * 180.27746 * 21 20 19 23 23 H 0.97002 * 120.00063 * 359.97438 * 1 2 3 24 24 H 1.08007 * 119.32934 * 179.72135 * 11 10 9 25 25 H 1.07997 * 120.13628 * 179.97438 * 12 11 10 26 26 H 1.08001 * 120.76171 * 179.97438 * 13 12 11 27 27 H 1.08008 * 120.06654 * 359.97438 * 16 15 14 28 28 H 1.08002 * 119.83717 * 179.97438 * 19 17 16 29 29 H 1.08001 * 119.92981 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3463 -0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8823 2.3963 1.2126 7 6 2.0077 -1.2138 -0.0005 8 1 3.0877 -1.2137 -0.0001 9 6 1.3038 -2.4330 -0.0005 10 7 -0.0333 -2.4316 -0.0005 11 6 -0.7230 -3.5485 -0.0010 12 6 -0.0926 -4.7882 -0.0021 13 6 1.2894 -4.8551 -0.0022 14 6 2.0141 -3.6607 -0.0016 15 6 3.4916 -3.6761 -0.0022 16 6 4.1879 -4.1935 -1.0972 17 6 5.5675 -4.2043 -1.0914 18 17 6.4339 -4.8476 -2.4512 19 6 6.2636 -3.7040 -0.0025 20 6 5.5823 -3.1895 1.0855 21 6 4.2004 -3.1667 1.0914 22 9 3.5358 -2.6588 2.1523 23 1 -0.4850 0.8401 0.0004 24 1 -1.8022 -3.5039 0.0036 25 1 -0.6794 -5.6948 -0.0021 26 1 1.7962 -5.8089 -0.0026 27 1 3.6472 -4.5843 -1.9467 28 1 7.3435 -3.7156 -0.0037 29 1 6.1313 -2.8009 1.9305 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241332692.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:43 Heat of formation + Delta-G solvation = 0.314575 kcal Electronic energy + Delta-G solvation = -18509.465218 eV Core-core repulsion = 15337.443188 eV Total energy + Delta-G solvation = -3172.022030 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.15552 -38.94627 -37.80558 -36.14729 -33.77409 -32.32173 -30.38725 -30.03155 -28.53115 -25.80417 -23.26824 -22.19949 -21.44207 -20.43800 -17.60282 -17.16457 -16.17350 -16.03635 -15.63987 -14.86153 -14.56763 -14.20920 -14.11744 -13.59011 -12.92917 -12.88992 -12.76302 -12.37728 -12.11439 -11.87088 -11.33339 -11.26286 -11.15690 -10.98992 -10.90323 -10.68575 -10.40716 -9.99806 -9.51089 -8.79967 -8.33727 -8.08999 -7.70855 -7.51846 -6.54940 -4.66003 1.38579 1.48692 2.31212 2.61477 2.86542 3.02892 3.07766 3.14305 3.85386 3.87414 4.62416 4.73792 5.04533 5.19730 5.47511 5.59862 5.76043 5.99281 6.02168 6.13005 6.24794 6.39442 6.44738 6.52218 6.66266 6.78447 6.95836 7.13379 7.24114 7.43832 7.59885 7.89935 8.09720 8.49703 8.78500 9.96109 10.15234 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.007452 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.371698 B = 3756.325874 C = 4644.565370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.409 4.409 8 H 0.084 0.916 9 C 0.275 3.725 10 N -0.480 5.480 11 C 0.137 3.863 12 C -0.322 4.322 13 C -0.024 4.024 14 C -0.253 4.253 15 C 0.010 3.990 16 C -0.088 4.088 17 C -0.046 4.046 18 Cl -0.083 7.083 19 C -0.107 4.107 20 C -0.149 4.149 21 C 0.112 3.888 22 F -0.123 7.123 23 H 0.276 0.724 24 H 0.120 0.880 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.539 -4.314 -0.560 9.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.158 4.158 3 Si 0.728 3.272 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.439 4.439 8 H 0.102 0.898 9 C 0.152 3.848 10 N -0.191 5.191 11 C -0.032 4.032 12 C -0.345 4.345 13 C -0.049 4.049 14 C -0.258 4.258 15 C 0.008 3.992 16 C -0.107 4.107 17 C -0.073 4.073 18 Cl -0.054 7.054 19 C -0.126 4.126 20 C -0.168 4.168 21 C 0.093 3.907 22 F -0.101 7.101 23 H 0.087 0.913 24 H 0.138 0.862 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.005 -3.342 -0.637 8.698 hybrid contribution 0.713 -0.122 0.054 0.725 sum 8.718 -3.464 -0.583 9.399 Atomic orbital electron populations 1.70110 1.07287 1.28133 1.26897 1.26127 0.94924 1.01316 0.93447 0.86302 0.81114 0.80983 0.78843 1.18129 1.19524 1.19488 1.19617 0.94398 0.89416 1.40421 0.89835 1.18455 0.87952 0.90608 0.87797 1.68774 1.06899 1.26582 1.16894 1.22644 0.98903 0.88832 0.92841 1.21201 0.94437 0.97947 1.20922 1.20833 0.93831 0.95406 0.94797 1.19072 0.89343 0.95003 1.22333 1.18701 0.94063 0.95217 0.91176 1.21110 0.91166 1.00050 0.98338 1.20749 0.92246 1.03941 0.90317 1.98334 1.76940 1.85381 1.44784 1.20678 0.99885 0.99975 0.92047 1.20923 0.92358 1.03547 1.00005 1.18018 0.89484 0.97861 0.85385 1.91528 1.80975 1.84169 1.53468 0.91317 0.86201 0.88482 0.88459 0.84631 0.84925 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.29 11.46 55.56 0.64 -17.65 15 2 C 0.07 1.72 5.50 -17.32 -0.10 1.63 15 3 Si 0.90 18.47 29.56 -169.99 -5.02 13.44 15 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 5 H -0.27 -5.39 7.11 56.52 0.40 -4.98 15 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.41 -10.70 8.02 -37.91 -0.30 -11.00 15 8 H 0.08 2.11 6.02 -52.48 -0.32 1.80 15 9 C 0.27 7.30 6.45 -84.71 -0.55 6.75 15 10 N -0.48 -12.96 7.85 -10.91 -0.09 -13.04 15 11 C 0.14 3.23 11.17 -17.48 -0.20 3.04 15 12 C -0.32 -6.99 10.10 -39.23 -0.40 -7.38 15 13 C -0.02 -0.53 9.88 -38.98 -0.39 -0.92 15 14 C -0.25 -5.96 5.07 -104.08 -0.53 -6.48 15 15 C 0.01 0.21 4.48 -104.83 -0.47 -0.26 15 16 C -0.09 -1.57 9.53 -39.14 -0.37 -1.94 15 17 C -0.05 -0.72 6.31 -39.56 -0.25 -0.97 15 18 Cl -0.08 -1.13 28.95 -51.86 -1.50 -2.63 15 19 C -0.11 -1.54 9.82 -39.43 -0.39 -1.93 15 20 C -0.15 -2.35 10.01 -39.57 -0.40 -2.74 15 21 C 0.11 2.20 5.97 -38.96 -0.23 1.97 15 22 F -0.12 -2.68 16.12 2.25 0.04 -2.64 15 23 H 0.28 6.43 8.29 -40.82 -0.34 6.10 15 24 H 0.12 2.49 8.06 -52.48 -0.42 2.06 15 25 H 0.10 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.10 1.85 8.06 -52.49 -0.42 1.43 15 27 H 0.14 2.34 8.06 -52.48 -0.42 1.91 15 28 H 0.13 1.51 8.06 -52.49 -0.42 1.09 15 29 H 0.14 1.76 8.06 -52.49 -0.42 1.34 15 LS Contribution 280.24 15.07 4.22 4.22 Total: -1.00 -27.96 280.24 -8.26 -36.22 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -1.99 Total: 2.33 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -4.56 Total: -20.24 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.55 Total: -30.70 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.44 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.96 -8.26 -36.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241332692.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.532 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds