Wall clock time and date at job start Mon Mar 30 2020 01:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86800 * 120.00217 * 2 1 4 4 H 1.48492 * 109.47095 * 274.73396 * 3 2 1 5 5 H 1.48500 * 109.46988 * 34.73724 * 3 2 1 6 6 H 1.48500 * 109.46970 * 154.73549 * 3 2 1 7 7 C 1.39898 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00380 * 163.51080 * 7 2 1 9 9 C 1.41380 * 119.99932 * 343.51222 * 7 2 1 10 10 C 1.40805 * 120.57106 * 155.72467 * 9 7 2 11 11 N 1.31505 * 120.69461 * 180.02562 * 10 9 7 12 12 C 1.32166 * 122.07890 * 0.02562 * 11 10 9 13 13 F 1.35096 * 119.45767 * 180.02562 * 12 11 10 14 14 C 1.40062 * 121.08069 * 359.97438 * 12 11 10 15 15 C 1.48374 * 120.41946 * 179.97438 * 14 12 11 16 16 C 1.39367 * 120.11501 * 310.02817 * 15 14 12 17 17 C 1.38003 * 119.90448 * 180.02562 * 16 15 14 18 18 C 1.38333 * 120.13346 * 359.96802 * 17 16 15 19 19 C 1.38410 * 120.23014 * 0.02562 * 18 17 16 20 20 Cl 1.73607 * 119.95013 * 180.02562 * 19 18 17 21 21 C 1.38151 * 120.10005 * 359.76177 * 19 18 17 22 22 C 1.39015 * 119.16178 * 0.02562 * 14 12 11 23 23 H 0.97000 * 119.99625 * 0.02562 * 1 2 3 24 24 H 1.07997 * 119.65258 * 359.74075 * 10 9 7 25 25 H 1.08000 * 120.05112 * 359.97233 * 16 15 14 26 26 H 1.08006 * 119.93557 * 179.97438 * 17 16 15 27 27 H 1.07997 * 119.88053 * 180.02562 * 18 17 16 28 28 H 1.07994 * 120.07648 * 180.25613 * 21 19 18 29 29 H 1.08001 * 120.93425 * 180.02562 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3902 2.1041 -1.3952 5 1 1.4939 2.6217 0.7978 6 1 3.5867 1.4132 0.5976 7 6 2.0081 -1.2116 0.0005 8 1 3.0548 -1.2310 -0.2649 9 6 1.3448 -2.4106 0.3486 10 6 1.8236 -3.6529 -0.1096 11 7 1.2082 -4.7697 0.2122 12 6 0.1255 -4.7812 0.9701 13 9 -0.4642 -5.9595 1.2684 14 6 -0.4200 -3.5918 1.4697 15 6 -1.6365 -3.6217 2.3188 16 6 -2.7607 -4.3340 1.9050 17 6 -3.8900 -4.3584 2.6978 18 6 -3.9078 -3.6782 3.9022 19 6 -2.7944 -2.9692 4.3186 20 17 -2.8245 -2.1186 5.8317 21 6 -1.6573 -2.9418 3.5345 22 6 0.1920 -2.3829 1.1593 23 1 -0.4849 0.8401 -0.0004 24 1 2.7029 -3.6887 -0.7356 25 1 -2.7485 -4.8653 0.9648 26 1 -4.7616 -4.9099 2.3774 27 1 -4.7936 -3.7004 4.5196 28 1 -0.7873 -2.3919 3.8617 29 1 -0.2040 -1.4489 1.5295 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242146365.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:06 Heat of formation + Delta-G solvation = -10.829579 kcal Electronic energy + Delta-G solvation = -18091.467738 eV Core-core repulsion = 14918.962461 eV Total energy + Delta-G solvation = -3172.505277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.64805 -39.19621 -38.05303 -36.26669 -34.25924 -32.57720 -30.53493 -30.40550 -28.55569 -25.61318 -23.34581 -22.51304 -21.60565 -20.68465 -17.76743 -16.81938 -16.49279 -16.05719 -15.47229 -15.05302 -14.98285 -14.48404 -13.88469 -13.50073 -13.24627 -13.19442 -12.54436 -12.33534 -12.10844 -11.86808 -11.56847 -11.42622 -11.34641 -11.21777 -11.12473 -10.79022 -10.70682 -10.18706 -9.55845 -9.10762 -8.56370 -8.51486 -8.12413 -7.59979 -7.08492 -4.69979 1.30526 1.48585 2.24470 2.36119 2.61805 2.92205 2.93848 2.99832 3.69907 3.92285 4.30487 4.94332 5.06142 5.08547 5.28287 5.32417 5.53582 5.64219 5.91994 5.97356 6.16421 6.39484 6.44537 6.53277 6.57833 6.81307 6.83315 6.94385 7.04547 7.36748 7.54241 7.68031 8.13255 8.39174 8.41304 9.13863 9.83088 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.006503 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.282813 B = 4304.711531 C = 5716.776678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.054 3.946 10 C 0.012 3.988 11 N -0.488 5.488 12 C 0.164 3.836 13 F -0.145 7.145 14 C -0.107 4.107 15 C 0.003 3.997 16 C -0.099 4.099 17 C -0.109 4.109 18 C -0.124 4.124 19 C -0.033 4.033 20 Cl -0.083 7.083 21 C -0.098 4.098 22 C -0.095 4.095 23 H 0.288 0.712 24 H 0.140 0.860 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 -0.253 5.556 7.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.107 0.893 9 C 0.050 3.950 10 C -0.149 4.149 11 N -0.200 5.200 12 C 0.010 3.990 13 F -0.124 7.124 14 C -0.110 4.110 15 C 0.001 3.999 16 C -0.117 4.117 17 C -0.127 4.127 18 C -0.142 4.142 19 C -0.060 4.060 20 Cl -0.054 7.054 21 C -0.117 4.117 22 C -0.120 4.120 23 H 0.099 0.901 24 H 0.157 0.843 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.151 0.849 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.511 -0.849 5.399 7.762 hybrid contribution -0.151 1.430 0.379 1.487 sum -5.662 0.581 5.778 8.111 Atomic orbital electron populations 1.69767 1.07771 1.30235 1.32897 1.26035 0.94871 1.01943 0.91909 0.86157 0.80717 0.79819 0.79428 1.19200 1.19721 1.18057 1.19590 0.97990 0.90427 1.38681 0.89270 1.18491 0.92227 0.93891 0.90421 1.22326 1.01985 0.86553 1.04071 1.66290 1.07529 1.33690 1.12448 1.17475 0.95658 0.79598 1.06235 1.91403 1.82426 1.46504 1.92113 1.19088 0.96346 0.93762 1.01844 1.18705 0.93344 0.95089 0.92716 1.21367 0.92227 0.98118 0.99968 1.20973 0.98343 0.99436 0.93962 1.20945 0.97276 0.98563 0.97452 1.20755 0.96398 0.99843 0.88965 1.98342 1.98729 1.76684 1.31635 1.21132 0.97221 0.99813 0.93551 1.21761 0.96953 0.95421 0.97835 0.90086 0.84292 0.85412 0.85299 0.85461 0.84878 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.26 10.90 55.55 0.61 -17.66 15 2 C 0.07 1.62 5.19 -17.34 -0.09 1.53 15 3 Si 0.92 16.77 29.59 -169.99 -5.03 11.74 15 4 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 7 C -0.44 -10.30 9.08 -37.77 -0.34 -10.65 15 8 H 0.09 1.97 7.90 -52.49 -0.41 1.55 15 9 C 0.05 1.32 5.59 -106.70 -0.60 0.73 15 10 C 0.01 0.29 10.96 -16.72 -0.18 0.10 15 11 N -0.49 -11.94 10.33 -12.58 -0.13 -12.07 15 12 C 0.16 3.90 8.30 -16.72 -0.14 3.76 15 13 F -0.14 -3.27 15.91 2.25 0.04 -3.24 15 14 C -0.11 -2.41 5.48 -104.75 -0.57 -2.99 15 15 C 0.00 0.05 5.32 -104.90 -0.56 -0.51 15 16 C -0.10 -1.71 8.87 -39.25 -0.35 -2.05 15 17 C -0.11 -1.55 10.03 -39.63 -0.40 -1.95 15 18 C -0.12 -1.73 9.82 -39.48 -0.39 -2.12 15 19 C -0.03 -0.52 6.31 -39.55 -0.25 -0.77 15 20 Cl -0.08 -1.16 28.95 -51.86 -1.50 -2.66 15 21 C -0.10 -1.76 9.32 -39.21 -0.37 -2.13 15 22 C -0.09 -2.25 8.28 -38.27 -0.32 -2.57 15 23 H 0.29 6.11 8.30 -40.82 -0.34 5.77 15 24 H 0.14 2.94 8.06 -52.49 -0.42 2.52 15 25 H 0.13 2.18 7.80 -52.49 -0.41 1.78 15 26 H 0.13 1.42 8.06 -52.48 -0.42 0.99 15 27 H 0.13 1.45 8.06 -52.49 -0.42 1.02 15 28 H 0.13 2.37 8.05 -52.49 -0.42 1.94 15 29 H 0.14 3.38 6.20 -52.49 -0.33 3.06 15 LS Contribution 281.98 15.07 4.25 4.25 Total: -1.00 -25.57 281.98 -8.29 -33.86 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -1.97 Total: 5.37 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -4.55 Total: -19.61 kcal Atomic # 7 Polarization: -30.20 SS G_CDS: 0.48 Total: -29.72 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.24 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -25.57 -8.29 -33.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242146365.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.031 kcal (2) G-P(sol) polarization free energy of solvation -25.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds