Wall clock time and date at job start Mon Mar 30 2020 01:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86800 * 120.00217 * 2 1 4 4 H 1.48492 * 109.47095 * 274.73396 * 3 2 1 5 5 H 1.48500 * 109.46988 * 34.73724 * 3 2 1 6 6 H 1.48500 * 109.46970 * 154.73549 * 3 2 1 7 7 C 1.39898 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00380 * 163.51080 * 7 2 1 9 9 C 1.41380 * 119.99932 * 343.51222 * 7 2 1 10 10 C 1.40805 * 120.57106 * 155.72467 * 9 7 2 11 11 N 1.31505 * 120.69461 * 180.02562 * 10 9 7 12 12 C 1.32166 * 122.07890 * 0.02562 * 11 10 9 13 13 F 1.35096 * 119.45767 * 180.02562 * 12 11 10 14 14 C 1.40062 * 121.08069 * 359.97438 * 12 11 10 15 15 C 1.48374 * 120.41946 * 179.97438 * 14 12 11 16 16 C 1.39367 * 120.11501 * 310.02817 * 15 14 12 17 17 C 1.38003 * 119.90448 * 180.02562 * 16 15 14 18 18 C 1.38333 * 120.13346 * 359.96802 * 17 16 15 19 19 C 1.38410 * 120.23014 * 0.02562 * 18 17 16 20 20 Cl 1.73607 * 119.95013 * 180.02562 * 19 18 17 21 21 C 1.38151 * 120.10005 * 359.76177 * 19 18 17 22 22 C 1.39015 * 119.16178 * 0.02562 * 14 12 11 23 23 H 0.97000 * 119.99625 * 0.02562 * 1 2 3 24 24 H 1.07997 * 119.65258 * 359.74075 * 10 9 7 25 25 H 1.08000 * 120.05112 * 359.97233 * 16 15 14 26 26 H 1.08006 * 119.93557 * 179.97438 * 17 16 15 27 27 H 1.07997 * 119.88053 * 180.02562 * 18 17 16 28 28 H 1.07994 * 120.07648 * 180.25613 * 21 19 18 29 29 H 1.08001 * 120.93425 * 180.02562 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3902 2.1041 -1.3952 5 1 1.4939 2.6217 0.7978 6 1 3.5867 1.4132 0.5976 7 6 2.0081 -1.2116 0.0005 8 1 3.0548 -1.2310 -0.2649 9 6 1.3448 -2.4106 0.3486 10 6 1.8236 -3.6529 -0.1096 11 7 1.2082 -4.7697 0.2122 12 6 0.1255 -4.7812 0.9701 13 9 -0.4642 -5.9595 1.2684 14 6 -0.4200 -3.5918 1.4697 15 6 -1.6365 -3.6217 2.3188 16 6 -2.7607 -4.3340 1.9050 17 6 -3.8900 -4.3584 2.6978 18 6 -3.9078 -3.6782 3.9022 19 6 -2.7944 -2.9692 4.3186 20 17 -2.8245 -2.1186 5.8317 21 6 -1.6573 -2.9418 3.5345 22 6 0.1920 -2.3829 1.1593 23 1 -0.4849 0.8401 -0.0004 24 1 2.7029 -3.6887 -0.7356 25 1 -2.7485 -4.8653 0.9648 26 1 -4.7616 -4.9099 2.3774 27 1 -4.7936 -3.7004 4.5196 28 1 -0.7873 -2.3919 3.8617 29 1 -0.2040 -1.4489 1.5295 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242146365.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:05 Heat of formation + Delta-G solvation = -22.191731 kcal Electronic energy + Delta-G solvation = -18091.960438 eV Core-core repulsion = 14918.962461 eV Total energy + Delta-G solvation = -3172.997977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.44997 -40.67846 -39.64133 -37.45931 -36.03378 -34.10814 -32.24906 -31.75537 -30.08503 -27.41792 -24.90366 -24.00401 -23.16920 -22.23806 -19.43664 -18.56907 -17.95556 -17.79692 -16.93932 -16.68648 -16.45111 -16.01476 -15.37504 -14.93938 -14.62315 -14.49792 -14.27019 -14.01649 -13.83909 -13.66937 -13.15659 -12.90874 -12.70555 -12.54339 -12.47294 -12.28105 -11.99220 -11.74487 -11.25240 -10.64956 -10.34945 -9.89703 -9.75595 -9.25465 -8.80914 -6.53028 -0.10165 0.20550 0.63411 0.83525 1.09969 1.41118 1.47717 1.57032 2.15713 2.50987 2.67296 3.22799 3.44472 3.62124 3.88271 4.08049 4.18701 4.25166 4.42470 4.59559 4.61886 4.84100 4.89058 5.04969 5.11179 5.19400 5.30760 5.46766 5.59226 5.69870 5.79146 5.89372 6.33042 6.58085 6.62086 7.29216 8.13340 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.006503 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.282813 B = 4304.711531 C = 5716.776678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.037 3.963 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.458 4.458 8 H 0.099 0.901 9 C 0.035 3.965 10 C -0.002 4.002 11 N -0.502 5.502 12 C 0.139 3.861 13 F -0.142 7.142 14 C -0.096 4.096 15 C -0.032 4.032 16 C -0.110 4.110 17 C -0.095 4.095 18 C -0.109 4.109 19 C -0.038 4.038 20 Cl -0.067 7.067 21 C -0.110 4.110 22 C -0.115 4.115 23 H 0.297 0.703 24 H 0.158 0.842 25 H 0.123 0.877 26 H 0.170 0.830 27 H 0.165 0.835 28 H 0.122 0.878 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.899 0.631 6.380 9.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.486 4.486 8 H 0.117 0.883 9 C 0.030 3.970 10 C -0.164 4.164 11 N -0.214 5.214 12 C -0.014 4.014 13 F -0.122 7.122 14 C -0.100 4.100 15 C -0.033 4.033 16 C -0.129 4.129 17 C -0.113 4.113 18 C -0.127 4.127 19 C -0.064 4.064 20 Cl -0.038 7.038 21 C -0.129 4.129 22 C -0.140 4.140 23 H 0.108 0.892 24 H 0.175 0.825 25 H 0.141 0.859 26 H 0.188 0.812 27 H 0.182 0.818 28 H 0.140 0.860 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.841 0.012 6.227 9.251 hybrid contribution 0.163 1.162 0.175 1.187 sum -6.678 1.175 6.402 9.326 Atomic orbital electron populations 1.69817 1.09252 1.31674 1.32505 1.26900 0.95498 1.04959 0.90762 0.85069 0.79294 0.75192 0.79635 1.18482 1.19159 1.17650 1.19945 0.98615 0.90982 1.39034 0.88286 1.18819 0.92730 0.94662 0.90753 1.22603 1.02731 0.86293 1.04728 1.66266 1.08026 1.34188 1.12894 1.17681 0.96184 0.80197 1.07370 1.91386 1.82373 1.46237 1.92169 1.19297 0.96928 0.92798 1.00952 1.18689 0.93214 0.97806 0.93547 1.21467 0.92800 0.98066 1.00535 1.21382 0.98235 0.98549 0.93128 1.21406 0.97582 0.96409 0.97330 1.20874 0.96178 1.00044 0.89354 1.98347 1.98677 1.76372 1.30383 1.21058 0.98052 1.00109 0.93718 1.21723 0.97760 0.95582 0.98919 0.89227 0.82521 0.85929 0.81237 0.81785 0.85983 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.01 10.90 21.82 0.24 -37.78 15 2 C 0.04 1.64 5.19 85.24 0.44 2.08 15 3 Si 0.99 33.62 29.59 68.60 2.03 35.65 15 4 H -0.26 -8.56 7.11 99.48 0.71 -7.85 15 5 H -0.27 -8.80 7.11 99.48 0.71 -8.10 15 6 H -0.25 -8.41 7.11 99.48 0.71 -7.70 15 7 C -0.46 -21.79 9.08 23.45 0.21 -21.58 15 8 H 0.10 4.37 7.90 -2.91 -0.02 4.35 15 9 C 0.04 1.76 5.59 -21.21 -0.12 1.65 15 10 C 0.00 -0.09 10.96 85.37 0.94 0.84 15 11 N -0.50 -25.31 10.33 -193.73 -2.00 -27.31 15 12 C 0.14 6.82 8.30 85.09 0.71 7.53 15 13 F -0.14 -6.57 15.91 44.97 0.72 -5.85 15 14 C -0.10 -4.51 5.48 -19.95 -0.11 -4.62 15 15 C -0.03 -1.26 5.32 -20.05 -0.11 -1.36 15 16 C -0.11 -3.75 8.87 22.49 0.20 -3.55 15 17 C -0.10 -2.41 10.03 22.24 0.22 -2.19 15 18 C -0.11 -2.67 9.82 22.33 0.22 -2.46 15 19 C -0.04 -1.13 6.31 22.29 0.14 -0.99 15 20 Cl -0.07 -1.74 28.95 -2.72 -0.08 -1.82 15 21 C -0.11 -3.98 9.32 22.51 0.21 -3.77 15 22 C -0.11 -5.69 8.28 23.12 0.19 -5.50 15 23 H 0.30 12.54 8.30 -92.71 -0.77 11.77 15 24 H 0.16 6.78 8.06 -2.91 -0.02 6.76 15 25 H 0.12 4.20 7.80 -2.91 -0.02 4.18 15 26 H 0.17 2.91 8.06 -2.91 -0.02 2.89 15 27 H 0.16 2.86 8.06 -2.91 -0.02 2.84 15 28 H 0.12 4.52 8.05 -2.91 -0.02 4.50 15 29 H 0.13 6.64 6.20 -2.91 -0.02 6.62 15 Total: -1.00 -56.00 281.98 5.24 -50.76 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.19 Total: 20.26 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 3.15 Total: -33.90 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -1.76 Total: -65.09 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.72 Total: -5.85 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 2.03 Total: 35.65 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -56.00 5.24 -50.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242146365.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.564 kcal (2) G-P(sol) polarization free energy of solvation -55.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds