Wall clock time and date at job start Mon Mar 30 2020 01:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30715 * 1 3 3 Si 1.86791 * 120.00427 * 2 1 4 4 H 1.48500 * 109.47409 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47110 * 299.99990 * 3 2 1 6 6 H 1.48507 * 109.47160 * 59.99852 * 3 2 1 7 7 C 1.40105 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00023 * 180.02562 * 7 2 1 9 9 C 1.40976 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.40882 * 119.67939 * 180.02562 * 9 7 2 11 11 C 1.36680 * 119.25303 * 179.69713 * 10 9 7 12 12 C 1.40279 * 118.60357 * 0.54652 * 11 10 9 13 13 C 1.47941 * 120.34401 * 179.72537 * 12 11 10 14 14 C 1.39660 * 120.14584 * 310.00091 * 13 12 11 15 15 C 1.37891 * 119.91495 * 180.27629 * 14 13 12 16 16 C 1.38418 * 120.20358 * 359.72349 * 15 14 13 17 17 C 1.38545 * 120.28321 * 0.02562 * 16 15 14 18 18 F 1.35094 * 119.96019 * 179.97438 * 17 16 15 19 19 C 1.38319 * 120.08283 * 359.97438 * 17 16 15 20 20 Cl 1.73599 * 120.09796 * 180.02562 * 19 17 16 21 21 C 1.40108 * 119.30700 * 359.45293 * 12 11 10 22 22 N 1.31183 * 120.68419 * 0.27731 * 21 12 11 23 23 H 0.96999 * 119.99418 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.37336 * 359.97438 * 10 9 7 25 25 H 1.08001 * 120.69588 * 180.26950 * 11 10 9 26 26 H 1.08003 * 120.03932 * 359.97438 * 14 13 12 27 27 H 1.08004 * 119.89895 * 179.70357 * 15 14 13 28 28 H 1.07993 * 119.85966 * 179.97438 * 16 15 14 29 29 H 1.07999 * 119.65434 * 180.29614 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 3.7012 1.3462 0.0006 5 1 1.8825 2.3963 -1.2125 6 1 1.8825 2.3964 1.2125 7 6 2.0076 -1.2134 0.0005 8 1 3.0876 -1.2134 0.0010 9 6 1.3027 -2.4342 0.0005 10 6 2.0139 -3.6504 0.0016 11 6 1.3217 -4.8289 0.0079 12 6 -0.0804 -4.7843 0.0014 13 6 -0.8680 -6.0366 0.0017 14 6 -0.5800 -7.0465 -0.9190 15 6 -1.3209 -8.2095 -0.9181 16 6 -2.3457 -8.3816 -0.0038 17 6 -2.6352 -7.3874 0.9166 18 9 -3.6372 -7.5620 1.8058 19 6 -1.8995 -6.2161 0.9263 20 17 -2.2614 -4.9702 2.0798 21 6 -0.7270 -3.5413 0.0003 22 7 -0.0351 -2.4268 -0.0001 23 1 -0.4849 0.8401 -0.0004 24 1 3.0939 -3.6514 0.0021 25 1 1.8432 -5.7746 0.0133 26 1 0.2188 -6.9147 -1.6338 27 1 -1.1011 -8.9884 -1.6334 28 1 -2.9227 -9.2945 -0.0084 29 1 -1.8062 -3.5004 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242572351.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:02 Heat of formation + Delta-G solvation = -13.552774 kcal Electronic energy + Delta-G solvation = -17926.789287 eV Core-core repulsion = 14754.165923 eV Total energy + Delta-G solvation = -3172.623363 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.96348 -40.58082 -39.33136 -37.41013 -35.68229 -33.46006 -32.46067 -31.32469 -30.49294 -27.47992 -24.28810 -24.12256 -23.06929 -22.16466 -19.44974 -18.64173 -17.65217 -17.35253 -17.31919 -16.75668 -16.10888 -16.02846 -15.77026 -15.10628 -14.57011 -14.44221 -13.99953 -13.85186 -13.76859 -13.17663 -12.94763 -12.80603 -12.73803 -12.59203 -12.41200 -12.25369 -11.84311 -11.54575 -11.28715 -10.35298 -10.03197 -9.66676 -9.52278 -9.14818 -8.35593 -6.54948 -0.02866 0.07671 0.91115 1.17061 1.21404 1.39770 1.51442 1.55684 2.19154 2.54379 2.81081 3.12668 3.75357 3.87178 4.05863 4.11943 4.19324 4.33163 4.37720 4.67924 4.82320 4.90105 5.00665 5.04902 5.14193 5.27346 5.36997 5.50046 5.66514 5.80304 5.90052 6.08859 6.22228 6.65897 6.89844 8.14174 8.36708 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.004778 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.794238 B = 5858.961072 C = 6448.469064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.020 3.980 3 Si 0.990 3.010 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.449 4.449 8 H 0.096 0.904 9 C 0.223 3.777 10 C -0.287 4.287 11 C -0.027 4.027 12 C -0.271 4.271 13 C 0.029 3.971 14 C -0.125 4.125 15 C -0.066 4.066 16 C -0.153 4.153 17 C 0.094 3.906 18 F -0.140 7.140 19 C -0.105 4.105 20 Cl -0.071 7.071 21 C 0.150 3.850 22 N -0.523 5.523 23 H 0.281 0.719 24 H 0.116 0.884 25 H 0.133 0.867 26 H 0.147 0.853 27 H 0.180 0.820 28 H 0.172 0.828 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.784 -12.466 -1.912 12.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.203 4.203 3 Si 0.810 3.190 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.480 4.480 8 H 0.114 0.886 9 C 0.099 3.901 10 C -0.310 4.310 11 C -0.051 4.051 12 C -0.277 4.277 13 C 0.028 3.972 14 C -0.144 4.144 15 C -0.083 4.083 16 C -0.172 4.172 17 C 0.074 3.926 18 F -0.118 7.118 19 C -0.133 4.133 20 Cl -0.042 7.042 21 C -0.017 4.017 22 N -0.236 5.236 23 H 0.092 0.908 24 H 0.134 0.866 25 H 0.151 0.849 26 H 0.165 0.835 27 H 0.197 0.803 28 H 0.190 0.810 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.422 -11.375 -1.766 11.764 hybrid contribution 0.246 0.353 0.595 0.734 sum -2.176 -11.022 -1.170 11.296 Atomic orbital electron populations 1.70237 1.09118 1.29403 1.27943 1.27122 0.95727 1.04908 0.92542 0.85043 0.79561 0.75643 0.78802 1.17285 1.18986 1.19284 1.20138 0.95188 0.90426 1.42200 0.88644 1.19122 0.88818 0.93538 0.88620 1.21595 0.99709 0.93420 1.16232 1.20880 0.92420 0.97590 0.94187 1.19064 0.93657 0.92096 1.22835 1.18629 0.91976 0.94068 0.92576 1.21600 1.01594 0.92954 0.98220 1.21434 0.92427 0.97179 0.97275 1.21454 1.01108 0.99124 0.95510 1.17616 0.88348 0.94546 0.92068 1.91482 1.58160 1.95514 1.66665 1.21409 1.02349 0.91653 0.97888 1.98365 1.94018 1.53069 1.58737 1.22839 0.98590 0.88292 0.92007 1.68728 1.07828 1.27704 1.19303 0.90810 0.86640 0.84928 0.83509 0.80267 0.81035 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.20 11.44 21.85 0.25 -39.95 15 2 C 0.02 1.00 5.50 85.31 0.47 1.47 15 3 Si 0.99 37.27 29.56 68.60 2.03 39.30 15 4 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 5 H -0.27 -9.62 7.11 99.48 0.71 -8.91 15 6 H -0.27 -9.83 7.11 99.48 0.71 -9.12 15 7 C -0.45 -23.84 9.12 23.39 0.21 -23.62 15 8 H 0.10 4.66 7.85 -2.91 -0.02 4.64 15 9 C 0.22 12.16 6.55 40.16 0.26 12.42 15 10 C -0.29 -13.58 9.76 22.55 0.22 -13.36 15 11 C -0.03 -1.15 9.60 22.40 0.21 -0.93 15 12 C -0.27 -11.61 5.14 -19.76 -0.10 -11.71 15 13 C 0.03 1.02 5.50 -20.01 -0.11 0.91 15 14 C -0.13 -3.28 9.54 22.53 0.21 -3.07 15 15 C -0.07 -1.25 10.03 22.23 0.22 -1.02 15 16 C -0.15 -3.22 10.02 22.39 0.22 -3.00 15 17 C 0.09 2.76 7.27 22.36 0.16 2.92 15 18 F -0.14 -4.21 16.83 44.97 0.76 -3.45 15 19 C -0.11 -3.69 6.30 22.64 0.14 -3.54 15 20 Cl -0.07 -2.74 25.66 -2.72 -0.07 -2.81 15 21 C 0.15 7.43 9.37 85.24 0.80 8.23 15 22 N -0.52 -29.43 7.83 -188.22 -1.47 -30.90 15 23 H 0.28 13.64 8.29 -92.71 -0.77 12.88 15 24 H 0.12 4.95 8.06 -2.91 -0.02 4.92 15 25 H 0.13 4.50 8.06 -2.91 -0.02 4.48 15 26 H 0.15 3.43 8.05 -2.91 -0.02 3.41 15 27 H 0.18 1.81 8.06 -2.91 -0.02 1.78 15 28 H 0.17 2.39 8.06 -2.91 -0.02 2.37 15 29 H 0.12 5.65 7.16 -2.91 -0.02 5.63 15 Total: -1.00 -63.87 279.91 5.62 -58.25 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.19 Total: 13.87 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 2.93 Total: -34.30 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.22 Total: -70.86 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.76 Total: -3.45 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 2.03 Total: 39.30 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.07 Total: -2.81 kcal Total: -63.87 5.62 -58.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242572351.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.702 kcal (2) G-P(sol) polarization free energy of solvation -63.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds