Wall clock time and date at job start Mon Mar 30 2020 01:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99948 * 2 1 4 4 H 1.48499 * 109.46833 * 270.00433 * 3 2 1 5 5 H 1.48492 * 109.46891 * 30.00111 * 3 2 1 6 6 H 1.48497 * 109.46912 * 150.00018 * 3 2 1 7 7 C 1.39941 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00315 * 163.28576 * 7 2 1 9 9 C 1.41442 * 119.99394 * 343.28590 * 7 2 1 10 10 C 1.40806 * 120.59876 * 155.75331 * 9 7 2 11 11 N 1.31497 * 120.66298 * 180.02562 * 10 9 7 12 12 C 1.31940 * 122.12162 * 359.97438 * 11 10 9 13 13 C 1.39676 * 121.14971 * 359.97438 * 12 11 10 14 14 C 1.48404 * 120.40805 * 180.02562 * 13 12 11 15 15 C 1.39354 * 120.11255 * 129.97978 * 14 13 12 16 16 C 1.38004 * 119.93960 * 180.02562 * 15 14 13 17 17 C 1.38327 * 120.16881 * 359.74618 * 16 15 14 18 18 C 1.38477 * 120.23326 * 0.50879 * 17 16 15 19 19 F 1.35096 * 119.97543 * 179.76458 * 18 17 16 20 20 C 1.38393 * 120.05662 * 359.48988 * 18 17 16 21 21 Cl 1.73593 * 120.08700 * 180.27180 * 20 18 17 22 22 C 1.39173 * 119.18117 * 0.29946 * 13 12 11 23 23 H 0.97003 * 120.00519 * 359.97438 * 1 2 3 24 24 H 1.07996 * 119.66957 * 359.97438 * 10 9 7 25 25 H 1.08006 * 119.42729 * 180.02562 * 12 11 10 26 26 H 1.07998 * 120.03499 * 359.97438 * 15 14 13 27 27 H 1.07994 * 119.91478 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.88403 * 180.27829 * 17 16 15 29 29 H 1.08000 * 120.95279 * 179.70921 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0081 -1.2119 -0.0005 8 1 3.0538 -1.2315 -0.2695 9 6 1.3456 -2.4111 0.3512 10 6 1.8228 -3.6543 -0.1064 11 7 1.2076 -4.7699 0.2195 12 6 0.1295 -4.7801 0.9801 13 6 -0.4134 -3.5943 1.4799 14 6 -1.6263 -3.6250 2.3345 15 6 -1.6437 -2.9411 3.5485 16 6 -2.7734 -2.9726 4.3406 17 6 -3.8908 -3.6771 3.9302 18 6 -3.8794 -4.3636 2.7276 19 9 -4.9720 -5.0539 2.3341 20 6 -2.7517 -4.3385 1.9258 21 17 -2.7391 -5.1929 0.4148 22 6 0.1938 -2.3830 1.1619 23 1 -0.4851 0.8400 0.0004 24 1 2.7023 -3.6919 -0.7319 25 1 -0.3409 -5.7220 1.2211 26 1 -0.7737 -2.3877 3.8697 27 1 -2.7863 -2.4428 5.2816 28 1 -4.7739 -3.6950 4.5517 29 1 -0.2046 -1.4487 1.5289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242572849.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:04 Heat of formation + Delta-G solvation = -9.090925 kcal Electronic energy + Delta-G solvation = -18143.195253 eV Core-core repulsion = 14970.765370 eV Total energy + Delta-G solvation = -3172.429883 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.79893 -39.25488 -37.88082 -36.12235 -34.16667 -32.45249 -30.50527 -30.16172 -28.53975 -25.70891 -23.35873 -22.69882 -21.49499 -20.59346 -17.80063 -16.98072 -16.26987 -16.18579 -15.70695 -15.54950 -15.21980 -14.51560 -14.24624 -13.87807 -13.32171 -12.92293 -12.62561 -12.31502 -11.95867 -11.76448 -11.61729 -11.48614 -11.30579 -11.23134 -11.08185 -10.66981 -10.45761 -9.95080 -9.46850 -9.04127 -8.50147 -8.27198 -7.96223 -7.56422 -6.93214 -4.57640 1.13273 1.19876 2.39908 2.51172 2.78851 2.97389 3.00905 3.12382 3.69199 3.78967 4.23034 4.49991 4.78704 5.05723 5.23213 5.31090 5.54127 5.72634 5.94091 6.02677 6.10524 6.30558 6.44450 6.45880 6.64762 6.86690 6.87809 6.99538 7.09191 7.53720 7.74265 7.79616 8.30453 8.57660 8.59849 9.53029 9.98050 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.005936 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.780897 B = 4716.186604 C = 5407.040399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.450 4.450 8 H 0.084 0.916 9 C 0.060 3.940 10 C -0.011 4.011 11 N -0.470 5.470 12 C -0.004 4.004 13 C -0.106 4.106 14 C 0.032 3.968 15 C -0.112 4.112 16 C -0.087 4.087 17 C -0.160 4.160 18 C 0.104 3.896 19 F -0.133 7.133 20 C -0.072 4.072 21 Cl -0.042 7.042 22 C -0.106 4.106 23 H 0.284 0.716 24 H 0.128 0.872 25 H 0.121 0.879 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 -1.380 7.191 9.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.056 3.944 10 C -0.172 4.172 11 N -0.176 5.176 12 C -0.162 4.162 13 C -0.108 4.108 14 C 0.031 3.969 15 C -0.130 4.130 16 C -0.106 4.106 17 C -0.179 4.179 18 C 0.084 3.916 19 F -0.112 7.112 20 C -0.100 4.100 21 Cl -0.013 7.013 22 C -0.132 4.132 23 H 0.095 0.905 24 H 0.145 0.855 25 H 0.139 0.861 26 H 0.156 0.844 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.828 -2.117 6.707 9.134 hybrid contribution -0.359 1.471 0.005 1.514 sum -6.187 -0.646 6.712 9.151 Atomic orbital electron populations 1.69778 1.07671 1.29754 1.34245 1.25968 0.94778 1.01615 0.92049 0.86250 0.80603 0.80163 0.79474 1.19283 1.19962 1.18271 1.19546 0.97927 0.90653 1.39809 0.89758 1.18438 0.92066 0.93794 0.90122 1.22586 1.02276 0.88081 1.04248 1.66984 1.07781 1.31655 1.11216 1.21766 0.96402 0.95217 1.02816 1.19291 0.94748 0.96079 1.00712 1.18772 0.91954 0.92538 0.93668 1.21353 0.99084 0.99341 0.93234 1.20984 0.92043 0.97750 0.99782 1.20997 1.00700 1.00677 0.95567 1.17309 0.82991 0.96625 0.94632 1.91500 1.51650 1.77149 1.90888 1.21091 0.95103 1.02910 0.90861 1.98379 1.98464 1.75056 1.29368 1.21752 0.97362 0.95527 0.98510 0.90459 0.85479 0.86107 0.84401 0.84680 0.84425 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.19 10.90 55.55 0.61 -18.59 15 2 C 0.07 1.75 5.19 -17.34 -0.09 1.66 15 3 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 15 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 6 H -0.26 -4.91 7.11 56.52 0.40 -4.50 15 7 C -0.45 -11.11 9.09 -37.73 -0.34 -11.45 15 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 15 9 C 0.06 1.52 5.59 -106.71 -0.60 0.92 15 10 C -0.01 -0.27 10.96 -16.72 -0.18 -0.45 15 11 N -0.47 -11.42 10.32 -12.28 -0.13 -11.55 15 12 C 0.00 -0.09 9.36 -16.97 -0.16 -0.25 15 13 C -0.11 -2.36 5.11 -104.83 -0.54 -2.89 15 14 C 0.03 0.61 5.49 -104.87 -0.58 0.04 15 15 C -0.11 -1.77 9.53 -39.25 -0.37 -2.14 15 16 C -0.09 -1.11 10.03 -39.63 -0.40 -1.51 15 17 C -0.16 -2.09 10.02 -39.46 -0.40 -2.49 15 18 C 0.10 1.66 7.27 -39.44 -0.29 1.37 15 19 F -0.13 -2.10 16.83 2.25 0.04 -2.06 15 20 C -0.07 -1.31 6.29 -39.10 -0.25 -1.55 15 21 Cl -0.04 -0.78 25.65 -51.86 -1.33 -2.11 15 22 C -0.11 -2.57 8.30 -38.24 -0.32 -2.89 15 23 H 0.28 6.29 8.30 -40.82 -0.34 5.96 15 24 H 0.13 2.87 8.06 -52.49 -0.42 2.45 15 25 H 0.12 2.58 7.15 -52.48 -0.38 2.20 15 26 H 0.14 2.07 8.05 -52.49 -0.42 1.65 15 27 H 0.14 1.25 8.06 -52.49 -0.42 0.83 15 28 H 0.14 1.38 8.06 -52.49 -0.42 0.96 15 29 H 0.13 3.23 6.19 -52.49 -0.33 2.91 15 LS Contribution 278.60 15.07 4.20 4.20 Total: -1.00 -26.70 278.60 -8.08 -34.79 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -1.94 Total: 4.56 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -4.50 Total: -21.64 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.48 Total: -30.13 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.33 Total: -2.11 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -26.70 -8.08 -34.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242572849.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.697 kcal (2) G-P(sol) polarization free energy of solvation -26.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds