Wall clock time and date at job start Mon Mar 30 2020 01:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99948 * 2 1 4 4 H 1.48499 * 109.46833 * 270.00433 * 3 2 1 5 5 H 1.48492 * 109.46891 * 30.00111 * 3 2 1 6 6 H 1.48497 * 109.46912 * 150.00018 * 3 2 1 7 7 C 1.39941 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00315 * 163.28576 * 7 2 1 9 9 C 1.41442 * 119.99394 * 343.28590 * 7 2 1 10 10 C 1.40806 * 120.59876 * 155.75331 * 9 7 2 11 11 N 1.31497 * 120.66298 * 180.02562 * 10 9 7 12 12 C 1.31940 * 122.12162 * 359.97438 * 11 10 9 13 13 C 1.39676 * 121.14971 * 359.97438 * 12 11 10 14 14 C 1.48404 * 120.40805 * 180.02562 * 13 12 11 15 15 C 1.39354 * 120.11255 * 129.97978 * 14 13 12 16 16 C 1.38004 * 119.93960 * 180.02562 * 15 14 13 17 17 C 1.38327 * 120.16881 * 359.74618 * 16 15 14 18 18 C 1.38477 * 120.23326 * 0.50879 * 17 16 15 19 19 F 1.35096 * 119.97543 * 179.76458 * 18 17 16 20 20 C 1.38393 * 120.05662 * 359.48988 * 18 17 16 21 21 Cl 1.73593 * 120.08700 * 180.27180 * 20 18 17 22 22 C 1.39173 * 119.18117 * 0.29946 * 13 12 11 23 23 H 0.97003 * 120.00519 * 359.97438 * 1 2 3 24 24 H 1.07996 * 119.66957 * 359.97438 * 10 9 7 25 25 H 1.08006 * 119.42729 * 180.02562 * 12 11 10 26 26 H 1.07998 * 120.03499 * 359.97438 * 15 14 13 27 27 H 1.07994 * 119.91478 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.88403 * 180.27829 * 17 16 15 29 29 H 1.08000 * 120.95279 * 179.70921 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0081 -1.2119 -0.0005 8 1 3.0538 -1.2315 -0.2695 9 6 1.3456 -2.4111 0.3512 10 6 1.8228 -3.6543 -0.1064 11 7 1.2076 -4.7699 0.2195 12 6 0.1295 -4.7801 0.9801 13 6 -0.4134 -3.5943 1.4799 14 6 -1.6263 -3.6250 2.3345 15 6 -1.6437 -2.9411 3.5485 16 6 -2.7734 -2.9726 4.3406 17 6 -3.8908 -3.6771 3.9302 18 6 -3.8794 -4.3636 2.7276 19 9 -4.9720 -5.0539 2.3341 20 6 -2.7517 -4.3385 1.9258 21 17 -2.7391 -5.1929 0.4148 22 6 0.1938 -2.3830 1.1619 23 1 -0.4851 0.8400 0.0004 24 1 2.7023 -3.6919 -0.7319 25 1 -0.3409 -5.7220 1.2211 26 1 -0.7737 -2.3877 3.8697 27 1 -2.7863 -2.4428 5.2816 28 1 -4.7739 -3.6950 4.5517 29 1 -0.2046 -1.4487 1.5289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242572849.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:04 Heat of formation + Delta-G solvation = -21.901014 kcal Electronic energy + Delta-G solvation = -18143.750740 eV Core-core repulsion = 14970.765370 eV Total energy + Delta-G solvation = -3172.985370 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.01515 -40.75001 -39.44861 -37.50295 -35.97827 -33.95980 -32.29410 -31.44062 -30.04031 -27.54954 -24.83051 -24.09959 -23.12908 -22.16660 -19.41721 -18.44255 -17.56054 -17.47661 -17.42358 -16.95919 -16.81479 -16.20311 -15.62021 -15.17279 -14.69110 -14.47722 -14.11719 -13.88795 -13.61606 -13.34746 -13.23561 -13.04380 -12.80082 -12.60967 -12.48104 -12.23233 -11.96700 -11.58103 -11.21216 -10.53476 -10.12549 -9.75646 -9.73375 -9.23331 -8.70599 -6.46225 -0.17197 -0.02179 0.80557 1.02368 1.04962 1.41005 1.50160 1.56883 2.19022 2.45052 2.69666 3.01720 3.58375 3.63887 3.92994 3.97062 4.14760 4.23335 4.46701 4.64814 4.76828 4.78778 4.95093 4.97133 5.16075 5.17133 5.30263 5.35586 5.70301 5.74437 5.88303 5.97118 6.45094 6.73148 6.74902 7.66302 8.23394 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.005936 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.780897 B = 4716.186604 C = 5407.040399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.039 3.961 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.479 4.479 8 H 0.087 0.913 9 C 0.038 3.962 10 C -0.034 4.034 11 N -0.482 5.482 12 C -0.013 4.013 13 C -0.093 4.093 14 C -0.004 4.004 15 C -0.115 4.115 16 C -0.067 4.067 17 C -0.137 4.137 18 C 0.095 3.905 19 F -0.134 7.134 20 C -0.089 4.089 21 Cl -0.061 7.061 22 C -0.125 4.125 23 H 0.293 0.707 24 H 0.136 0.864 25 H 0.133 0.867 26 H 0.141 0.859 27 H 0.183 0.817 28 H 0.180 0.820 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 0.003 9.354 11.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.177 4.177 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.508 4.508 8 H 0.105 0.895 9 C 0.034 3.966 10 C -0.194 4.194 11 N -0.189 5.189 12 C -0.171 4.171 13 C -0.095 4.095 14 C -0.005 4.005 15 C -0.133 4.133 16 C -0.085 4.085 17 C -0.156 4.156 18 C 0.075 3.925 19 F -0.113 7.113 20 C -0.116 4.116 21 Cl -0.032 7.032 22 C -0.150 4.150 23 H 0.104 0.896 24 H 0.153 0.847 25 H 0.150 0.850 26 H 0.159 0.841 27 H 0.200 0.800 28 H 0.197 0.803 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.048 -0.755 8.869 11.354 hybrid contribution -0.110 0.994 -0.575 1.154 sum -7.158 0.239 8.294 10.959 Atomic orbital electron populations 1.69828 1.09108 1.31163 1.34226 1.26802 0.95452 1.04629 0.90858 0.85142 0.79204 0.75534 0.79557 1.18898 1.18851 1.17927 1.19835 0.98339 0.91532 1.41073 0.89467 1.18766 0.92834 0.94400 0.90633 1.22738 1.03133 0.88177 1.05372 1.66959 1.08448 1.31786 1.11737 1.22023 0.96172 0.96129 1.02808 1.19477 0.95324 0.94916 0.99773 1.18700 0.91195 0.95532 0.95084 1.21541 1.00652 0.98622 0.92515 1.21461 0.90152 0.96395 1.00492 1.21526 1.02020 0.97927 0.94112 1.17538 0.82298 0.97291 0.95408 1.91499 1.51422 1.77291 1.91070 1.21224 0.96098 1.03514 0.90775 1.98364 1.98523 1.75542 1.30777 1.21742 0.97916 0.96000 0.99375 0.89629 0.84675 0.84999 0.84118 0.79957 0.80256 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.09 10.90 21.83 0.24 -39.85 15 2 C 0.04 1.83 5.19 85.26 0.44 2.27 15 3 Si 0.99 35.26 29.59 68.60 2.03 37.29 15 4 H -0.26 -9.27 7.11 99.48 0.71 -8.56 15 5 H -0.26 -8.94 7.11 99.48 0.71 -8.23 15 6 H -0.26 -8.94 7.11 99.48 0.71 -8.24 15 7 C -0.48 -24.23 9.09 23.47 0.21 -24.02 15 8 H 0.09 4.19 7.90 -2.91 -0.02 4.17 15 9 C 0.04 1.99 5.59 -21.22 -0.12 1.87 15 10 C -0.03 -1.73 10.96 85.37 0.94 -0.79 15 11 N -0.48 -24.25 10.32 -192.77 -1.99 -26.24 15 12 C -0.01 -0.62 9.36 85.02 0.80 0.17 15 13 C -0.09 -4.22 5.11 -20.00 -0.10 -4.32 15 14 C 0.00 -0.13 5.49 -20.03 -0.11 -0.24 15 15 C -0.11 -3.41 9.53 22.48 0.21 -3.19 15 16 C -0.07 -1.41 10.03 22.24 0.22 -1.18 15 17 C -0.14 -2.95 10.02 22.35 0.22 -2.73 15 18 C 0.09 2.78 7.27 22.36 0.16 2.95 15 19 F -0.13 -3.96 16.83 44.97 0.76 -3.20 15 20 C -0.09 -3.16 6.29 22.58 0.14 -3.02 15 21 Cl -0.06 -2.31 25.65 -2.72 -0.07 -2.38 15 22 C -0.12 -6.23 8.30 23.14 0.19 -6.03 15 23 H 0.29 12.90 8.30 -92.71 -0.77 12.13 15 24 H 0.14 6.40 8.06 -2.91 -0.02 6.38 15 25 H 0.13 5.77 7.15 -2.91 -0.02 5.75 15 26 H 0.14 4.03 8.05 -2.91 -0.02 4.01 15 27 H 0.18 2.16 8.06 -2.91 -0.02 2.14 15 28 H 0.18 2.43 8.06 -2.91 -0.02 2.41 15 29 H 0.12 6.30 6.19 -2.91 -0.02 6.28 15 Total: -1.00 -59.78 278.60 5.38 -54.41 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.20 Total: 18.24 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 3.21 Total: -38.27 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -1.75 Total: -66.09 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.76 Total: -3.20 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.07 Total: -2.38 kcal Total: -59.78 5.38 -54.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242572849.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.508 kcal (2) G-P(sol) polarization free energy of solvation -59.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds