Wall clock time and date at job start Mon Mar 30 2020 01:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86804 * 120.00290 * 2 1 4 4 H 1.48502 * 109.47067 * 269.99650 * 3 2 1 5 5 H 1.48499 * 109.47072 * 29.99759 * 3 2 1 6 6 H 1.48496 * 109.47382 * 149.99671 * 3 2 1 7 7 C 1.40181 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00354 * 193.93099 * 7 2 1 9 9 C 1.40923 * 119.99671 * 13.93934 * 7 2 1 10 10 C 1.41119 * 121.10936 * 24.56741 * 9 7 2 11 11 C 1.36481 * 119.10991 * 180.31967 * 10 9 7 12 12 N 1.32217 * 121.50665 * 359.68026 * 11 10 9 13 13 C 1.31667 * 122.50586 * 0.02562 * 12 11 10 14 14 C 1.39324 * 120.66140 * 0.02621 * 13 12 11 15 15 C 1.47817 * 120.78644 * 179.97438 * 14 13 12 16 16 C 1.39712 * 120.15040 * 65.24230 * 15 14 13 17 17 C 1.37876 * 119.91131 * 180.20942 * 16 15 14 18 18 C 1.38420 * 120.20611 * 359.52121 * 17 16 15 19 19 C 1.38554 * 120.29499 * 0.27523 * 18 17 16 20 20 F 1.35103 * 119.95435 * 179.97438 * 19 18 17 21 21 C 1.38300 * 120.08653 * 359.95495 * 19 18 17 22 22 Cl 1.73597 * 120.09948 * 180.02562 * 21 19 18 23 23 H 0.97006 * 119.99657 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.44721 * 0.02562 * 10 9 7 25 25 H 1.07993 * 119.24964 * 179.70596 * 11 10 9 26 26 H 1.08001 * 119.67048 * 179.97438 * 13 12 11 27 27 H 1.08006 * 120.04566 * 0.02562 * 16 15 14 28 28 H 1.08007 * 119.89995 * 179.79483 * 17 16 15 29 29 H 1.08000 * 119.85685 * 180.24672 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6527 0.7000 6 1 3.5384 1.4402 0.7001 7 6 2.0077 -1.2140 0.0005 8 1 3.0638 -1.2277 0.2257 9 6 1.3342 -2.4165 -0.2929 10 6 0.1529 -2.4210 -1.0649 11 6 -0.4698 -3.6085 -1.3190 12 7 0.0120 -4.7526 -0.8639 13 6 1.1118 -4.8205 -0.1432 14 6 1.8250 -3.6667 0.1750 15 6 3.0598 -3.7396 0.9844 16 6 4.1896 -4.3911 0.4836 17 6 5.3374 -4.4599 1.2445 18 6 5.3770 -3.8769 2.4993 19 6 4.2628 -3.2250 3.0026 20 9 4.3090 -2.6588 4.2284 21 6 3.1037 -3.1528 2.2517 22 17 1.7077 -2.3355 2.8817 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2556 -1.4965 -1.4456 25 1 -1.3766 -3.6140 -1.9055 26 1 1.4641 -5.7800 0.2055 27 1 4.1632 -4.8429 -0.4971 28 1 6.2097 -4.9665 0.8585 29 1 6.2803 -3.9308 3.0889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242573346.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:10 Heat of formation + Delta-G solvation = -19.507954 kcal Electronic energy + Delta-G solvation = -18664.938056 eV Core-core repulsion = 15492.056457 eV Total energy + Delta-G solvation = -3172.881599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.90679 -40.61014 -39.25728 -37.17665 -36.02357 -33.70973 -32.03475 -31.25719 -29.97259 -27.82423 -24.63623 -23.71304 -23.10529 -22.02654 -19.48090 -18.49407 -17.55208 -17.29392 -17.25709 -16.70766 -16.30622 -16.06789 -15.73706 -15.03809 -14.56148 -14.39935 -14.13662 -13.92559 -13.73452 -13.21709 -13.01770 -12.92050 -12.81815 -12.45490 -12.29005 -11.99887 -11.82525 -11.48744 -11.19305 -10.12314 -9.89241 -9.64730 -9.55115 -9.22736 -8.67722 -6.50687 0.11969 0.15192 0.90726 1.02030 1.34640 1.38065 1.45131 1.53449 2.14156 2.61755 2.78801 3.18994 3.71660 3.81438 4.03594 4.13238 4.23576 4.38292 4.50146 4.76939 4.98835 4.99478 5.08719 5.09479 5.24392 5.34467 5.43927 5.54298 5.62374 5.86846 5.96534 6.20169 6.53195 6.81500 6.84219 7.74925 8.21302 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.009936 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.025044 B = 2817.340936 C = 3884.114469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.049 3.951 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.437 4.437 8 H 0.072 0.928 9 C 0.132 3.868 10 C -0.229 4.229 11 C 0.077 3.923 12 N -0.592 5.592 13 C 0.127 3.873 14 C -0.244 4.244 15 C 0.030 3.970 16 C -0.122 4.122 17 C -0.073 4.073 18 C -0.150 4.150 19 C 0.080 3.920 20 F -0.142 7.142 21 C -0.082 4.082 22 Cl -0.063 7.063 23 H 0.291 0.709 24 H 0.118 0.882 25 H 0.137 0.863 26 H 0.145 0.855 27 H 0.146 0.854 28 H 0.180 0.820 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 -3.120 2.372 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.170 4.170 3 Si 0.783 3.217 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.090 0.910 9 C 0.124 3.876 10 C -0.252 4.252 11 C -0.070 4.070 12 N -0.307 5.307 13 C -0.030 4.030 14 C -0.249 4.249 15 C 0.029 3.971 16 C -0.140 4.140 17 C -0.091 4.091 18 C -0.168 4.168 19 C 0.060 3.940 20 F -0.121 7.121 21 C -0.110 4.110 22 Cl -0.034 7.034 23 H 0.102 0.898 24 H 0.136 0.864 25 H 0.155 0.845 26 H 0.163 0.837 27 H 0.163 0.837 28 H 0.197 0.803 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.029 -3.625 2.262 9.990 hybrid contribution -0.043 1.990 0.598 2.079 sum 8.986 -1.635 2.860 9.571 Atomic orbital electron populations 1.69763 1.08787 1.30810 1.33043 1.26607 0.95310 1.03953 0.91105 0.85481 0.79433 0.76914 0.79905 1.17974 1.19293 1.18551 1.19488 0.96467 0.90996 1.39741 0.91019 1.17917 0.90607 0.92002 0.87026 1.21970 1.00563 0.98354 1.04286 1.22011 0.98609 0.88607 0.97788 1.67379 1.15904 1.29256 1.18116 1.22414 0.90634 0.96543 0.93404 1.19500 1.00642 0.94868 1.09910 1.18526 0.94471 0.94217 0.89924 1.21633 0.91505 0.99744 1.01137 1.21385 0.98531 0.96989 0.92172 1.21435 0.97151 0.99875 0.98354 1.17695 0.94673 1.00076 0.81535 1.91464 1.96921 1.83235 1.40486 1.21461 0.89440 1.03598 0.96491 1.98365 1.41185 1.77553 1.86266 0.89763 0.86422 0.84530 0.83728 0.83650 0.80309 0.81152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.08 10.80 21.86 0.24 -38.85 15 2 C 0.05 2.33 5.25 85.34 0.45 2.77 15 3 Si 0.96 36.75 29.58 68.60 2.03 38.78 15 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 6 H -0.26 -10.04 7.11 99.48 0.71 -9.34 15 7 C -0.44 -21.60 6.84 23.40 0.16 -21.44 15 8 H 0.07 3.56 7.17 -2.91 -0.02 3.54 15 9 C 0.13 6.63 5.10 -20.92 -0.11 6.52 15 10 C -0.23 -11.55 8.73 22.57 0.20 -11.36 15 11 C 0.08 3.65 11.09 84.22 0.93 4.59 15 12 N -0.59 -27.81 10.32 -196.19 -2.02 -29.83 15 13 C 0.13 5.62 10.92 84.98 0.93 6.55 15 14 C -0.24 -11.04 4.72 -19.49 -0.09 -11.13 15 15 C 0.03 1.18 4.49 -20.03 -0.09 1.09 15 16 C -0.12 -3.64 9.76 22.54 0.22 -3.42 15 17 C -0.07 -1.65 10.03 22.23 0.22 -1.43 15 18 C -0.15 -3.72 10.02 22.39 0.22 -3.50 15 19 C 0.08 2.71 7.27 22.36 0.16 2.88 15 20 F -0.14 -4.93 16.83 44.97 0.76 -4.17 15 21 C -0.08 -3.28 5.76 22.64 0.13 -3.15 15 22 Cl -0.06 -2.79 25.85 -2.72 -0.07 -2.86 15 23 H 0.29 12.96 8.29 -92.70 -0.77 12.19 15 24 H 0.12 6.09 6.14 -2.91 -0.02 6.07 15 25 H 0.14 5.69 8.06 -2.91 -0.02 5.67 15 26 H 0.15 5.48 8.06 -2.91 -0.02 5.46 15 27 H 0.15 3.88 8.06 -2.91 -0.02 3.86 15 28 H 0.18 2.36 8.06 -2.91 -0.02 2.34 15 29 H 0.17 2.97 8.06 -2.91 -0.02 2.95 15 Total: -1.00 -58.47 276.56 5.46 -53.00 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.20 Total: 14.94 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.34 Total: -31.02 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.79 Total: -68.68 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.76 Total: -4.17 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.07 Total: -2.86 kcal Total: -58.47 5.46 -53.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242573346.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.496 kcal (2) G-P(sol) polarization free energy of solvation -58.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds