Wall clock time and date at job start Mon Mar 30 2020 01:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86800 * 119.99775 * 2 1 4 4 H 1.48506 * 109.46774 * 239.99241 * 3 2 1 5 5 H 1.48497 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47280 * 119.99716 * 3 2 1 7 7 C 1.40052 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99483 * 192.63563 * 7 2 1 9 9 C 1.41518 * 119.99982 * 12.63748 * 7 2 1 10 10 C 1.41149 * 120.98521 * 206.49927 * 9 7 2 11 11 C 1.37734 * 119.07555 * 179.97438 * 10 9 7 12 12 N 1.31929 * 121.15834 * 0.02562 * 11 10 9 13 13 C 1.32788 * 122.20620 * 359.97438 * 12 11 10 14 14 C 1.48342 * 119.61821 * 179.97438 * 13 12 11 15 15 C 1.39383 * 120.11983 * 132.12012 * 14 13 12 16 16 C 1.37987 * 119.93814 * 179.72787 * 15 14 13 17 17 C 1.38335 * 120.17732 * 0.02562 * 16 15 14 18 18 C 1.38475 * 120.23733 * 359.97438 * 17 16 15 19 19 F 1.35098 * 119.97073 * 180.02562 * 18 17 16 20 20 C 1.38396 * 120.05740 * 0.02562 * 18 17 16 21 21 Cl 1.73596 * 120.08704 * 180.02562 * 20 18 17 22 22 C 1.38921 * 120.77314 * 0.25819 * 13 12 11 23 23 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.46296 * 359.97438 * 10 9 7 25 25 H 1.08002 * 119.42141 * 180.02562 * 11 10 9 26 26 H 1.08002 * 120.03265 * 359.75253 * 15 14 13 27 27 H 1.08006 * 119.91199 * 180.02562 * 16 15 14 28 28 H 1.08003 * 119.88463 * 179.97438 * 17 16 15 29 29 H 1.07996 * 120.61952 * 179.72387 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2762 2.7464 -0.0006 6 1 3.0950 1.6965 1.2126 7 6 2.0076 -1.2129 0.0005 8 1 3.0680 -1.2240 0.2052 9 6 1.3257 -2.4237 -0.2671 10 6 1.7998 -3.6523 0.2411 11 6 1.1050 -4.8070 -0.0432 12 7 0.0104 -4.7813 -0.7792 13 6 -0.4784 -3.6535 -1.2815 14 6 -1.7135 -3.6911 -2.1023 15 6 -2.7488 -2.7927 -1.8498 16 6 -3.8937 -2.8273 -2.6192 17 6 -4.0173 -3.7519 -3.6407 18 6 -2.9933 -4.6479 -3.8979 19 9 -3.1195 -5.5483 -4.8972 20 6 -1.8407 -4.6218 -3.1323 21 17 -0.5563 -5.7443 -3.4546 22 6 0.1566 -2.4394 -1.0523 23 1 -0.4850 0.8400 -0.0004 24 1 2.6949 -3.6864 0.8445 25 1 1.4625 -5.7501 0.3431 26 1 -2.6548 -2.0698 -1.0529 27 1 -4.6955 -2.1307 -2.4234 28 1 -4.9157 -3.7751 -4.2397 29 1 -0.2406 -1.5242 -1.4658 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242573904.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:00 Heat of formation + Delta-G solvation = -20.655830 kcal Electronic energy + Delta-G solvation = -18135.623478 eV Core-core repulsion = 14962.692103 eV Total energy + Delta-G solvation = -3172.931375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.99192 -40.70548 -39.36331 -37.38092 -35.99559 -33.50183 -32.41513 -31.42916 -29.95388 -27.85581 -24.82708 -24.01379 -23.10919 -22.13459 -19.59094 -18.38997 -17.51660 -17.42643 -17.26199 -16.79053 -16.18829 -16.05703 -15.90761 -15.22691 -14.70621 -14.39731 -14.31442 -14.03899 -13.76250 -13.18976 -13.04262 -12.87465 -12.69991 -12.60119 -12.44063 -12.00052 -11.90051 -11.64506 -11.24952 -10.29212 -9.97325 -9.79437 -9.69355 -9.20623 -8.66596 -6.56953 -0.15077 0.00461 0.90833 0.99793 1.13905 1.40047 1.50692 1.56697 2.18949 2.45364 2.78336 3.00329 3.48845 3.64740 3.89791 3.97074 4.23680 4.33785 4.50403 4.76995 4.83817 4.93631 4.96808 4.99257 5.19540 5.22765 5.38300 5.42069 5.50035 5.74197 5.91362 6.16970 6.48285 6.77182 6.80732 7.65731 8.26816 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.005903 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.247517 B = 4741.834137 C = 5579.023218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.040 3.960 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.489 4.489 8 H 0.082 0.918 9 C 0.097 3.903 10 C -0.281 4.281 11 C 0.099 3.901 12 N -0.555 5.555 13 C 0.129 3.871 14 C -0.005 4.005 15 C -0.109 4.109 16 C -0.072 4.072 17 C -0.132 4.132 18 C 0.089 3.911 19 F -0.134 7.134 20 C -0.074 4.074 21 Cl -0.054 7.054 22 C -0.198 4.198 23 H 0.293 0.707 24 H 0.114 0.886 25 H 0.153 0.847 26 H 0.136 0.864 27 H 0.182 0.818 28 H 0.182 0.818 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 -0.617 -5.157 9.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.177 4.177 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.520 4.520 8 H 0.100 0.900 9 C 0.089 3.911 10 C -0.304 4.304 11 C -0.057 4.057 12 N -0.269 5.269 13 C -0.002 4.002 14 C -0.007 4.007 15 C -0.128 4.128 16 C -0.089 4.089 17 C -0.150 4.150 18 C 0.069 3.931 19 F -0.112 7.112 20 C -0.102 4.102 21 Cl -0.025 7.025 22 C -0.221 4.221 23 H 0.104 0.896 24 H 0.132 0.868 25 H 0.171 0.829 26 H 0.154 0.846 27 H 0.200 0.800 28 H 0.200 0.800 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.208 -1.417 -5.387 9.920 hybrid contribution 1.384 0.961 0.258 1.704 sum -6.824 -0.457 -5.130 8.549 Atomic orbital electron populations 1.69742 1.08825 1.31097 1.34271 1.26753 0.95668 1.04360 0.90905 0.85202 0.78809 0.75474 0.79989 1.18688 1.18787 1.18427 1.19849 0.96880 0.91340 1.43942 0.90033 1.18159 0.91524 0.93479 0.87918 1.22185 1.05087 0.94252 1.08876 1.22325 0.91123 0.97585 0.94618 1.67542 1.15294 1.28583 1.15444 1.19418 0.94031 0.89845 0.96918 1.18598 0.94125 0.94615 0.93327 1.21523 0.92656 0.97716 1.00873 1.21420 0.97314 0.97651 0.92540 1.21531 0.98668 0.94599 1.00221 1.17531 0.94601 0.92312 0.88681 1.91495 1.96033 1.65638 1.58072 1.21192 0.91707 0.97164 1.00114 1.98347 1.49611 1.59987 1.94576 1.22143 1.00154 0.96707 1.03104 0.89562 0.86785 0.82937 0.84635 0.80048 0.80047 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.20 10.88 21.84 0.24 -38.96 15 2 C 0.04 1.90 5.26 85.30 0.45 2.35 15 3 Si 0.98 35.81 29.58 68.60 2.03 37.84 15 4 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 5 H -0.26 -8.96 7.11 99.48 0.71 -8.25 15 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 7 C -0.49 -25.22 9.12 23.52 0.21 -25.00 15 8 H 0.08 4.03 7.88 -2.91 -0.02 4.01 15 9 C 0.10 5.12 5.58 -21.12 -0.12 5.00 15 10 C -0.28 -13.60 9.90 22.87 0.23 -13.38 15 11 C 0.10 4.50 11.15 84.56 0.94 5.44 15 12 N -0.55 -26.47 8.78 -185.37 -1.63 -28.10 15 13 C 0.13 6.18 5.86 41.85 0.25 6.43 15 14 C 0.00 -0.20 5.60 -20.03 -0.11 -0.31 15 15 C -0.11 -3.61 9.44 22.49 0.21 -3.40 15 16 C -0.07 -1.67 10.03 22.23 0.22 -1.45 15 17 C -0.13 -3.04 10.02 22.35 0.22 -2.81 15 18 C 0.09 2.75 7.27 22.36 0.16 2.91 15 19 F -0.13 -4.08 16.83 44.97 0.76 -3.32 15 20 C -0.07 -2.78 6.33 22.59 0.14 -2.64 15 21 Cl -0.05 -2.13 26.60 -2.72 -0.07 -2.20 15 22 C -0.20 -10.19 8.14 23.07 0.19 -10.00 15 23 H 0.29 12.62 8.29 -92.71 -0.77 11.85 15 24 H 0.11 5.06 8.06 -2.91 -0.02 5.03 15 25 H 0.15 5.82 8.06 -2.91 -0.02 5.80 15 26 H 0.14 4.70 7.99 -2.91 -0.02 4.68 15 27 H 0.18 2.63 8.06 -2.91 -0.02 2.61 15 28 H 0.18 2.66 8.06 -2.91 -0.02 2.63 15 29 H 0.12 6.27 6.20 -2.91 -0.02 6.25 15 Total: -1.00 -59.80 280.29 5.52 -54.29 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 1.19 Total: 17.32 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 3.00 Total: -36.86 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -1.39 Total: -67.06 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.76 Total: -3.32 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.07 Total: -2.20 kcal Total: -59.80 5.52 -54.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242573904.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.629 kcal (2) G-P(sol) polarization free energy of solvation -59.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds