Wall clock time and date at job start Mon Mar 30 2020 01:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46646 * 240.00090 * 3 2 1 5 5 H 1.48497 * 109.46782 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00057 * 3 2 1 7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41421 * 119.99975 * 0.27903 * 7 2 1 10 10 C 1.40470 * 119.77896 * 179.45022 * 9 7 2 11 11 C 1.39322 * 118.83611 * 179.73335 * 10 9 7 12 12 C 1.48369 * 120.82260 * 180.23372 * 11 10 9 13 13 C 1.39372 * 120.11627 * 130.30218 * 12 11 10 14 14 C 1.37992 * 119.94092 * 180.02562 * 13 12 11 15 15 C 1.38334 * 120.16987 * 359.97381 * 14 13 12 16 16 C 1.38472 * 120.23954 * 0.02562 * 15 14 13 17 17 F 1.35099 * 119.97180 * 179.97438 * 16 15 14 18 18 C 1.38394 * 120.05595 * 359.72756 * 16 15 14 19 19 Cl 1.73606 * 120.08556 * 180.29686 * 18 16 15 20 20 C 1.40042 * 118.35597 * 0.52826 * 11 10 9 21 21 C 1.38508 * 119.42164 * 359.73312 * 20 11 10 22 22 N 1.31479 * 121.14411 * 359.97438 * 21 20 11 23 23 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.58286 * 359.97234 * 10 9 7 25 25 H 1.07994 * 120.02780 * 359.97438 * 13 12 11 26 26 H 1.07995 * 119.91328 * 180.02562 * 14 13 12 27 27 H 1.08011 * 119.88184 * 180.02562 * 15 14 13 28 28 H 1.08003 * 120.29171 * 179.70774 * 20 11 10 29 29 H 1.07996 * 119.42230 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3005 -2.4375 -0.0049 10 6 2.0076 -3.6512 -0.0160 11 6 1.2913 -4.8462 -0.0155 12 6 1.9932 -6.1533 -0.0218 13 6 1.6413 -7.1405 0.8969 14 6 2.2969 -8.3547 0.8882 15 6 3.3026 -8.5952 -0.0307 16 6 3.6581 -7.6195 -0.9468 17 9 4.6414 -7.8600 -1.8415 18 6 3.0035 -6.4002 -0.9500 19 17 3.4433 -5.1793 -2.1032 20 6 -0.1077 -4.7830 -0.0152 21 6 -0.7330 -3.5472 -0.0099 22 7 -0.0359 -2.4324 -0.0045 23 1 -0.4849 0.8400 -0.0004 24 1 3.0875 -3.6580 -0.0209 25 1 0.8568 -6.9550 1.6156 26 1 2.0236 -9.1195 1.6000 27 1 3.8124 -9.5474 -0.0337 28 1 -0.6940 -5.6901 -0.0196 29 1 -1.8119 -3.4985 -0.0092 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242574045.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:08 Heat of formation + Delta-G solvation = -11.289715 kcal Electronic energy + Delta-G solvation = -17983.617757 eV Core-core repulsion = 14811.092527 eV Total energy + Delta-G solvation = -3172.525230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.02403 -40.65641 -39.38808 -37.49183 -35.58724 -33.89427 -31.96493 -31.41862 -30.28971 -27.64207 -24.89266 -23.93499 -22.97742 -22.28639 -19.55765 -18.34155 -17.52635 -17.45950 -17.18094 -16.82685 -16.31209 -16.03264 -15.81988 -15.23504 -14.63900 -14.48091 -14.10983 -13.98415 -13.78732 -13.10892 -12.99240 -12.87825 -12.81762 -12.52562 -12.40262 -12.24107 -11.78603 -11.70648 -11.23841 -10.49170 -9.74372 -9.57984 -9.51777 -9.41933 -8.29993 -6.51920 -0.15818 -0.02471 0.90641 1.06036 1.13762 1.38734 1.50709 1.52925 2.21782 2.46719 2.83327 3.01016 3.57300 3.84672 3.95579 4.00097 4.21789 4.25215 4.46825 4.66341 4.79371 4.86437 4.95606 4.98422 5.15110 5.21061 5.29055 5.47640 5.58616 5.74666 5.82353 6.10525 6.26401 6.71217 6.94930 8.18647 8.44606 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.005314 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.194840 B = 5268.025419 C = 5976.831823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.026 3.974 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.471 4.471 8 H 0.083 0.917 9 C 0.227 3.773 10 C -0.249 4.249 11 C -0.004 4.004 12 C -0.013 4.013 13 C -0.107 4.107 14 C -0.067 4.067 15 C -0.136 4.136 16 C 0.091 3.909 17 F -0.136 7.136 18 C -0.090 4.090 19 Cl -0.063 7.063 20 C -0.285 4.285 21 C 0.104 3.896 22 N -0.518 5.518 23 H 0.279 0.721 24 H 0.099 0.901 25 H 0.152 0.848 26 H 0.187 0.813 27 H 0.179 0.821 28 H 0.131 0.869 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -14.254 1.862 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.195 4.195 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.503 4.503 8 H 0.101 0.899 9 C 0.102 3.898 10 C -0.272 4.272 11 C -0.011 4.011 12 C -0.014 4.014 13 C -0.126 4.126 14 C -0.085 4.085 15 C -0.154 4.154 16 C 0.071 3.929 17 F -0.115 7.115 18 C -0.118 4.118 19 Cl -0.034 7.034 20 C -0.308 4.308 21 C -0.060 4.060 22 N -0.231 5.231 23 H 0.090 0.910 24 H 0.117 0.883 25 H 0.170 0.830 26 H 0.204 0.796 27 H 0.196 0.804 28 H 0.148 0.852 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.390 -13.192 1.718 13.728 hybrid contribution 0.920 0.385 -0.610 1.169 sum 4.310 -12.807 1.108 13.558 Atomic orbital electron populations 1.70208 1.08721 1.29129 1.29680 1.26926 0.95734 1.04321 0.92548 0.85261 0.78723 0.75726 0.80006 1.18641 1.18989 1.18201 1.19910 0.94542 0.90625 1.45202 0.89883 1.18885 0.88792 0.92857 0.89301 1.21847 0.98595 0.92652 1.14082 1.18684 0.93506 0.90782 0.98106 1.18796 0.93599 0.94352 0.94687 1.21587 1.00834 0.92391 0.97756 1.21510 0.92878 0.96671 0.97445 1.21567 0.99856 0.99427 0.94589 1.17594 0.89528 0.93558 0.92227 1.91500 1.59314 1.94489 1.66183 1.21323 1.01391 0.91419 0.97639 1.98386 1.92031 1.54669 1.58354 1.21594 0.93111 0.98595 1.17471 1.22919 0.99945 0.88793 0.94333 1.68647 1.07694 1.28789 1.18020 0.91011 0.88263 0.83005 0.79622 0.80366 0.85155 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.42 11.46 21.84 0.25 -41.17 15 2 C 0.03 1.37 5.50 85.29 0.47 1.84 15 3 Si 0.98 39.12 29.56 68.60 2.03 41.14 15 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 15 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 7 C -0.47 -26.34 9.14 23.49 0.21 -26.12 15 8 H 0.08 4.40 7.85 -2.91 -0.02 4.38 15 9 C 0.23 12.77 6.55 40.19 0.26 13.04 15 10 C -0.25 -12.43 8.02 23.07 0.19 -12.25 15 11 C 0.00 -0.19 5.12 -19.88 -0.10 -0.29 15 12 C -0.01 -0.47 5.51 -20.03 -0.11 -0.58 15 13 C -0.11 -2.70 9.55 22.48 0.21 -2.49 15 14 C -0.07 -1.17 10.03 22.23 0.22 -0.95 15 15 C -0.14 -2.61 10.02 22.35 0.22 -2.38 15 16 C 0.09 2.54 7.27 22.36 0.16 2.70 15 17 F -0.14 -3.93 16.83 44.97 0.76 -3.17 15 18 C -0.09 -3.09 6.30 22.59 0.14 -2.95 15 19 Cl -0.06 -2.44 25.71 -2.72 -0.07 -2.51 15 20 C -0.29 -11.99 9.66 22.77 0.22 -11.78 15 21 C 0.10 4.94 11.17 84.81 0.95 5.89 15 22 N -0.52 -29.13 7.85 -189.37 -1.49 -30.62 15 23 H 0.28 13.84 8.29 -92.71 -0.77 13.07 15 24 H 0.10 4.88 7.22 -2.91 -0.02 4.86 15 25 H 0.15 3.39 8.06 -2.91 -0.02 3.37 15 26 H 0.19 1.49 8.06 -2.91 -0.02 1.47 15 27 H 0.18 2.08 8.06 -2.91 -0.02 2.05 15 28 H 0.13 4.52 8.06 -2.91 -0.02 4.49 15 29 H 0.14 5.87 8.06 -2.91 -0.02 5.85 15 Total: -1.00 -66.74 280.21 5.72 -61.01 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.19 Total: 11.62 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 3.05 Total: -36.31 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.24 Total: -71.78 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.76 Total: -3.17 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.14 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.07 Total: -2.51 kcal Total: -66.74 5.72 -61.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242574045.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.724 kcal (2) G-P(sol) polarization free energy of solvation -66.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds