Wall clock time and date at job start Mon Mar 30 2020 01:31:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30744 * 1
3 3 Si 1.86803 * 119.99895 * 2 1
4 4 H 1.48498 * 109.46646 * 240.00090 * 3 2 1
5 5 H 1.48497 * 109.46782 * 359.97438 * 3 2 1
6 6 H 1.48493 * 109.47374 * 120.00057 * 3 2 1
7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1
9 9 C 1.41421 * 119.99975 * 0.27903 * 7 2 1
10 10 C 1.40470 * 119.77896 * 179.45022 * 9 7 2
11 11 C 1.39322 * 118.83611 * 179.73335 * 10 9 7
12 12 C 1.48369 * 120.82260 * 180.23372 * 11 10 9
13 13 C 1.39372 * 120.11627 * 130.30218 * 12 11 10
14 14 C 1.37992 * 119.94092 * 180.02562 * 13 12 11
15 15 C 1.38334 * 120.16987 * 359.97381 * 14 13 12
16 16 C 1.38472 * 120.23954 * 0.02562 * 15 14 13
17 17 F 1.35099 * 119.97180 * 179.97438 * 16 15 14
18 18 C 1.38394 * 120.05595 * 359.72756 * 16 15 14
19 19 Cl 1.73606 * 120.08556 * 180.29686 * 18 16 15
20 20 C 1.40042 * 118.35597 * 0.52826 * 11 10 9
21 21 C 1.38508 * 119.42164 * 359.73312 * 20 11 10
22 22 N 1.31479 * 121.14411 * 359.97438 * 21 20 11
23 23 H 0.96991 * 119.99866 * 0.02562 * 1 2 3
24 24 H 1.07998 * 120.58286 * 359.97234 * 10 9 7
25 25 H 1.07994 * 120.02780 * 359.97438 * 13 12 11
26 26 H 1.07995 * 119.91328 * 180.02562 * 14 13 12
27 27 H 1.08011 * 119.88184 * 180.02562 * 15 14 13
28 28 H 1.08003 * 120.29171 * 179.70774 * 20 11 10
29 29 H 1.07996 * 119.42230 * 180.02562 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6178 0.0000
4 1 3.0951 1.6964 -1.2125
5 1 1.2764 2.7464 -0.0006
6 1 3.0952 1.6965 1.2124
7 6 2.0076 -1.2127 0.0005
8 1 3.0877 -1.2127 0.0001
9 6 1.3005 -2.4375 -0.0049
10 6 2.0076 -3.6512 -0.0160
11 6 1.2913 -4.8462 -0.0155
12 6 1.9932 -6.1533 -0.0218
13 6 1.6413 -7.1405 0.8969
14 6 2.2969 -8.3547 0.8882
15 6 3.3026 -8.5952 -0.0307
16 6 3.6581 -7.6195 -0.9468
17 9 4.6414 -7.8600 -1.8415
18 6 3.0035 -6.4002 -0.9500
19 17 3.4433 -5.1793 -2.1032
20 6 -0.1077 -4.7830 -0.0152
21 6 -0.7330 -3.5472 -0.0099
22 7 -0.0359 -2.4324 -0.0045
23 1 -0.4849 0.8400 -0.0004
24 1 3.0875 -3.6580 -0.0209
25 1 0.8568 -6.9550 1.6156
26 1 2.0236 -9.1195 1.6000
27 1 3.8124 -9.5474 -0.0337
28 1 -0.6940 -5.6901 -0.0196
29 1 -1.8119 -3.4985 -0.0092
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001242574045.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:31:08
Heat of formation + Delta-G solvation = -11.289715 kcal
Electronic energy + Delta-G solvation = -17983.617757 eV
Core-core repulsion = 14811.092527 eV
Total energy + Delta-G solvation = -3172.525230 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 277.036 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-50.02403 -40.65641 -39.38808 -37.49183 -35.58724 -33.89427 -31.96493 -31.41862
-30.28971 -27.64207 -24.89266 -23.93499 -22.97742 -22.28639 -19.55765 -18.34155
-17.52635 -17.45950 -17.18094 -16.82685 -16.31209 -16.03264 -15.81988 -15.23504
-14.63900 -14.48091 -14.10983 -13.98415 -13.78732 -13.10892 -12.99240 -12.87825
-12.81762 -12.52562 -12.40262 -12.24107 -11.78603 -11.70648 -11.23841 -10.49170
-9.74372 -9.57984 -9.51777 -9.41933 -8.29993 -6.51920 -0.15818 -0.02471
0.90641 1.06036 1.13762 1.38734 1.50709 1.52925 2.21782 2.46719
2.83327 3.01016 3.57300 3.84672 3.95579 4.00097 4.21789 4.25215
4.46825 4.66341 4.79371 4.86437 4.95606 4.98422 5.15110 5.21061
5.29055 5.47640 5.58616 5.74666 5.82353 6.10525 6.26401 6.71217
6.94930 8.18647 8.44606
Molecular weight = 277.04amu
Principal moments of inertia in cm(-1)
A = 0.025796 B = 0.005314 C = 0.004684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1085.194840 B = 5268.025419 C = 5976.831823
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.755 5.755
2 C 0.026 3.974
3 Si 0.983 3.017
4 H -0.262 1.262
5 H -0.266 1.266
6 H -0.258 1.258
7 C -0.471 4.471
8 H 0.083 0.917
9 C 0.227 3.773
10 C -0.249 4.249
11 C -0.004 4.004
12 C -0.013 4.013
13 C -0.107 4.107
14 C -0.067 4.067
15 C -0.136 4.136
16 C 0.091 3.909
17 F -0.136 7.136
18 C -0.090 4.090
19 Cl -0.063 7.063
20 C -0.285 4.285
21 C 0.104 3.896
22 N -0.518 5.518
23 H 0.279 0.721
24 H 0.099 0.901
25 H 0.152 0.848
26 H 0.187 0.813
27 H 0.179 0.821
28 H 0.131 0.869
29 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.914 -14.254 1.862 14.898
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.377 5.377
2 C -0.195 4.195
3 Si 0.803 3.197
4 H -0.186 1.186
5 H -0.190 1.190
6 H -0.182 1.182
7 C -0.503 4.503
8 H 0.101 0.899
9 C 0.102 3.898
10 C -0.272 4.272
11 C -0.011 4.011
12 C -0.014 4.014
13 C -0.126 4.126
14 C -0.085 4.085
15 C -0.154 4.154
16 C 0.071 3.929
17 F -0.115 7.115
18 C -0.118 4.118
19 Cl -0.034 7.034
20 C -0.308 4.308
21 C -0.060 4.060
22 N -0.231 5.231
23 H 0.090 0.910
24 H 0.117 0.883
25 H 0.170 0.830
26 H 0.204 0.796
27 H 0.196 0.804
28 H 0.148 0.852
29 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 3.390 -13.192 1.718 13.728
hybrid contribution 0.920 0.385 -0.610 1.169
sum 4.310 -12.807 1.108 13.558
Atomic orbital electron populations
1.70208 1.08721 1.29129 1.29680 1.26926 0.95734 1.04321 0.92548
0.85261 0.78723 0.75726 0.80006 1.18641 1.18989 1.18201 1.19910
0.94542 0.90625 1.45202 0.89883 1.18885 0.88792 0.92857 0.89301
1.21847 0.98595 0.92652 1.14082 1.18684 0.93506 0.90782 0.98106
1.18796 0.93599 0.94352 0.94687 1.21587 1.00834 0.92391 0.97756
1.21510 0.92878 0.96671 0.97445 1.21567 0.99856 0.99427 0.94589
1.17594 0.89528 0.93558 0.92227 1.91500 1.59314 1.94489 1.66183
1.21323 1.01391 0.91419 0.97639 1.98386 1.92031 1.54669 1.58354
1.21594 0.93111 0.98595 1.17471 1.22919 0.99945 0.88793 0.94333
1.68647 1.07694 1.28789 1.18020 0.91011 0.88263 0.83005 0.79622
0.80366 0.85155 0.84057
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -41.42 11.46 21.84 0.25 -41.17 15
2 C 0.03 1.37 5.50 85.29 0.47 1.84 15
3 Si 0.98 39.12 29.56 68.60 2.03 41.14 15
4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15
5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 15
6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15
7 C -0.47 -26.34 9.14 23.49 0.21 -26.12 15
8 H 0.08 4.40 7.85 -2.91 -0.02 4.38 15
9 C 0.23 12.77 6.55 40.19 0.26 13.04 15
10 C -0.25 -12.43 8.02 23.07 0.19 -12.25 15
11 C 0.00 -0.19 5.12 -19.88 -0.10 -0.29 15
12 C -0.01 -0.47 5.51 -20.03 -0.11 -0.58 15
13 C -0.11 -2.70 9.55 22.48 0.21 -2.49 15
14 C -0.07 -1.17 10.03 22.23 0.22 -0.95 15
15 C -0.14 -2.61 10.02 22.35 0.22 -2.38 15
16 C 0.09 2.54 7.27 22.36 0.16 2.70 15
17 F -0.14 -3.93 16.83 44.97 0.76 -3.17 15
18 C -0.09 -3.09 6.30 22.59 0.14 -2.95 15
19 Cl -0.06 -2.44 25.71 -2.72 -0.07 -2.51 15
20 C -0.29 -11.99 9.66 22.77 0.22 -11.78 15
21 C 0.10 4.94 11.17 84.81 0.95 5.89 15
22 N -0.52 -29.13 7.85 -189.37 -1.49 -30.62 15
23 H 0.28 13.84 8.29 -92.71 -0.77 13.07 15
24 H 0.10 4.88 7.22 -2.91 -0.02 4.86 15
25 H 0.15 3.39 8.06 -2.91 -0.02 3.37 15
26 H 0.19 1.49 8.06 -2.91 -0.02 1.47 15
27 H 0.18 2.08 8.06 -2.91 -0.02 2.05 15
28 H 0.13 4.52 8.06 -2.91 -0.02 4.49 15
29 H 0.14 5.87 8.06 -2.91 -0.02 5.85 15
Total: -1.00 -66.74 280.21 5.72 -61.01
By element:
Atomic # 1 Polarization: 10.43 SS G_CDS: 1.19 Total: 11.62 kcal
Atomic # 6 Polarization: -39.36 SS G_CDS: 3.05 Total: -36.31 kcal
Atomic # 7 Polarization: -70.55 SS G_CDS: -1.24 Total: -71.78 kcal
Atomic # 9 Polarization: -3.93 SS G_CDS: 0.76 Total: -3.17 kcal
Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.14 kcal
Atomic # 17 Polarization: -2.44 SS G_CDS: -0.07 Total: -2.51 kcal
Total: -66.74 5.72 -61.01 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001242574045.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.724 kcal
(2) G-P(sol) polarization free energy of solvation -66.736 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.013 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.290 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds