Wall clock time and date at job start Mon Mar 30 2020 01:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48494 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47132 * 299.99997 * 3 2 1 6 6 H 1.48504 * 109.47038 * 59.99808 * 3 2 1 7 7 C 1.40038 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99862 * 197.33798 * 7 2 1 9 9 C 1.40815 * 120.00216 * 17.34927 * 7 2 1 10 10 C 1.40796 * 120.30193 * 25.21849 * 9 7 2 11 11 C 1.36346 * 120.01521 * 180.28181 * 10 9 7 12 12 C 1.39216 * 120.65777 * 359.76817 * 11 10 9 13 13 F 1.35098 * 119.69739 * 179.97438 * 12 11 10 14 14 C 1.38391 * 120.60987 * 359.95429 * 12 11 10 15 15 C 1.39053 * 119.95479 * 0.02562 * 14 12 11 16 16 C 1.47874 * 120.32109 * 180.02562 * 15 14 12 17 17 C 1.39608 * 120.57614 * 64.99474 * 16 15 14 18 18 N 1.31671 * 120.57127 * 180.23477 * 17 16 15 19 19 C 1.31982 * 121.91306 * 359.47838 * 18 17 16 20 20 C 1.38265 * 121.11210 * 0.52934 * 19 18 17 21 21 C 1.38536 * 119.29496 * 359.74221 * 20 19 18 22 22 Cl 1.73599 * 120.87110 * 180.02562 * 21 20 19 23 23 H 0.97003 * 119.99804 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99113 * 0.02562 * 10 9 7 25 25 H 1.08006 * 119.67348 * 179.74821 * 11 10 9 26 26 H 1.07998 * 120.02094 * 180.02562 * 14 12 11 27 27 H 1.08006 * 119.71278 * 359.96584 * 17 16 15 28 28 H 1.07995 * 119.44735 * 180.26510 * 19 18 17 29 29 H 1.07998 * 120.35422 * 179.76226 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7020 1.3464 0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8832 2.3965 1.2125 7 6 2.0082 -1.2128 0.0005 8 1 3.0514 -1.2339 0.2793 9 6 1.3522 -2.4047 -0.3626 10 6 0.2242 -2.3667 -1.2044 11 6 -0.4100 -3.5239 -1.5476 12 6 0.0489 -4.7513 -1.0774 13 9 -0.5946 -5.8858 -1.4293 14 6 1.1585 -4.8200 -0.2532 15 6 1.8249 -3.6556 0.1125 16 6 3.0117 -3.7197 0.9924 17 6 4.1811 -4.3496 0.5627 18 7 5.2362 -4.4106 1.3480 19 6 5.2391 -3.8776 2.5554 20 6 4.1211 -3.2362 3.0558 21 6 2.9822 -3.1487 2.2721 22 17 1.5559 -2.3521 2.8593 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1412 -1.4204 -1.5750 25 1 -1.2772 -3.4880 -2.1904 26 1 1.5065 -5.7773 0.1057 27 1 4.2192 -4.7946 -0.4207 28 1 6.1282 -3.9473 3.1644 29 1 4.1357 -2.8077 4.0471 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243044177.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:44 Heat of formation + Delta-G solvation = -7.525624 kcal Electronic energy + Delta-G solvation = -18560.819144 eV Core-core repulsion = 15388.457137 eV Total energy + Delta-G solvation = -3172.362007 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.52923 -39.67305 -37.45004 -35.85486 -33.82020 -32.28545 -31.33265 -29.57652 -28.56936 -25.28489 -23.31133 -22.92459 -21.19487 -20.29196 -17.57439 -16.96184 -16.26349 -16.00885 -15.53852 -14.73803 -14.48312 -14.26868 -14.06011 -13.54970 -13.24407 -13.12012 -12.72064 -12.22706 -12.07648 -11.81787 -11.44927 -11.30087 -11.19326 -10.99581 -10.53874 -10.16491 -10.11808 -9.78004 -9.32599 -9.14553 -8.84805 -8.53728 -7.69337 -7.42738 -7.01124 -4.54930 1.45334 1.56891 2.50154 2.67126 2.76771 2.95971 2.99509 3.02379 3.76212 4.17006 4.35169 4.80956 5.17398 5.25470 5.36869 5.52623 5.76486 5.92661 5.97059 6.07245 6.15156 6.31089 6.60572 6.78259 6.88461 6.98825 7.01972 7.25083 7.47767 7.69988 7.77315 7.98950 8.31135 8.34868 8.59237 8.67100 9.90620 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.011067 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.727844 B = 2529.361505 C = 4102.250687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.082 3.918 3 Si 0.901 3.099 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.428 4.428 8 H 0.079 0.921 9 C 0.133 3.867 10 C -0.136 4.136 11 C -0.120 4.120 12 C -0.050 4.050 13 F -0.173 7.173 14 C -0.086 4.086 15 C -0.179 4.179 16 C -0.019 4.019 17 C 0.102 3.898 18 N -0.488 5.488 19 C 0.082 3.918 20 C -0.173 4.173 21 C 0.017 3.983 22 Cl -0.033 7.033 23 H 0.285 0.715 24 H 0.128 0.872 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.158 0.842 28 H 0.153 0.847 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -0.878 3.588 5.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.456 4.456 8 H 0.097 0.903 9 C 0.130 3.870 10 C -0.155 4.155 11 C -0.140 4.140 12 C -0.069 4.069 13 F -0.153 7.153 14 C -0.105 4.105 15 C -0.182 4.182 16 C -0.022 4.022 17 C -0.056 4.056 18 N -0.197 5.197 19 C -0.075 4.075 20 C -0.194 4.194 21 C -0.017 4.017 22 Cl -0.003 7.003 23 H 0.096 0.904 24 H 0.146 0.854 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.175 0.825 28 H 0.170 0.830 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.608 -1.091 3.357 5.804 hybrid contribution -0.755 1.166 0.417 1.450 sum 3.852 0.075 3.774 5.393 Atomic orbital electron populations 1.69789 1.07631 1.29747 1.32535 1.25912 0.94677 1.01399 0.91922 0.86335 0.81330 0.80895 0.78933 1.18123 1.19369 1.19638 1.19480 0.97852 0.90809 1.37438 0.90322 1.17443 0.90486 0.90821 0.88256 1.20934 0.98291 0.96645 0.99614 1.20497 1.00149 0.91929 1.01382 1.17096 0.98760 0.81417 1.09663 1.91289 1.81796 1.50327 1.91874 1.20416 0.95118 0.96982 0.98009 1.17948 0.99814 0.93433 1.06962 1.19643 0.95427 0.95197 0.91893 1.23024 0.87100 0.96537 0.98889 1.67508 1.29183 1.17931 1.05063 1.22521 0.97138 0.95268 0.92559 1.21954 0.93178 1.02949 1.01296 1.21593 0.89752 0.96407 0.93977 1.98398 1.37187 1.77375 1.87387 0.90415 0.85402 0.88140 0.88054 0.82477 0.82973 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.85 10.97 55.55 0.61 -17.24 15 2 C 0.08 1.84 5.14 -17.31 -0.09 1.75 15 3 Si 0.90 17.34 29.59 -169.99 -5.03 12.31 15 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 7 C -0.43 -10.03 6.72 -37.93 -0.25 -10.28 15 8 H 0.08 1.87 7.07 -52.49 -0.37 1.50 15 9 C 0.13 3.15 5.13 -106.55 -0.55 2.61 15 10 C -0.14 -3.21 8.63 -39.30 -0.34 -3.54 15 11 C -0.12 -2.71 9.94 -39.90 -0.40 -3.10 15 12 C -0.05 -1.12 7.31 -39.16 -0.29 -1.41 15 13 F -0.17 -3.82 17.26 2.25 0.04 -3.78 15 14 C -0.09 -1.88 9.71 -39.22 -0.38 -2.26 15 15 C -0.18 -3.96 4.79 -104.25 -0.50 -4.46 15 16 C -0.02 -0.38 4.39 -104.72 -0.46 -0.84 15 17 C 0.10 1.86 10.92 -17.11 -0.19 1.68 15 18 N -0.49 -8.47 10.34 -12.90 -0.13 -8.60 15 19 C 0.08 1.24 11.17 -17.48 -0.20 1.05 15 20 C -0.17 -2.74 9.92 -39.46 -0.39 -3.13 15 21 C 0.02 0.33 5.73 -38.75 -0.22 0.11 15 22 Cl -0.03 -0.65 26.40 -51.86 -1.37 -2.02 15 23 H 0.28 6.00 8.30 -40.82 -0.34 5.66 15 24 H 0.13 3.07 6.19 -52.49 -0.32 2.74 15 25 H 0.10 2.05 8.06 -52.48 -0.42 1.63 15 26 H 0.10 2.02 8.06 -52.49 -0.42 1.60 15 27 H 0.16 2.64 8.06 -52.48 -0.42 2.21 15 28 H 0.15 1.74 8.06 -52.49 -0.42 1.32 15 29 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 LS Contribution 277.22 15.07 4.18 4.18 Total: -1.00 -25.18 277.22 -7.90 -33.08 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -1.94 Total: 3.91 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -4.25 Total: -21.84 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.48 Total: -25.84 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.37 Total: -2.02 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -25.18 -7.90 -33.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243044177.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.558 kcal (2) G-P(sol) polarization free energy of solvation -25.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds