Wall clock time and date at job start Mon Mar 30 2020 01:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86805 * 120.00056 * 2 1 4 4 H 1.48499 * 109.47216 * 270.00082 * 3 2 1 5 5 H 1.48500 * 109.46992 * 30.00094 * 3 2 1 6 6 H 1.48498 * 109.47089 * 150.00106 * 3 2 1 7 7 C 1.39923 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00206 * 162.74755 * 7 2 1 9 9 C 1.41423 * 120.00064 * 342.74976 * 7 2 1 10 10 C 1.40753 * 120.17533 * 334.78925 * 9 7 2 11 11 C 1.37890 * 119.97058 * 180.02562 * 10 9 7 12 12 F 1.35098 * 119.83858 * 179.97438 * 11 10 9 13 13 C 1.38669 * 120.33095 * 359.73967 * 11 10 9 14 14 C 1.39658 * 120.34285 * 0.51773 * 13 11 10 15 15 C 1.48409 * 119.98274 * 179.76507 * 14 13 11 16 16 C 1.39281 * 120.54833 * 129.74581 * 15 14 13 17 17 N 1.31738 * 120.60977 * 179.97438 * 16 15 14 18 18 C 1.31938 * 121.88593 * 359.97438 * 17 16 15 19 19 C 1.38201 * 121.04207 * 359.97438 * 18 17 16 20 20 C 1.38612 * 119.27113 * 0.02562 * 19 18 17 21 21 Cl 1.73598 * 120.86007 * 179.97438 * 20 19 18 22 22 C 1.38777 * 120.03087 * 359.48436 * 14 13 11 23 23 H 0.97000 * 120.00033 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.01317 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.83079 * 180.26017 * 13 11 10 26 26 H 1.07997 * 119.69322 * 359.97438 * 16 15 14 27 27 H 1.07998 * 119.47562 * 179.97438 * 18 17 16 28 28 H 1.08002 * 120.36546 * 179.97438 * 19 18 17 29 29 H 1.07995 * 120.16061 * 180.23640 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2117 -0.0005 8 1 3.0515 -1.2327 -0.2780 9 6 1.3485 -2.4091 0.3621 10 6 0.2198 -2.3688 1.2020 11 6 -0.4196 -3.5389 1.5534 12 9 -1.5024 -3.4972 2.3602 13 6 0.0405 -4.7580 1.0789 14 6 1.1624 -4.8141 0.2491 15 6 1.6509 -6.1236 -0.2500 16 6 1.9058 -6.3141 -1.6060 17 7 2.3399 -7.4758 -2.0502 18 6 2.5504 -8.4968 -1.2414 19 6 2.3225 -8.3883 0.1173 20 6 1.8651 -7.1861 0.6340 21 17 1.5645 -7.0044 2.3341 22 6 1.8170 -3.6455 -0.1138 23 1 -0.4850 0.8400 0.0004 24 1 -0.1449 -1.4218 1.5718 25 1 -0.4690 -5.6691 1.3558 26 1 1.7459 -5.5019 -2.2996 27 1 2.9064 -9.4319 -1.6477 28 1 2.4981 -9.2312 0.7694 29 1 2.6825 -3.6862 -0.7585 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243052340.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:16 Heat of formation + Delta-G solvation = -9.556445 kcal Electronic energy + Delta-G solvation = -17995.058936 eV Core-core repulsion = 14822.608866 eV Total energy + Delta-G solvation = -3172.450070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.71455 -40.03817 -37.44981 -36.43177 -34.11381 -32.18678 -31.61766 -29.78276 -28.23722 -25.61674 -23.63149 -23.33116 -20.85747 -20.66360 -17.83410 -17.06520 -16.38015 -15.97576 -15.11336 -14.98233 -14.76851 -14.46640 -14.36419 -13.89347 -13.66343 -13.35129 -12.99749 -12.16456 -12.08768 -11.96508 -11.71869 -11.33315 -11.14972 -10.84026 -10.76884 -10.43796 -10.19819 -9.84325 -9.48768 -9.37074 -9.26096 -8.93127 -7.60367 -7.38820 -6.93392 -4.59193 1.05836 1.16935 2.20538 2.56029 2.62480 2.99618 3.00984 3.07361 3.80424 3.85986 4.36831 4.50858 4.85496 4.92778 5.08343 5.37019 5.46521 5.71426 5.79798 5.88521 6.09119 6.22159 6.45177 6.63407 6.79829 6.84477 7.03472 7.29834 7.52080 7.58139 7.75412 7.99094 8.04768 8.37843 8.64665 8.66624 10.00278 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.005511 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.220052 B = 5079.607792 C = 5859.478065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.190 4.190 11 C 0.106 3.894 12 F -0.165 7.165 13 C -0.244 4.244 14 C -0.019 4.019 15 C -0.055 4.055 16 C 0.119 3.881 17 N -0.482 5.482 18 C 0.092 3.908 19 C -0.167 4.167 20 C 0.007 3.993 21 Cl -0.045 7.045 22 C -0.202 4.202 23 H 0.285 0.715 24 H 0.130 0.870 25 H 0.103 0.897 26 H 0.168 0.832 27 H 0.159 0.841 28 H 0.141 0.859 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -9.452 0.293 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.124 3.876 10 C -0.210 4.210 11 C 0.087 3.913 12 F -0.144 7.144 13 C -0.264 4.264 14 C -0.020 4.020 15 C -0.057 4.057 16 C -0.038 4.038 17 N -0.190 5.190 18 C -0.064 4.064 19 C -0.188 4.188 20 C -0.028 4.028 21 Cl -0.015 7.015 22 C -0.222 4.222 23 H 0.096 0.904 24 H 0.148 0.852 25 H 0.121 0.879 26 H 0.185 0.815 27 H 0.177 0.823 28 H 0.159 0.841 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.231 -9.378 -0.432 9.928 hybrid contribution -0.133 0.840 1.228 1.494 sum 3.098 -8.538 0.797 9.118 Atomic orbital electron populations 1.69795 1.07702 1.29810 1.33631 1.25964 0.94776 1.01642 0.92018 0.86260 0.80650 0.80212 0.79414 1.19275 1.19945 1.18272 1.19583 0.98092 0.90793 1.39904 0.89780 1.17245 0.90201 0.92052 0.88059 1.21377 1.00677 0.96012 1.02911 1.17507 0.85498 0.94917 0.93412 1.91345 1.53680 1.97548 1.71848 1.20201 1.02122 0.95415 1.08704 1.17756 0.95949 0.89638 0.98687 1.20032 0.98046 0.94017 0.93653 1.23062 0.93648 0.94618 0.92482 1.67623 1.11662 1.00181 1.39543 1.22677 0.96902 0.97708 0.89148 1.21985 1.02377 0.97049 0.97391 1.21463 0.99991 0.94822 0.86534 1.98391 1.93937 1.97687 1.11521 1.21067 1.03559 0.91373 1.06159 0.90418 0.85202 0.87911 0.81494 0.82343 0.84143 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.39 10.97 55.55 0.61 -18.78 15 2 C 0.08 1.79 5.14 -17.35 -0.09 1.70 15 3 Si 0.91 17.68 29.59 -169.99 -5.03 12.65 15 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 6 H -0.26 -5.00 7.11 56.52 0.40 -4.59 15 7 C -0.46 -11.25 9.05 -37.74 -0.34 -11.60 15 8 H 0.08 1.97 7.90 -52.48 -0.41 1.56 15 9 C 0.13 3.17 5.56 -106.87 -0.59 2.58 15 10 C -0.19 -4.80 8.66 -38.76 -0.34 -5.13 15 11 C 0.11 2.53 7.28 -39.55 -0.29 2.24 15 12 F -0.17 -3.85 17.26 2.25 0.04 -3.81 15 13 C -0.24 -5.36 8.25 -38.89 -0.32 -5.68 15 14 C -0.02 -0.40 5.15 -104.98 -0.54 -0.94 15 15 C -0.05 -0.98 5.48 -104.71 -0.57 -1.55 15 16 C 0.12 1.96 10.68 -17.20 -0.18 1.77 15 17 N -0.48 -7.33 10.35 -13.00 -0.13 -7.47 15 18 C 0.09 1.16 11.17 -17.52 -0.20 0.97 15 19 C -0.17 -2.14 9.92 -39.46 -0.39 -2.53 15 20 C 0.01 0.10 6.33 -38.84 -0.25 -0.14 15 21 Cl -0.04 -0.71 26.27 -51.86 -1.36 -2.07 15 22 C -0.20 -4.54 9.26 -38.52 -0.36 -4.90 15 23 H 0.28 6.40 8.30 -40.82 -0.34 6.06 15 24 H 0.13 3.43 6.18 -52.48 -0.32 3.10 15 25 H 0.10 2.12 7.23 -52.49 -0.38 1.75 15 26 H 0.17 2.59 8.04 -52.49 -0.42 2.17 15 27 H 0.16 1.40 8.06 -52.49 -0.42 0.98 15 28 H 0.14 1.38 8.06 -52.49 -0.42 0.95 15 29 H 0.10 2.15 8.04 -52.49 -0.42 1.73 15 LS Contribution 279.50 15.07 4.21 4.21 Total: -1.00 -26.29 279.50 -8.07 -34.36 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -1.94 Total: 4.14 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -4.46 Total: -23.22 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.47 Total: -26.25 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.36 Total: -2.07 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.29 -8.07 -34.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243052340.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.799 kcal (2) G-P(sol) polarization free energy of solvation -26.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds