Wall clock time and date at job start Mon Mar 30 2020 01:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86806 * 120.00131 * 2 1 4 4 H 1.48506 * 109.46920 * 275.41507 * 3 2 1 5 5 H 1.48497 * 109.46738 * 35.41094 * 3 2 1 6 6 H 1.48493 * 109.47157 * 155.41418 * 3 2 1 7 7 C 1.40050 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99588 * 341.79722 * 7 2 1 9 9 C 1.40951 * 120.00325 * 161.80495 * 7 2 1 10 10 C 1.40938 * 120.13385 * 330.01367 * 9 7 2 11 11 C 1.36207 * 119.89388 * 180.02562 * 10 9 7 12 12 C 1.40000 * 120.19055 * 0.02562 * 11 10 9 13 13 C 1.48013 * 119.85914 * 179.97438 * 12 11 10 14 14 C 1.39996 * 120.93431 * 130.00073 * 13 12 11 15 15 C 1.37912 * 119.01082 * 179.97438 * 14 13 12 16 16 N 1.31959 * 120.93726 * 0.02562 * 15 14 13 17 17 C 1.31905 * 122.07599 * 359.97438 * 16 15 14 18 18 C 1.38111 * 120.87418 * 359.74505 * 17 16 15 19 19 Cl 1.73601 * 120.51561 * 180.28668 * 18 17 16 20 20 C 1.39761 * 120.27918 * 359.70512 * 12 11 10 21 21 C 1.36589 * 120.09695 * 0.54892 * 20 12 11 22 22 F 1.35100 * 120.09706 * 179.75128 * 21 20 12 23 23 H 0.96998 * 120.00098 * 359.97438 * 1 2 3 24 24 H 1.07991 * 120.05188 * 0.03852 * 10 9 7 25 25 H 1.07999 * 119.90060 * 179.97438 * 11 10 9 26 26 H 1.07992 * 120.49588 * 359.94922 * 14 13 12 27 27 H 1.08001 * 119.52850 * 179.97438 * 15 14 13 28 28 H 1.07992 * 119.55905 * 180.02562 * 17 16 15 29 29 H 1.08010 * 119.95520 * 180.30460 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3750 2.1125 -1.3939 5 1 1.5012 2.6169 0.8113 6 1 3.5919 1.4099 0.5825 7 6 2.0081 -1.2128 -0.0005 8 1 1.5086 -2.1249 0.2913 9 6 3.3648 -1.2432 -0.3817 10 6 3.8582 -0.3107 -1.3162 11 6 5.1699 -0.3448 -1.6814 12 6 6.0291 -1.3038 -1.1317 13 6 7.4531 -1.3346 -1.5342 14 6 8.4716 -1.3722 -0.5745 15 6 9.7851 -1.4005 -0.9939 16 7 10.0875 -1.3921 -2.2784 17 6 9.1604 -1.3570 -3.2160 18 6 7.8194 -1.3327 -2.8862 19 17 6.6068 -1.2941 -4.1279 20 6 5.5492 -2.2286 -0.2001 21 6 4.2347 -2.2082 0.1705 22 9 3.7696 -3.1053 1.0672 23 1 -0.4850 0.8400 0.0004 24 1 3.1974 0.4298 -1.7418 25 1 5.5481 0.3694 -2.3978 26 1 8.2324 -1.3786 0.4786 27 1 10.5775 -1.4292 -0.2606 28 1 9.4537 -1.3518 -4.2553 29 1 6.2177 -2.9630 0.2244 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243382995.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:13 Heat of formation + Delta-G solvation = -7.379453 kcal Electronic energy + Delta-G solvation = -18117.328744 eV Core-core repulsion = 14944.973076 eV Total energy + Delta-G solvation = -3172.355668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.036 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.52554 -39.98680 -37.79635 -36.30073 -34.31853 -32.70692 -30.90976 -30.06671 -29.56491 -25.80849 -23.39863 -22.92873 -21.64858 -20.59835 -17.80023 -17.38127 -16.37081 -16.01140 -15.63093 -15.22668 -14.92415 -14.30970 -14.17549 -13.97369 -13.82721 -13.41779 -12.94290 -12.38126 -12.19315 -12.08132 -11.76404 -11.62954 -11.34100 -11.03904 -10.78266 -10.47739 -10.24981 -9.97922 -9.60825 -9.38639 -9.26204 -8.78757 -7.96239 -7.66391 -7.30691 -4.77506 1.08130 1.18727 2.27154 2.35383 2.39207 2.91711 3.03307 3.11788 3.72895 3.82188 4.16471 4.51236 4.84320 4.92881 5.08806 5.14299 5.47585 5.57900 5.71241 5.77662 5.89262 6.16571 6.21897 6.35858 6.55801 6.65235 6.78072 7.06645 7.20554 7.38713 7.48987 7.71541 7.97266 7.99972 8.28198 8.40037 9.68689 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.005818 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.509202 B = 4811.096294 C = 5208.689299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.413 4.413 8 H 0.100 0.900 9 C 0.075 3.925 10 C -0.228 4.228 11 C -0.036 4.036 12 C -0.204 4.204 13 C 0.064 3.936 14 C -0.170 4.170 15 C 0.098 3.902 16 N -0.494 5.494 17 C 0.111 3.889 18 C -0.100 4.100 19 Cl -0.053 7.053 20 C -0.076 4.076 21 C -0.015 4.015 22 F -0.156 7.156 23 H 0.293 0.707 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.140 0.860 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.195 1.120 -3.039 11.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.141 4.141 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.163 1.163 7 C -0.439 4.439 8 H 0.118 0.882 9 C 0.071 3.929 10 C -0.247 4.247 11 C -0.054 4.054 12 C -0.205 4.205 13 C 0.055 3.945 14 C -0.190 4.190 15 C -0.057 4.057 16 N -0.203 5.203 17 C -0.046 4.046 18 C -0.130 4.130 19 Cl -0.024 7.024 20 C -0.095 4.095 21 C -0.035 4.035 22 F -0.135 7.135 23 H 0.104 0.896 24 H 0.128 0.872 25 H 0.120 0.880 26 H 0.158 0.842 27 H 0.174 0.826 28 H 0.175 0.825 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.635 1.151 -3.332 12.157 hybrid contribution -0.978 0.542 0.275 1.152 sum 10.657 1.693 -3.058 11.215 Atomic orbital electron populations 1.69650 1.08347 1.31250 1.30863 1.26344 0.94878 1.02247 0.90672 0.86225 0.81486 0.78890 0.79403 1.18975 1.21196 1.16273 1.19623 0.92838 0.96651 1.34813 0.88216 1.17778 0.93062 0.91104 0.90993 1.20495 0.95637 1.04811 1.03787 1.20396 0.92897 0.95897 0.96242 1.17449 0.90330 1.04487 1.08271 1.19166 0.94420 0.90639 0.90236 1.22349 0.92626 1.03220 1.00824 1.22666 0.95365 0.95164 0.92529 1.67719 1.36658 1.14323 1.01641 1.22567 0.86721 0.95834 0.99501 1.22305 0.91203 1.08892 0.90559 1.98366 1.55439 1.96750 1.51827 1.20249 0.93886 0.98393 0.97014 1.17240 0.92124 0.96588 0.97530 1.91328 1.89572 1.66410 1.66192 0.89612 0.87163 0.87967 0.84199 0.82648 0.82530 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.28 13.93 55.55 0.77 -18.51 15 2 C 0.08 1.99 5.40 -17.32 -0.09 1.90 15 3 Si 0.92 19.19 24.51 -169.99 -4.17 15.02 15 4 H -0.26 -5.31 6.71 56.52 0.38 -4.93 15 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 6 H -0.24 -5.16 6.87 56.52 0.39 -4.77 15 7 C -0.41 -10.63 9.24 -37.88 -0.35 -10.98 15 8 H 0.10 2.74 7.97 -52.48 -0.42 2.32 15 9 C 0.07 1.81 5.11 -106.74 -0.55 1.27 15 10 C -0.23 -5.10 7.10 -39.29 -0.28 -5.38 15 11 C -0.04 -0.72 8.20 -39.65 -0.33 -1.05 15 12 C -0.20 -3.95 5.20 -104.66 -0.54 -4.50 15 13 C 0.06 1.07 5.49 -104.54 -0.57 0.50 15 14 C -0.17 -2.44 9.64 -39.04 -0.38 -2.81 15 15 C 0.10 1.27 11.17 -17.62 -0.20 1.08 15 16 N -0.49 -7.05 10.34 -13.32 -0.14 -7.19 15 17 C 0.11 1.55 10.98 -17.57 -0.19 1.36 15 18 C -0.10 -1.57 6.32 -38.94 -0.25 -1.82 15 19 Cl -0.05 -0.81 26.25 -51.86 -1.36 -2.17 15 20 C -0.08 -1.54 9.44 -39.61 -0.37 -1.92 15 21 C -0.01 -0.34 7.26 -39.07 -0.28 -0.63 15 22 F -0.16 -3.66 16.75 2.25 0.04 -3.62 15 23 H 0.29 6.46 8.30 -40.82 -0.34 6.12 15 24 H 0.11 2.42 4.73 -52.49 -0.25 2.18 15 25 H 0.10 1.89 7.24 -52.49 -0.38 1.51 15 26 H 0.14 1.80 8.06 -52.49 -0.42 1.38 15 27 H 0.16 1.49 8.06 -52.49 -0.42 1.07 15 28 H 0.16 1.78 8.06 -52.49 -0.42 1.36 15 29 H 0.11 1.95 8.05 -52.48 -0.42 1.53 15 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -25.90 273.46 -7.02 -32.92 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -1.91 Total: 2.42 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -4.38 Total: -22.98 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.64 Total: -25.70 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.04 Total: -3.62 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.17 Total: 15.02 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.36 Total: -2.17 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -25.90 -7.02 -32.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243382995.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.538 kcal (2) G-P(sol) polarization free energy of solvation -25.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds